Wall clock time and date at job start Tue Mar 31 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48500 * 109.47002 * 240.00273 * 3 2 1 5 5 H 1.48501 * 109.46912 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46963 * 120.00203 * 3 2 1 7 7 C 1.38811 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00157 * 190.84577 * 7 2 1 9 9 N 1.36935 * 119.99735 * 10.85696 * 7 2 1 10 10 C 1.47155 * 120.98646 * 31.02950 * 9 7 2 11 11 C 1.53287 * 108.38578 * 129.48877 * 10 9 7 12 12 O 1.42967 * 109.22672 * 52.30368 * 11 10 9 13 13 C 1.42961 * 114.16211 * 297.41724 * 12 11 10 14 14 C 1.47157 * 120.97824 * 211.05120 * 9 7 2 15 15 H 1.09004 * 109.71169 * 110.77177 * 14 9 7 16 16 C 1.52994 * 109.68374 * 350.23372 * 14 9 7 17 17 N 1.46508 * 109.47154 * 61.30898 * 16 14 9 18 18 C 1.34774 * 120.00225 * 179.72710 * 17 16 14 19 19 O 1.21282 * 119.99925 * 0.27262 * 18 17 16 20 20 C 1.50696 * 120.00180 * 180.27399 * 18 17 16 21 21 H 1.09005 * 109.51977 * 300.12402 * 20 18 17 22 22 C 1.53172 * 109.52539 * 180.02562 * 20 18 17 23 23 C 1.53175 * 109.03744 * 183.11525 * 22 20 18 24 24 C 1.53096 * 109.16697 * 56.97835 * 23 22 20 25 25 O 1.42904 * 109.41058 * 302.39588 * 24 23 22 26 26 C 1.42899 * 114.10378 * 61.15448 * 25 24 23 27 27 H 0.96995 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.67820 * 9.76176 * 10 9 7 29 29 H 1.09004 * 109.70548 * 249.23042 * 10 9 7 30 30 H 1.09008 * 109.51489 * 292.37799 * 11 10 9 31 31 H 1.09000 * 109.51292 * 172.22529 * 11 10 9 32 32 H 1.09003 * 109.51568 * 302.65465 * 13 12 11 33 33 H 1.09004 * 109.55347 * 182.52704 * 13 12 11 34 34 H 1.09000 * 109.47453 * 301.31056 * 16 14 9 35 35 H 1.09003 * 109.47276 * 181.30644 * 16 14 9 36 36 H 0.97000 * 119.99199 * 359.97438 * 17 16 14 37 37 H 1.09004 * 109.54218 * 302.97912 * 22 20 18 38 38 H 1.08999 * 109.54522 * 63.15191 * 22 20 18 39 39 H 1.09005 * 109.52368 * 176.88233 * 23 22 20 40 40 H 1.08993 * 109.52296 * 297.00747 * 23 22 20 41 41 H 1.09006 * 109.47862 * 62.37330 * 24 23 22 42 42 H 1.08999 * 109.47921 * 182.40052 * 24 23 22 43 43 H 1.09001 * 109.48334 * 178.85939 * 26 25 24 44 44 H 1.08997 * 109.47826 * 58.82291 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0758 -1.2105 0.1765 9 7 1.3439 -2.3775 -0.2223 10 6 0.1535 -2.4214 -1.0863 11 6 0.3403 -3.5472 -2.1098 12 8 0.6718 -4.7569 -1.4238 13 6 1.9035 -4.7006 -0.7002 14 6 1.7968 -3.6339 0.3956 15 1 1.0774 -3.9530 1.1497 16 6 3.1659 -3.4243 1.0456 17 7 3.0575 -2.4083 2.0956 18 6 4.1448 -2.0614 2.8126 19 8 5.2140 -2.5868 2.5852 20 6 4.0320 -1.0209 3.8967 21 1 3.6890 -0.0806 3.4649 22 6 5.4010 -0.8135 4.5517 23 6 5.2579 0.1877 5.7021 24 6 4.2125 -0.3312 6.6929 25 8 2.9719 -0.5317 6.0126 26 6 3.0338 -1.4930 4.9572 27 1 -0.4849 0.8400 0.0004 28 1 0.0407 -1.4692 -1.6045 29 1 -0.7322 -2.6178 -0.4821 30 1 1.1457 -3.2854 -2.7962 31 1 -0.5845 -3.6877 -2.6693 32 1 2.7146 -4.4430 -1.3814 33 1 2.1042 -5.6708 -0.2455 34 1 3.8793 -3.0925 0.2913 35 1 3.5084 -4.3626 1.4820 36 1 2.2024 -1.9879 2.2772 37 1 5.7676 -1.7641 4.9391 38 1 6.1031 -0.4253 3.8139 39 1 6.2164 0.2993 6.2092 40 1 4.9400 1.1527 5.3078 41 1 4.5514 -1.2764 7.1172 42 1 4.0756 0.3976 7.4918 43 1 2.0476 -1.6012 4.5056 44 1 3.3572 -2.4533 5.3587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050837721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:03 Heat of formation + Delta-G solvation = -108.716315 kcal Electronic energy + Delta-G solvation = -26043.277476 eV Core-core repulsion = 22382.213782 eV Total energy + Delta-G solvation = -3661.063695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04763 -38.75131 -38.03943 -35.37786 -33.66717 -33.44466 -31.94209 -31.02056 -30.32574 -27.25254 -25.86988 -24.82681 -23.92033 -23.47040 -21.78298 -20.65660 -19.79110 -19.40132 -17.30324 -16.44141 -16.29138 -16.01406 -15.78913 -15.54670 -14.93945 -14.90476 -14.59527 -14.27938 -14.02640 -13.82421 -13.54512 -13.36516 -13.10284 -12.84546 -12.64587 -12.36386 -11.90662 -11.63043 -11.45315 -11.11855 -11.05327 -10.92721 -10.88502 -10.77065 -10.44480 -10.36947 -10.29279 -10.06968 -9.70299 -9.62628 -9.32055 -8.97684 -8.69989 -8.31863 -6.76180 -5.93454 -3.43341 3.08560 3.26679 3.34245 3.35771 3.64710 3.92747 4.31679 4.50847 4.72085 4.86485 4.90918 4.97010 5.11084 5.17457 5.24191 5.36045 5.41227 5.55557 5.62299 5.69312 5.70927 5.78671 5.83966 5.89749 5.96010 6.00304 6.07107 6.13312 6.18585 6.21072 6.30987 6.33262 6.49796 6.72602 7.04680 7.05818 7.13983 7.46561 7.66907 7.84248 8.15446 8.26376 8.76064 9.02738 9.63109 10.22305 11.13007 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.005492 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.312469 B = 5097.417164 C = 6120.694318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.897 3.103 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.135 3.865 17 N -0.693 5.693 18 C 0.516 3.484 19 O -0.561 6.561 20 C -0.145 4.145 21 H 0.107 0.893 22 C -0.099 4.099 23 C -0.157 4.157 24 C 0.058 3.942 25 O -0.377 6.377 26 C 0.074 3.926 27 H 0.257 0.743 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -3.133 7.612 9.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.727 3.273 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.344 5.344 18 C 0.301 3.699 19 O -0.441 6.441 20 C -0.166 4.166 21 H 0.125 0.875 22 C -0.137 4.137 23 C -0.195 4.195 24 C -0.019 4.019 25 O -0.295 6.295 26 C -0.003 4.003 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.253 0.747 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.472 -3.414 7.485 9.880 hybrid contribution 0.392 1.378 -0.192 1.446 sum 5.864 -2.036 7.293 9.577 Atomic orbital electron populations 1.69962 1.05158 1.25851 1.53243 1.25142 0.95310 0.98193 1.00291 0.86457 0.78969 0.83511 0.78374 1.20990 1.21478 1.20673 1.19169 0.91289 0.83309 1.44912 0.91002 1.44075 1.31958 1.02849 1.52749 1.21415 0.88865 0.96839 0.91036 1.23358 0.99131 0.86520 0.95316 1.87802 1.40236 1.36050 1.67018 1.22862 0.86682 0.98685 0.94073 1.21431 0.93677 0.89344 0.93786 0.94120 1.21170 0.97554 0.90330 0.89861 1.46052 1.12443 1.41092 1.34828 1.20236 0.84164 0.82873 0.82635 1.90632 1.28010 1.55609 1.69876 1.21982 0.98583 1.00263 0.95817 0.87471 1.21363 0.95414 0.99692 0.97255 1.22234 0.99751 1.00067 0.97430 1.22607 0.84698 1.00289 0.94304 1.87972 1.31637 1.61779 1.48135 1.22514 0.99709 0.91069 0.86989 0.93331 0.88950 0.95244 0.94128 0.90230 0.93533 0.89936 0.91499 0.92353 0.74675 0.91145 0.90842 0.90729 0.90911 0.93209 0.88961 0.88001 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.89 11.13 55.49 0.62 -23.27 16 2 C 0.01 0.27 5.06 -17.43 -0.09 0.18 16 3 Si 0.90 20.60 29.57 -169.99 -5.03 15.58 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.26 7.11 -15.06 -0.11 -6.37 16 8 H 0.07 1.78 5.81 -52.49 -0.30 1.48 16 9 N -0.59 -13.35 3.03 -164.30 -0.50 -13.85 16 10 C 0.14 3.23 5.38 -3.54 -0.02 3.21 16 11 C 0.03 0.66 6.98 37.31 0.26 0.92 16 12 O -0.39 -7.56 10.74 -35.23 -0.38 -7.94 16 13 C 0.06 0.98 6.29 37.31 0.23 1.21 16 14 C 0.12 2.39 3.20 -67.42 -0.22 2.17 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.45 4.44 -4.04 -0.02 2.43 16 17 N -0.69 -12.64 3.71 -60.29 -0.22 -12.86 16 18 C 0.52 9.29 7.15 -10.99 -0.08 9.21 16 19 O -0.56 -11.52 15.97 5.56 0.09 -11.43 16 20 C -0.14 -2.23 2.73 -91.64 -0.25 -2.48 16 21 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 22 C -0.10 -1.36 4.62 -26.55 -0.12 -1.48 16 23 C -0.16 -1.75 6.14 -26.59 -0.16 -1.92 16 24 C 0.06 0.64 6.84 37.21 0.25 0.89 16 25 O -0.38 -5.33 10.76 -35.23 -0.38 -5.71 16 26 C 0.07 1.03 6.01 37.21 0.22 1.26 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.09 2.28 6.32 -51.93 -0.33 1.95 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.42 7.91 6.87 -40.82 -0.28 7.63 16 37 H 0.07 0.96 8.03 -51.93 -0.42 0.55 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.42 7.66 -51.93 -0.40 1.02 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -28.63 342.69 -7.90 -36.53 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.17 Total: 8.54 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.09 Total: 9.23 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.10 Total: -49.98 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.67 Total: -25.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.63 -7.90 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050837721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.186 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds