Wall clock time and date at job start Tue Mar 31 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48492 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46847 * 59.99628 * 3 2 1 6 6 H 1.48493 * 109.47133 * 300.00061 * 3 2 1 7 7 C 1.38812 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99625 * 154.96905 * 7 2 1 9 9 N 1.36939 * 120.00369 * 334.96921 * 7 2 1 10 10 C 1.47147 * 120.98184 * 153.65262 * 9 7 2 11 11 C 1.53293 * 108.38281 * 129.44086 * 10 9 7 12 12 O 1.42963 * 109.22558 * 52.30612 * 11 10 9 13 13 C 1.42967 * 114.16217 * 297.41533 * 12 11 10 14 14 H 1.08995 * 109.51338 * 302.60896 * 13 12 11 15 15 C 1.52996 * 109.51467 * 182.50525 * 13 12 11 16 16 N 1.46498 * 109.47126 * 64.99836 * 15 13 12 17 17 C 1.34778 * 119.99922 * 180.02562 * 16 15 13 18 18 O 1.21281 * 120.00125 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99844 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.49412 * 38.74934 * 19 17 16 21 21 C 1.54106 * 110.54964 * 275.89302 * 19 17 16 22 22 N 1.47052 * 103.86354 * 241.40935 * 21 19 17 23 23 C 1.33947 * 109.17972 * 359.97438 * 22 21 19 24 24 O 1.21586 * 123.04279 * 179.97438 * 23 22 21 25 25 N 1.33949 * 113.91704 * 0.02562 * 23 22 21 26 26 C 1.47149 * 120.98051 * 333.37000 * 9 7 2 27 27 H 0.97003 * 120.00436 * 174.23601 * 1 2 3 28 28 H 1.09003 * 109.67939 * 249.16288 * 10 9 7 29 29 H 1.09002 * 109.68170 * 9.72018 * 10 9 7 30 30 H 1.09000 * 109.51166 * 172.22512 * 11 10 9 31 31 H 1.09002 * 109.51641 * 292.32322 * 11 10 9 32 32 H 1.08994 * 109.47104 * 185.00358 * 15 13 12 33 33 H 1.09001 * 109.46937 * 305.00148 * 15 13 12 34 34 H 0.97003 * 120.00027 * 0.02562 * 16 15 13 35 35 H 1.09008 * 110.54697 * 359.97438 * 21 19 17 36 36 H 1.08994 * 110.55353 * 122.81249 * 21 19 17 37 37 H 0.97000 * 125.41046 * 179.97438 * 22 21 19 38 38 H 0.96998 * 125.41200 * 179.97438 * 25 23 22 39 39 H 1.09002 * 109.68220 * 350.28056 * 26 9 7 40 40 H 1.08997 * 109.68485 * 110.83386 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0140 -1.2463 -0.3952 9 7 1.4219 -2.3322 0.5028 10 6 1.8244 -3.6678 0.0344 11 6 2.1222 -4.5402 1.2593 12 8 1.0088 -4.4903 2.1547 13 6 0.7377 -3.1883 2.6793 14 1 1.6230 -2.8101 3.1905 15 6 -0.4279 -3.2679 3.6673 16 7 -0.0337 -4.0768 4.8234 17 6 -0.9067 -4.2858 5.8286 18 8 -2.0185 -3.8040 5.7764 19 6 -0.5011 -5.1174 7.0181 20 1 0.5343 -4.9135 7.2910 21 6 -0.7008 -6.6167 6.7234 22 7 -1.6863 -7.0449 7.7273 23 6 -2.0212 -5.9963 8.4905 24 8 -2.8218 -6.0689 9.4027 25 7 -1.3950 -4.8601 8.1571 26 6 0.3729 -2.2469 1.5313 27 1 -0.4851 -0.8358 -0.0844 28 1 1.0155 -4.1127 -0.5452 29 1 2.7182 -3.5860 -0.5841 30 1 2.2878 -5.5696 0.9415 31 1 3.0134 -4.1671 1.7640 32 1 -0.6920 -2.2639 3.9992 33 1 -1.2874 -3.7270 3.1788 34 1 0.8556 -4.4619 4.8653 35 1 -1.0939 -6.7597 5.7168 36 1 0.2356 -7.1598 6.8506 37 1 -2.0381 -7.9440 7.8219 38 1 -1.5125 -4.0036 8.5970 39 1 0.3060 -1.2246 1.9035 40 1 -0.5845 -2.5463 1.1049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035494942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:31 Heat of formation + Delta-G solvation = -68.337828 kcal Electronic energy + Delta-G solvation = -24459.150120 eV Core-core repulsion = 20696.297024 eV Total energy + Delta-G solvation = -3762.853096 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55458 -39.53323 -38.64571 -36.45096 -35.13454 -34.67521 -33.30182 -31.66127 -31.15681 -29.51548 -27.31588 -25.82899 -24.01259 -23.21206 -22.07065 -21.95397 -20.84073 -19.74880 -18.32812 -17.84387 -17.57815 -16.64128 -16.30332 -16.02578 -15.75769 -15.17102 -15.06139 -14.68389 -14.38778 -14.26385 -14.09885 -13.77273 -13.69798 -13.41556 -13.23310 -13.02025 -12.71816 -12.24516 -11.88947 -11.28877 -10.84414 -10.71692 -10.66094 -10.59335 -10.40089 -10.24610 -10.09159 -9.69689 -9.62026 -9.34053 -9.16110 -9.13591 -8.49860 -7.05492 -6.20622 -3.39042 2.21832 2.50416 2.75975 3.07367 3.43179 3.45302 3.58676 3.69576 3.90275 3.99664 4.36758 4.44884 4.45947 4.87475 4.90529 5.06305 5.25640 5.29173 5.29972 5.37116 5.61164 5.71426 5.77978 5.85386 5.97299 6.10158 6.24717 6.36194 6.51329 6.66741 6.68199 6.84005 6.87876 7.05395 7.33367 7.55242 7.81958 8.00558 8.34656 8.40011 8.91542 9.66992 10.09360 11.07402 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.003136 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.398707 B = 8925.020465 C = 9611.044398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.023 4.023 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.355 4.355 8 H 0.060 0.940 9 N -0.601 5.601 10 C 0.110 3.890 11 C 0.050 3.950 12 O -0.389 6.389 13 C 0.062 3.938 14 H 0.061 0.939 15 C 0.130 3.870 16 N -0.713 5.713 17 C 0.497 3.503 18 O -0.523 6.523 19 C 0.104 3.896 20 H 0.117 0.883 21 C 0.105 3.895 22 N -0.739 5.739 23 C 0.706 3.294 24 O -0.586 6.586 25 N -0.714 5.714 26 C 0.130 3.870 27 H 0.270 0.730 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.404 0.596 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.432 0.568 38 H 0.435 0.565 39 H 0.088 0.912 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -13.256 11.311 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.225 4.225 3 Si 0.899 3.101 4 H -0.218 1.218 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.484 4.484 8 H 0.078 0.922 9 N -0.326 5.326 10 C -0.016 4.016 11 C -0.028 4.028 12 O -0.308 6.308 13 C 0.002 3.998 14 H 0.079 0.921 15 C 0.007 3.993 16 N -0.365 5.365 17 C 0.279 3.721 18 O -0.398 6.398 19 C -0.007 4.007 20 H 0.134 0.866 21 C -0.021 4.021 22 N -0.403 5.403 23 C 0.405 3.595 24 O -0.463 6.463 25 N -0.376 5.376 26 C 0.003 3.997 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.274 0.726 38 H 0.277 0.723 39 H 0.107 0.893 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.378 -11.405 11.807 16.760 hybrid contribution 0.760 -1.603 -0.336 1.806 sum 4.138 -13.008 11.471 17.830 Atomic orbital electron populations 1.70742 1.06603 1.30483 1.47353 1.25914 0.96518 1.01574 0.98501 0.83463 0.74308 0.75410 0.76883 1.21779 1.21510 1.21944 1.20013 0.97684 0.88138 1.42549 0.92214 1.44113 1.45008 1.01302 1.42130 1.21602 0.98775 0.87037 0.94172 1.23019 0.88230 0.99846 0.91695 1.87788 1.51024 1.28907 1.63070 1.22886 0.96511 0.85451 0.94927 0.92141 1.21467 0.97535 0.95956 0.84372 1.45960 1.17048 1.53267 1.20249 1.20699 0.85568 0.81765 0.84021 1.90780 1.20499 1.49635 1.78903 1.21859 0.96788 0.95099 0.86953 0.86575 1.22256 0.94338 0.91198 0.94294 1.45045 1.47682 1.12095 1.35433 1.15849 0.80434 0.81267 0.81927 1.91003 1.37705 1.84626 1.32990 1.44823 1.46684 1.11976 1.34158 1.21394 0.91546 0.98762 0.88026 0.91862 0.95665 0.91744 0.89761 0.93641 0.89638 0.90507 0.76178 0.89264 0.88513 0.72568 0.72298 0.89347 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.32 12.44 55.49 0.69 -25.63 16 2 C -0.02 -0.61 4.71 -17.43 -0.08 -0.69 16 3 Si 1.07 24.21 29.99 -169.99 -5.10 19.11 16 4 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.36 -9.42 9.54 -15.06 -0.14 -9.56 16 8 H 0.06 1.59 7.94 -52.49 -0.42 1.17 16 9 N -0.60 -14.21 2.92 -172.08 -0.50 -14.71 16 10 C 0.11 2.16 6.74 -3.54 -0.02 2.13 16 11 C 0.05 0.78 6.98 37.31 0.26 1.04 16 12 O -0.39 -6.29 10.33 -35.23 -0.36 -6.65 16 13 C 0.06 1.03 2.80 -26.79 -0.07 0.95 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 1.90 5.34 -4.04 -0.02 1.87 16 16 N -0.71 -7.76 5.50 -60.30 -0.33 -8.09 16 17 C 0.50 5.73 6.93 -10.99 -0.08 5.65 16 18 O -0.52 -8.60 16.60 5.56 0.09 -8.50 16 19 C 0.10 0.80 4.17 -68.20 -0.28 0.52 16 20 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 21 C 0.11 0.65 7.70 -3.16 -0.02 0.63 16 22 N -0.74 -6.31 6.37 -64.70 -0.41 -6.72 16 23 C 0.71 8.77 8.92 -88.40 -0.79 7.98 16 24 O -0.59 -9.78 18.05 5.29 0.10 -9.69 16 25 N -0.71 -7.32 5.63 -59.33 -0.33 -7.65 16 26 C 0.13 2.81 4.15 -3.75 -0.02 2.79 16 27 H 0.27 7.88 6.61 -40.82 -0.27 7.61 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 3.32 8.47 -40.82 -0.35 2.98 16 35 H 0.09 0.59 7.72 -51.92 -0.40 0.19 16 36 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.43 2.85 8.96 -40.82 -0.37 2.48 16 38 H 0.43 4.18 8.96 -40.82 -0.37 3.81 16 39 H 0.09 2.14 6.44 -51.93 -0.33 1.80 16 40 H 0.03 0.67 7.75 -51.93 -0.40 0.27 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -36.12 333.10 -7.91 -44.03 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.49 Total: 6.17 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -1.27 Total: 13.31 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.89 Total: -62.80 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.18 Total: -24.84 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.10 Total: 19.11 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.12 -7.91 -44.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035494942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.306 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds