Wall clock time and date at job start Tue Mar 31 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99934 * 2 1 4 4 H 1.48489 * 109.47329 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.47310 * 30.00728 * 3 2 1 6 6 H 1.48502 * 109.46839 * 150.00336 * 3 2 1 7 7 C 1.38817 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 196.90841 * 7 2 1 9 9 N 1.36931 * 119.99820 * 16.91182 * 7 2 1 10 10 C 1.47152 * 120.98135 * 206.21158 * 9 7 2 11 11 C 1.53291 * 108.38727 * 230.55931 * 10 9 7 12 12 O 1.42962 * 109.22531 * 307.69767 * 11 10 9 13 13 C 1.42966 * 114.16551 * 62.57924 * 12 11 10 14 14 H 1.08999 * 109.54871 * 57.37146 * 13 12 11 15 15 C 1.52997 * 109.51169 * 177.49620 * 13 12 11 16 16 N 1.46505 * 109.47295 * 299.74715 * 15 13 12 17 17 C 1.34769 * 119.99849 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00219 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00060 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.49239 * 55.02461 * 19 17 16 21 21 C 1.53092 * 109.47669 * 294.99803 * 19 17 16 22 22 C 1.53179 * 109.16102 * 182.40795 * 21 19 17 23 23 C 1.53169 * 109.11072 * 56.93893 * 22 21 19 24 24 C 1.53103 * 109.15651 * 303.14793 * 23 22 21 25 25 O 1.42899 * 109.48249 * 175.05687 * 19 17 16 26 26 C 1.47156 * 120.98497 * 26.23970 * 9 7 2 27 27 H 0.96996 * 119.99962 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.68077 * 350.28170 * 10 9 7 29 29 H 1.08996 * 109.68043 * 110.79865 * 10 9 7 30 30 H 1.09003 * 109.51525 * 67.62383 * 11 10 9 31 31 H 1.08999 * 109.51564 * 187.72128 * 11 10 9 32 32 H 1.08995 * 109.47190 * 179.74591 * 15 13 12 33 33 H 1.09000 * 109.47299 * 59.74855 * 15 13 12 34 34 H 0.96999 * 119.99669 * 0.02562 * 16 15 13 35 35 H 1.08999 * 109.52391 * 62.50422 * 21 19 17 36 36 H 1.09002 * 109.52604 * 302.31298 * 21 19 17 37 37 H 1.09009 * 109.54052 * 176.85202 * 22 21 19 38 38 H 1.09002 * 109.54038 * 297.02001 * 22 21 19 39 39 H 1.08996 * 109.52667 * 62.96878 * 23 22 21 40 40 H 1.09007 * 109.52419 * 183.15901 * 23 22 21 41 41 H 1.09005 * 109.41177 * 297.49820 * 24 23 22 42 42 H 1.09001 * 109.49365 * 177.51024 * 24 23 22 43 43 H 1.09001 * 109.68142 * 9.71987 * 26 9 7 44 44 H 1.09000 * 109.67929 * 249.16060 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2225 0.2715 9 7 1.3700 -2.3622 -0.3460 10 6 1.8343 -3.6635 0.1603 11 6 1.9821 -4.6201 -1.0284 12 8 0.7659 -4.6286 -1.7798 13 6 0.4250 -3.3654 -2.3558 14 1 1.2378 -3.0261 -2.9979 15 6 -0.8538 -3.5095 -3.1833 16 7 -0.6354 -4.4853 -4.2540 17 6 -1.6310 -4.7754 -5.1147 18 8 -2.7081 -4.2291 -5.0025 19 6 -1.4066 -5.7796 -6.2158 20 1 -1.0601 -6.7193 -5.7859 21 6 -0.3526 -5.2437 -7.1882 22 6 -0.1739 -6.2421 -8.3361 23 6 -1.5272 -6.4730 -9.0152 24 6 -2.5364 -6.9594 -7.9717 25 8 -2.6319 -5.9996 -6.9172 26 6 0.1975 -2.3445 -1.2351 27 1 -0.4850 0.8400 0.0004 28 1 2.7977 -3.5421 0.6558 29 1 1.1065 -4.0638 0.8660 30 1 2.8012 -4.2858 -1.6652 31 1 2.1922 -5.6253 -0.6629 32 1 -1.1156 -2.5451 -3.6184 33 1 -1.6657 -3.8506 -2.5409 34 1 0.2259 -4.9224 -4.3434 35 1 0.5950 -5.1170 -6.6648 36 1 -0.6802 -4.2839 -7.5879 37 1 0.5343 -5.8409 -9.0613 38 1 0.2027 -7.1863 -7.9428 39 1 -1.8793 -5.5390 -9.4529 40 1 -1.4189 -7.2247 -9.7972 41 1 -2.2047 -7.9147 -7.5646 42 1 -3.5128 -7.0833 -8.4400 43 1 0.0768 -1.3496 -1.6638 44 1 -0.6955 -2.6123 -0.6704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035336967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:31 Heat of formation + Delta-G solvation = -110.620876 kcal Electronic energy + Delta-G solvation = -24916.756145 eV Core-core repulsion = 21255.609862 eV Total energy + Delta-G solvation = -3661.146283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29456 -38.84309 -38.12643 -34.85199 -34.36587 -33.84098 -32.03158 -31.31001 -30.61088 -27.51080 -26.32386 -24.83618 -24.11611 -23.30135 -21.74477 -20.82621 -20.36976 -19.61215 -17.57523 -17.02517 -16.61575 -16.06513 -15.86801 -15.31673 -15.20321 -14.92498 -14.62740 -14.51432 -14.33840 -13.95719 -13.70951 -13.33177 -13.16953 -12.98534 -12.83184 -12.70034 -12.17846 -11.72156 -11.56492 -11.52392 -11.36932 -11.12500 -10.87391 -10.76649 -10.73855 -10.44069 -10.27707 -10.05498 -9.79613 -9.69633 -9.53696 -9.10121 -8.86419 -8.57786 -6.79162 -5.87082 -3.31206 2.71225 2.87263 3.32998 3.39797 3.41539 3.90024 4.22706 4.41277 4.43927 4.48795 4.51223 4.64416 4.83230 4.90761 5.12608 5.16443 5.25347 5.33113 5.37475 5.46078 5.51796 5.57650 5.60761 5.68526 5.71822 5.83003 5.89923 5.93915 6.00315 6.09150 6.21725 6.34501 6.47166 6.62777 6.75255 6.89953 7.03929 7.45241 7.64392 7.68247 7.80581 8.30049 8.35459 9.07866 9.70784 10.27718 11.20962 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.003140 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.808934 B = 8914.017124 C = 9262.402638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.134 3.866 16 N -0.717 5.717 17 C 0.515 3.485 18 O -0.523 6.523 19 C 0.076 3.924 20 H 0.083 0.917 21 C -0.147 4.147 22 C -0.121 4.121 23 C -0.159 4.159 24 C 0.059 3.941 25 O -0.354 6.354 26 C 0.152 3.848 27 H 0.256 0.744 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -14.426 -15.445 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.010 3.990 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.398 6.398 19 C 0.014 3.986 20 H 0.100 0.900 21 C -0.185 4.185 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.018 4.018 25 O -0.272 6.272 26 C 0.026 3.974 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.236 0.764 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.346 -13.914 -15.290 20.676 hybrid contribution 1.297 0.718 -0.004 1.483 sum 1.643 -13.196 -15.294 20.267 Atomic orbital electron populations 1.70017 1.05243 1.25829 1.53393 1.25072 0.95368 0.98536 1.00630 0.86239 0.79053 0.83415 0.77757 1.21328 1.21621 1.20406 1.19193 0.92652 0.84483 1.42371 0.91315 1.44050 1.33734 1.01376 1.52670 1.21602 0.98630 0.87557 0.93976 1.23003 0.86152 0.99618 0.94015 1.87776 1.42192 1.31538 1.69477 1.23152 0.94963 0.86453 0.95837 0.92590 1.21437 0.97782 0.92360 0.87389 1.45858 1.15342 1.44755 1.31000 1.20085 0.84534 0.83048 0.82368 1.90731 1.24813 1.51645 1.72587 1.21889 0.86634 0.97985 0.92066 0.89958 1.22153 0.98832 1.00432 0.97058 1.21585 0.97347 0.99359 0.97541 1.22225 0.95945 1.02714 0.98776 1.22655 1.00276 0.91113 0.87758 1.88080 1.29874 1.61726 1.47483 1.21313 0.89504 0.97627 0.88994 0.93350 0.91975 0.95528 0.93876 0.90008 0.89893 0.90626 0.76445 0.90078 0.90259 0.90966 0.91504 0.90817 0.90709 0.93064 0.88426 0.88553 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.14 16 2 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.67 3.05 -171.83 -0.52 -15.19 16 10 C 0.11 2.22 6.73 -3.54 -0.02 2.20 16 11 C 0.05 0.85 6.98 37.31 0.26 1.11 16 12 O -0.39 -7.07 10.14 -35.23 -0.36 -7.43 16 13 C 0.06 1.03 2.86 -26.58 -0.08 0.95 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.28 5.37 -4.04 -0.02 2.26 16 16 N -0.72 -10.21 5.41 -60.29 -0.33 -10.53 16 17 C 0.52 7.95 7.18 -10.99 -0.08 7.87 16 18 O -0.52 -10.49 16.51 -14.30 -0.24 -10.73 16 19 C 0.08 0.88 3.05 -27.83 -0.09 0.80 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.15 -1.34 5.37 -26.59 -0.14 -1.48 16 22 C -0.12 -0.85 6.02 -26.55 -0.16 -1.01 16 23 C -0.16 -1.14 6.14 -26.59 -0.16 -1.30 16 24 C 0.06 0.51 6.84 37.21 0.25 0.77 16 25 O -0.35 -4.69 9.95 -55.09 -0.55 -5.24 16 26 C 0.15 3.56 4.73 -3.53 -0.02 3.54 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.40 4.73 8.20 -40.82 -0.33 4.40 16 35 H 0.08 0.63 7.99 -51.93 -0.41 0.21 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -32.89 351.60 -8.96 -41.85 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.37 Total: 2.21 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -0.48 Total: 8.64 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.23 Total: -50.86 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.14 Total: -23.39 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.89 -8.96 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035336967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.771 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds