Wall clock time and date at job start Tue Mar 31 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48504 * 109.46901 * 274.15081 * 3 2 1 5 5 H 1.48504 * 109.47303 * 34.14759 * 3 2 1 6 6 H 1.48501 * 109.46970 * 154.15002 * 3 2 1 7 7 C 1.38803 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00591 * 197.16190 * 7 2 1 9 9 N 1.36940 * 120.00273 * 17.15960 * 7 2 1 10 10 C 1.47158 * 120.97691 * 26.43201 * 9 7 2 11 11 C 1.53709 * 108.16441 * 129.43215 * 10 9 7 12 12 O 1.42955 * 109.15034 * 52.53334 * 11 10 9 13 13 C 1.42961 * 114.16892 * 297.29240 * 12 11 10 14 14 H 1.09002 * 109.51304 * 302.65552 * 13 12 11 15 15 C 1.53001 * 109.55750 * 182.52967 * 13 12 11 16 16 N 1.46499 * 109.47110 * 65.22512 * 15 13 12 17 17 C 1.34772 * 119.99858 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00097 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99976 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.52165 * 60.00180 * 19 17 16 21 21 C 1.53181 * 109.52426 * 180.12950 * 19 17 16 22 22 C 1.53180 * 109.03681 * 176.89145 * 21 19 17 23 23 C 1.53095 * 109.15805 * 303.01543 * 22 21 19 24 24 O 1.42899 * 109.41455 * 57.61465 * 23 22 21 25 25 C 1.42915 * 114.15323 * 298.86666 * 24 23 22 26 26 C 1.47145 * 120.98818 * 206.70963 * 9 7 2 27 27 H 0.96998 * 120.00361 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.67714 * 249.20754 * 10 9 7 29 29 H 1.09001 * 109.68050 * 9.75702 * 10 9 7 30 30 H 1.09007 * 109.65426 * 292.56823 * 11 10 9 31 31 H 1.08995 * 109.44257 * 172.37307 * 11 10 9 32 32 H 1.09001 * 109.47186 * 185.22743 * 15 13 12 33 33 H 1.09003 * 109.46727 * 305.22380 * 15 13 12 34 34 H 0.97003 * 119.99837 * 0.02562 * 16 15 13 35 35 H 1.09000 * 109.54227 * 296.75560 * 21 19 17 36 36 H 1.08993 * 109.54483 * 57.02009 * 21 19 17 37 37 H 1.08998 * 109.52700 * 62.92048 * 22 21 19 38 38 H 1.08997 * 109.51580 * 183.11602 * 22 21 19 39 39 H 1.08999 * 109.47743 * 177.59184 * 23 22 21 40 40 H 1.08997 * 109.48147 * 297.61287 * 23 22 21 41 41 H 1.08999 * 109.42736 * 301.11596 * 25 24 23 42 42 H 1.09000 * 109.53351 * 181.07547 * 25 24 23 43 43 H 1.09000 * 109.68266 * 350.23291 * 26 9 7 44 44 H 1.09000 * 109.68581 * 110.79267 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4098 2.0971 -1.3965 5 1 1.4942 2.6259 0.7859 6 1 3.5888 1.4165 0.6105 7 6 2.0102 -1.2020 -0.0005 8 1 3.0542 -1.2230 0.2754 9 7 1.3714 -2.3615 -0.3509 10 6 0.2048 -2.3422 -1.2478 11 6 0.4449 -3.3665 -2.3684 12 8 0.7767 -4.6293 -1.7863 13 6 1.9851 -4.6222 -1.0223 14 1 2.8115 -4.2911 -1.6512 15 6 2.2712 -6.0328 -0.5033 16 7 2.5397 -6.9242 -1.6345 17 6 2.8196 -8.2243 -1.4162 18 8 2.8487 -8.6565 -0.2833 19 6 3.0953 -9.1414 -2.5798 20 1 3.9595 -8.7762 -3.1346 21 6 3.3795 -10.5546 -2.0617 22 6 3.5812 -11.4932 -3.2553 23 6 2.3404 -11.4413 -4.1506 24 8 2.1152 -10.0947 -4.5726 25 6 1.8739 -9.1791 -3.5021 26 6 1.8273 -3.6627 0.1629 27 1 -0.4850 0.8400 0.0004 28 1 -0.6923 -2.6089 -0.6888 29 1 0.0882 -1.3471 -1.6770 30 1 1.2658 -3.0308 -3.0022 31 1 -0.4602 -3.4682 -2.9670 32 1 3.1400 -6.0087 0.1545 33 1 1.4064 -6.3986 0.0502 34 1 2.5168 -6.5784 -2.5405 35 1 4.2814 -10.5441 -1.4497 36 1 2.5360 -10.9005 -1.4643 37 1 4.4548 -11.1760 -3.8247 38 1 3.7291 -12.5118 -2.8966 39 1 2.4957 -12.0746 -5.0240 40 1 1.4744 -11.7973 -3.5927 41 1 1.0010 -9.5047 -2.9363 42 1 1.6938 -8.1835 -3.9077 43 1 2.7857 -3.5426 0.6680 44 1 1.0908 -4.0602 0.8613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035304972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:41 Heat of formation + Delta-G solvation = -137.335195 kcal Electronic energy + Delta-G solvation = -24767.568205 eV Core-core repulsion = 21105.263502 eV Total energy + Delta-G solvation = -3662.304703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40355 -40.20526 -39.41823 -36.53954 -35.82258 -34.60657 -33.43484 -32.80386 -31.81194 -29.21964 -27.34611 -25.92409 -25.31293 -24.87610 -23.37069 -22.04368 -21.48739 -20.75515 -18.92840 -18.39504 -17.57786 -17.36041 -17.19551 -16.94520 -16.60678 -16.20701 -16.04231 -15.61542 -15.48675 -15.28253 -15.04057 -14.66124 -14.58744 -14.54428 -14.00855 -13.65734 -13.43380 -13.22804 -13.01916 -12.70952 -12.58557 -12.53551 -12.17620 -12.13236 -12.08160 -11.91506 -11.86057 -11.41799 -11.32190 -10.96331 -10.80217 -10.56369 -10.49047 -10.14652 -8.77130 -7.92738 -5.40631 1.46406 1.47324 1.54247 1.56901 2.08482 2.47139 2.76159 2.88879 3.22261 3.47628 3.56998 3.76581 3.77786 3.96690 3.99040 4.05591 4.15047 4.22511 4.28994 4.45618 4.47455 4.51472 4.59976 4.62937 4.70698 4.72721 4.75954 4.82956 4.89196 4.93169 5.04494 5.06235 5.12624 5.23085 5.30588 5.37550 5.54292 5.60109 6.16224 6.24395 6.31755 6.49390 7.04695 7.17087 7.72620 8.26273 9.13228 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035672 B = 0.002790 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.747128 B =10033.986016 C =10371.592871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.389 6.389 13 C 0.080 3.920 14 H 0.071 0.929 15 C 0.140 3.860 16 N -0.711 5.711 17 C 0.518 3.482 18 O -0.581 6.581 19 C -0.134 4.134 20 H 0.123 0.877 21 C -0.104 4.104 22 C -0.148 4.148 23 C 0.049 3.951 24 O -0.390 6.390 25 C 0.074 3.926 26 C 0.116 3.884 27 H 0.252 0.748 28 H -0.002 1.002 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -20.378 -10.524 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.020 3.980 14 H 0.089 0.911 15 C 0.015 3.985 16 N -0.362 5.362 17 C 0.305 3.695 18 O -0.461 6.461 19 C -0.156 4.156 20 H 0.141 0.859 21 C -0.142 4.142 22 C -0.186 4.186 23 C -0.027 4.027 24 O -0.308 6.308 25 C -0.003 4.003 26 C -0.010 4.010 27 H 0.061 0.939 28 H 0.017 0.983 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.372 -20.639 -9.913 23.766 hybrid contribution 0.047 1.643 0.535 1.729 sum 6.419 -18.995 -9.379 22.135 Atomic orbital electron populations 1.70191 1.06762 1.26103 1.55119 1.25842 0.96091 1.01683 1.00942 0.85189 0.78121 0.79181 0.77553 1.20903 1.22302 1.19183 1.19562 0.93095 0.85582 1.41403 0.90950 1.44381 1.34301 1.01938 1.53164 1.21404 0.87947 0.98394 0.90543 1.23232 1.00839 0.83544 0.94723 1.87796 1.42495 1.32062 1.68445 1.22639 0.87644 0.94145 0.93553 0.91124 1.21184 1.01341 0.86891 0.89059 1.45908 1.70508 1.08875 1.10939 1.20910 0.75453 0.82475 0.90643 1.90690 1.53268 1.76347 1.25777 1.22006 1.02577 0.96121 0.94869 0.85877 1.21411 1.02584 0.92269 0.97896 1.22196 0.99374 1.00836 0.96188 1.22853 0.96804 0.82989 1.00056 1.87952 1.91821 1.19074 1.31996 1.22514 0.94180 0.95204 0.88414 1.21609 0.98735 0.86333 0.94369 0.93910 0.98343 0.91516 0.92900 0.87292 0.89462 0.92043 0.74881 0.91316 0.92307 0.90280 0.88838 0.86819 0.92835 0.93121 0.87108 0.91003 0.96580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.68 11.17 21.65 0.24 -54.44 16 2 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 3 Si 0.97 43.84 29.59 68.60 2.03 45.87 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.27 -14.37 9.64 84.03 0.81 -13.55 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 9 N -0.61 -30.43 3.04 -696.72 -2.12 -32.55 16 10 C 0.14 6.78 5.47 86.49 0.47 7.25 16 11 C 0.05 1.94 7.00 72.22 0.51 2.44 16 12 O -0.39 -13.36 10.34 -148.98 -1.54 -14.90 16 13 C 0.08 2.57 2.81 30.70 0.09 2.66 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.14 3.91 5.35 86.38 0.46 4.37 16 16 N -0.71 -16.37 5.41 -463.06 -2.51 -18.87 16 17 C 0.52 12.62 7.16 87.66 0.63 13.25 16 18 O -0.58 -18.90 15.97 -3.05 -0.05 -18.95 16 19 C -0.13 -2.35 2.72 -11.45 -0.03 -2.38 16 20 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 21 C -0.10 -1.77 4.62 30.71 0.14 -1.63 16 22 C -0.15 -1.75 6.14 30.69 0.19 -1.56 16 23 C 0.05 0.62 6.84 72.01 0.49 1.11 16 24 O -0.39 -6.81 10.76 -148.98 -1.60 -8.41 16 25 C 0.07 1.24 6.01 72.01 0.43 1.68 16 26 C 0.12 4.72 6.02 86.36 0.52 5.24 16 27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.07 3.51 6.17 -2.39 -0.01 3.50 16 30 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.41 7.75 7.95 -92.71 -0.74 7.02 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.17 8.03 -2.39 -0.02 1.15 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.11 1.61 7.65 -2.39 -0.02 1.59 16 43 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -68.50 350.26 -0.17 -68.67 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.25 Total: 17.04 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 5.13 Total: 16.54 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.38 Total: -105.86 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -3.19 Total: -42.26 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.50 -0.17 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035304972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.666 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds