Wall clock time and date at job start Tue Mar 31 2020 04:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99934 * 2 1 4 4 H 1.48489 * 109.47329 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.47310 * 30.00728 * 3 2 1 6 6 H 1.48502 * 109.46839 * 150.00336 * 3 2 1 7 7 C 1.38817 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 196.90841 * 7 2 1 9 9 N 1.36931 * 119.99820 * 16.91182 * 7 2 1 10 10 C 1.47152 * 120.98135 * 206.21158 * 9 7 2 11 11 C 1.53291 * 108.38727 * 230.55931 * 10 9 7 12 12 O 1.42962 * 109.22531 * 307.69767 * 11 10 9 13 13 C 1.42966 * 114.16551 * 62.57924 * 12 11 10 14 14 H 1.08999 * 109.54871 * 57.37146 * 13 12 11 15 15 C 1.52997 * 109.51169 * 177.49620 * 13 12 11 16 16 N 1.46505 * 109.47295 * 299.74715 * 15 13 12 17 17 C 1.34769 * 119.99849 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00219 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00060 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.49239 * 55.02461 * 19 17 16 21 21 C 1.53092 * 109.47669 * 294.99803 * 19 17 16 22 22 C 1.53179 * 109.16102 * 182.40795 * 21 19 17 23 23 C 1.53169 * 109.11072 * 56.93893 * 22 21 19 24 24 C 1.53103 * 109.15651 * 303.14793 * 23 22 21 25 25 O 1.42899 * 109.48249 * 175.05687 * 19 17 16 26 26 C 1.47156 * 120.98497 * 26.23970 * 9 7 2 27 27 H 0.96996 * 119.99962 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.68077 * 350.28170 * 10 9 7 29 29 H 1.08996 * 109.68043 * 110.79865 * 10 9 7 30 30 H 1.09003 * 109.51525 * 67.62383 * 11 10 9 31 31 H 1.08999 * 109.51564 * 187.72128 * 11 10 9 32 32 H 1.08995 * 109.47190 * 179.74591 * 15 13 12 33 33 H 1.09000 * 109.47299 * 59.74855 * 15 13 12 34 34 H 0.96999 * 119.99669 * 0.02562 * 16 15 13 35 35 H 1.08999 * 109.52391 * 62.50422 * 21 19 17 36 36 H 1.09002 * 109.52604 * 302.31298 * 21 19 17 37 37 H 1.09009 * 109.54052 * 176.85202 * 22 21 19 38 38 H 1.09002 * 109.54038 * 297.02001 * 22 21 19 39 39 H 1.08996 * 109.52667 * 62.96878 * 23 22 21 40 40 H 1.09007 * 109.52419 * 183.15901 * 23 22 21 41 41 H 1.09005 * 109.41177 * 297.49820 * 24 23 22 42 42 H 1.09001 * 109.49365 * 177.51024 * 24 23 22 43 43 H 1.09001 * 109.68142 * 9.71987 * 26 9 7 44 44 H 1.09000 * 109.67929 * 249.16060 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2225 0.2715 9 7 1.3700 -2.3622 -0.3460 10 6 1.8343 -3.6635 0.1603 11 6 1.9821 -4.6201 -1.0284 12 8 0.7659 -4.6286 -1.7798 13 6 0.4250 -3.3654 -2.3558 14 1 1.2378 -3.0261 -2.9979 15 6 -0.8538 -3.5095 -3.1833 16 7 -0.6354 -4.4853 -4.2540 17 6 -1.6310 -4.7754 -5.1147 18 8 -2.7081 -4.2291 -5.0025 19 6 -1.4066 -5.7796 -6.2158 20 1 -1.0601 -6.7193 -5.7859 21 6 -0.3526 -5.2437 -7.1882 22 6 -0.1739 -6.2421 -8.3361 23 6 -1.5272 -6.4730 -9.0152 24 6 -2.5364 -6.9594 -7.9717 25 8 -2.6319 -5.9996 -6.9172 26 6 0.1975 -2.3445 -1.2351 27 1 -0.4850 0.8400 0.0004 28 1 2.7977 -3.5421 0.6558 29 1 1.1065 -4.0638 0.8660 30 1 2.8012 -4.2858 -1.6652 31 1 2.1922 -5.6253 -0.6629 32 1 -1.1156 -2.5451 -3.6184 33 1 -1.6657 -3.8506 -2.5409 34 1 0.2259 -4.9224 -4.3434 35 1 0.5950 -5.1170 -6.6648 36 1 -0.6802 -4.2839 -7.5879 37 1 0.5343 -5.8409 -9.0613 38 1 0.2027 -7.1863 -7.9428 39 1 -1.8793 -5.5390 -9.4529 40 1 -1.4189 -7.2247 -9.7972 41 1 -2.2047 -7.9147 -7.5646 42 1 -3.5128 -7.0833 -8.4400 43 1 0.0768 -1.3496 -1.6638 44 1 -0.6955 -2.6123 -0.6704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035336967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:30 Heat of formation + Delta-G solvation = -133.872858 kcal Electronic energy + Delta-G solvation = -24917.764427 eV Core-core repulsion = 21255.609862 eV Total energy + Delta-G solvation = -3662.154564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35706 -40.21753 -39.33480 -36.48206 -35.89945 -34.60226 -33.30023 -33.02291 -31.86934 -29.12350 -27.70759 -26.06690 -25.04702 -24.82336 -23.28750 -21.90461 -21.36522 -21.08686 -18.97846 -18.56001 -17.71697 -17.50146 -17.07408 -16.64430 -16.41055 -16.12300 -16.08650 -15.54280 -15.43175 -15.39133 -15.03848 -14.81372 -14.62321 -14.47796 -13.91767 -13.61135 -13.53280 -13.18019 -13.00672 -12.68770 -12.54308 -12.50739 -12.20377 -12.15643 -12.08863 -11.93774 -11.88359 -11.40187 -11.30852 -10.87892 -10.73143 -10.56130 -10.47410 -10.18288 -8.76796 -7.91987 -5.39821 1.46340 1.47635 1.51355 1.56775 1.78542 2.46852 2.76339 3.03678 3.23185 3.48426 3.58658 3.76324 3.90735 4.02007 4.03506 4.05460 4.07183 4.20717 4.26813 4.45021 4.49813 4.51411 4.59152 4.65018 4.67892 4.80522 4.82275 4.86963 4.96909 5.03521 5.06977 5.09709 5.17379 5.22632 5.30552 5.37904 5.51990 5.59458 6.11651 6.25548 6.31880 6.52539 7.04409 7.17533 7.73610 8.27140 9.13789 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.003140 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.808934 B = 8914.017124 C = 9262.402638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.076 0.924 9 N -0.614 5.614 10 C 0.100 3.900 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.079 3.921 14 H 0.069 0.931 15 C 0.143 3.857 16 N -0.701 5.701 17 C 0.511 3.489 18 O -0.578 6.578 19 C 0.081 3.919 20 H 0.111 0.889 21 C -0.144 4.144 22 C -0.117 4.117 23 C -0.157 4.157 24 C 0.051 3.949 25 O -0.393 6.393 26 C 0.158 3.842 27 H 0.251 0.749 28 H 0.073 0.927 29 H 0.014 0.986 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.418 0.582 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.067 0.933 44 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -16.520 -16.987 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.019 3.981 14 H 0.087 0.913 15 C 0.019 3.981 16 N -0.354 5.354 17 C 0.298 3.702 18 O -0.457 6.457 19 C 0.020 3.980 20 H 0.128 0.872 21 C -0.182 4.182 22 C -0.155 4.155 23 C -0.194 4.194 24 C -0.025 4.025 25 O -0.312 6.312 26 C 0.032 3.968 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.933 -16.066 -16.844 23.462 hybrid contribution 0.497 1.304 0.541 1.496 sum 3.430 -14.762 -16.303 22.259 Atomic orbital electron populations 1.70188 1.06796 1.26082 1.55140 1.25868 0.96073 1.01762 1.01041 0.85208 0.78065 0.79152 0.77677 1.20957 1.22448 1.19010 1.19568 0.93083 0.85511 1.41343 0.90677 1.44358 1.33671 1.02472 1.53396 1.21847 0.98545 0.86465 0.95622 1.23091 0.85815 1.00727 0.92387 1.87792 1.43109 1.30510 1.69441 1.22728 0.95753 0.85469 0.94143 0.91340 1.21102 0.96457 0.92747 0.87825 1.45638 1.16064 1.43901 1.29844 1.20928 0.83548 0.82967 0.82778 1.90703 1.27054 1.53873 1.74062 1.21934 0.86992 0.97720 0.91323 0.87190 1.22174 0.98471 1.00091 0.97450 1.21614 0.97451 0.99538 0.96856 1.22220 0.95606 1.02736 0.98866 1.22924 1.01404 0.90977 0.87212 1.88028 1.31043 1.63256 1.48922 1.21089 0.88264 0.97575 0.89910 0.93982 0.90862 0.96795 0.92497 0.85970 0.90796 0.92530 0.74521 0.88293 0.92264 0.89667 0.89642 0.92238 0.88276 0.91235 0.87888 0.91513 0.98376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 11.14 21.65 0.24 -55.23 16 2 C -0.05 -2.87 4.95 84.86 0.42 -2.45 16 3 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.27 -14.26 9.65 84.04 0.81 -13.45 16 8 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 9 N -0.61 -30.46 3.05 -697.53 -2.13 -32.59 16 10 C 0.10 3.99 6.73 86.35 0.58 4.57 16 11 C 0.06 1.75 6.98 72.08 0.50 2.25 16 12 O -0.39 -13.25 10.14 -148.98 -1.51 -14.76 16 13 C 0.08 2.88 2.86 30.69 0.09 2.97 16 14 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.14 4.97 5.37 86.38 0.46 5.44 16 16 N -0.70 -19.29 5.41 -463.06 -2.51 -21.80 16 17 C 0.51 15.66 7.18 87.66 0.63 16.29 16 18 O -0.58 -24.04 16.51 15.94 0.26 -23.77 16 19 C 0.08 1.76 3.05 29.88 0.09 1.85 16 20 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 21 C -0.14 -2.30 5.37 30.68 0.16 -2.14 16 22 C -0.12 -1.25 6.02 30.71 0.18 -1.07 16 23 C -0.16 -1.85 6.14 30.69 0.19 -1.66 16 24 C 0.05 0.78 6.84 72.02 0.49 1.28 16 25 O -0.39 -10.15 9.95 -129.99 -1.29 -11.45 16 26 C 0.16 7.64 4.73 86.35 0.41 8.05 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.07 2.70 7.96 -2.38 -0.02 2.68 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.42 8.76 8.20 -92.71 -0.76 7.99 16 35 H 0.10 1.20 7.99 -2.39 -0.02 1.18 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 0.73 8.14 -2.38 -0.02 0.72 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: -1.00 -74.43 351.60 0.35 -74.09 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.22 Total: 17.38 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 5.03 Total: 21.93 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.39 Total: -109.61 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.54 Total: -49.98 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -74.43 0.35 -74.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035336967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.786 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds