Wall clock time and date at job start Tue Mar 31 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46807 * 270.00173 * 3 2 1 5 5 H 1.48492 * 109.47170 * 30.00166 * 3 2 1 6 6 H 1.48499 * 109.47019 * 150.00192 * 3 2 1 7 7 C 1.38808 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.46374 * 125.49710 * 180.32007 * 9 7 2 11 11 C 1.53746 * 108.45519 * 181.45883 * 10 9 7 12 12 H 1.09006 * 113.83869 * 250.87478 * 11 10 9 13 13 C 1.55174 * 108.31495 * 123.93456 * 11 10 9 14 14 C 1.54859 * 101.73519 * 285.38827 * 13 11 10 15 15 N 1.47413 * 104.81715 * 322.76701 * 14 13 11 16 16 C 1.34773 * 125.58808 * 204.40004 * 15 14 13 17 17 O 1.21279 * 119.99979 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00006 * 0.02852 * 16 15 14 19 19 F 1.39895 * 110.56675 * 312.67536 * 18 16 15 20 20 C 1.54517 * 110.50933 * 190.00067 * 18 16 15 21 21 C 1.54479 * 104.06037 * 241.35273 * 20 18 16 22 22 O 1.44433 * 104.80518 * 336.02227 * 21 20 18 23 23 C 1.44422 * 105.27452 * 40.51075 * 22 21 20 24 24 C 1.46713 * 108.82264 * 24.66697 * 15 14 13 25 25 H 1.08997 * 111.53173 * 235.84049 * 24 15 14 26 26 C 1.46710 * 125.30609 * 0.02562 * 9 7 2 27 27 H 0.96998 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.93723 * 61.46674 * 10 9 7 29 29 H 1.08996 * 109.21419 * 301.02647 * 10 9 7 30 30 H 1.08997 * 110.97616 * 167.27098 * 13 11 10 31 31 H 1.09000 * 111.00181 * 43.51389 * 13 11 10 32 32 H 1.08998 * 110.36875 * 203.93930 * 14 13 11 33 33 H 1.08994 * 110.46546 * 81.64978 * 14 13 11 34 34 H 1.08991 * 110.51174 * 359.97438 * 20 18 16 35 35 H 1.08995 * 110.51247 * 122.71152 * 20 18 16 36 36 H 1.08997 * 110.37024 * 94.85221 * 21 20 18 37 37 H 1.08995 * 110.37315 * 217.18852 * 21 20 18 38 38 H 1.08995 * 110.37333 * 200.65712 * 23 22 21 39 39 H 1.09001 * 110.37394 * 78.31441 * 23 22 21 40 40 H 1.08998 * 109.98992 * 42.70070 * 26 9 7 41 41 H 1.09006 * 110.02201 * 281.40547 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.9327 -3.7199 0.0044 11 6 0.8082 -4.7676 -0.0364 12 1 0.6819 -5.3148 0.8978 13 6 1.0466 -5.6914 -1.2602 14 6 0.6222 -4.7749 -2.4341 15 7 -0.5322 -4.0153 -1.9209 16 6 -1.5021 -3.4589 -2.6734 17 8 -2.4088 -2.8529 -2.1428 18 6 -1.4599 -3.5897 -4.1741 19 9 -0.1830 -3.2859 -4.6582 20 6 -2.5187 -2.6733 -4.8273 21 6 -3.4510 -3.6514 -5.5760 22 8 -2.6406 -4.8224 -5.8168 23 6 -1.8778 -5.0130 -4.6054 24 6 -0.4489 -3.9588 -0.4573 25 1 -1.3521 -4.3510 0.0102 26 6 -0.1352 -2.5238 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 2.5276 -3.8532 0.9080 29 1 2.5688 -3.8281 -0.8740 30 1 0.4145 -6.5779 -1.2089 31 1 2.0977 -5.9684 -1.3417 32 1 0.3292 -5.3739 -3.2963 33 1 1.4334 -4.0978 -2.7014 34 1 -3.0728 -2.1260 -4.0649 35 1 -2.0472 -1.9837 -5.5275 36 1 -4.3106 -3.9058 -4.9560 37 1 -3.7785 -3.2159 -6.5200 38 1 -0.9969 -5.6234 -4.8037 39 1 -2.4962 -5.4761 -3.8365 40 1 -0.5753 -1.8085 -0.6975 41 1 -0.5263 -2.3571 1.0009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076171523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:28 Heat of formation + Delta-G solvation = -80.904162 kcal Electronic energy + Delta-G solvation = -26312.946611 eV Core-core repulsion = 22529.628637 eV Total energy + Delta-G solvation = -3783.317974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.82497 -40.32283 -39.16997 -37.63415 -34.80782 -32.32501 -31.75210 -30.88609 -29.64830 -28.57080 -26.46457 -24.72386 -23.94094 -23.00025 -21.79650 -20.56740 -19.62189 -18.90013 -17.61708 -16.86209 -16.77830 -16.29621 -15.91834 -15.36910 -15.14736 -14.80161 -14.39600 -14.08886 -13.91349 -13.79431 -13.42147 -13.11917 -12.74604 -12.57050 -12.45862 -11.95954 -11.88971 -11.85828 -11.60341 -11.39730 -11.17368 -11.06005 -10.95035 -10.73194 -10.55654 -10.32434 -10.15790 -10.01423 -9.82980 -9.69246 -9.43915 -8.60744 -8.23077 -6.80188 -5.63561 -3.04273 2.65742 3.08787 3.41467 3.45816 3.48391 3.65572 4.00273 4.27458 4.44818 4.50877 4.57395 4.75250 4.89677 4.96992 5.00689 5.09379 5.30479 5.45700 5.48454 5.50670 5.51005 5.59053 5.71112 5.78118 5.83146 5.85429 5.91578 6.00372 6.23698 6.27819 6.40710 6.47635 6.52051 6.64088 6.82532 7.42773 7.65777 7.80801 7.93318 8.32454 8.38906 9.24090 9.85838 10.48025 11.41648 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.005912 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.265334 B = 4734.628389 C = 5656.818668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.142 3.858 11 C -0.109 4.109 12 H 0.098 0.902 13 C -0.124 4.124 14 C 0.100 3.900 15 N -0.586 5.586 16 C 0.521 3.479 17 O -0.513 6.513 18 C 0.076 3.924 19 F -0.181 7.181 20 C -0.171 4.171 21 C 0.047 3.953 22 O -0.366 6.366 23 C 0.037 3.963 24 C 0.112 3.888 25 H 0.081 0.919 26 C 0.155 3.845 27 H 0.253 0.747 28 H 0.021 0.979 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -13.023 -8.063 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.016 3.984 11 C -0.128 4.128 12 H 0.116 0.884 13 C -0.162 4.162 14 C -0.023 4.023 15 N -0.318 5.318 16 C 0.305 3.695 17 O -0.388 6.388 18 C 0.054 3.946 19 F -0.161 7.161 20 C -0.209 4.209 21 C -0.030 4.030 22 O -0.284 6.284 23 C -0.041 4.041 24 C 0.008 3.992 25 H 0.099 0.901 26 C 0.029 3.971 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.986 -12.547 -8.016 15.413 hybrid contribution 0.733 1.085 0.199 1.324 sum -3.253 -11.462 -7.816 14.249 Atomic orbital electron populations 1.69898 1.04777 1.24922 1.56660 1.24823 0.95702 0.97735 1.02114 0.86115 0.78534 0.83529 0.77553 1.21627 1.21636 1.20700 1.18995 0.90381 0.82278 1.44102 0.90472 1.44113 1.01518 0.99855 1.87004 1.21124 0.93454 0.85716 0.98125 1.23077 0.95861 0.96071 0.97830 0.88358 1.22820 1.01940 0.97160 0.94329 1.22431 0.89281 0.93994 0.96550 1.48209 1.23318 1.52609 1.07711 1.19785 0.82426 0.79686 0.87597 1.90736 1.35021 1.40338 1.72713 1.22463 0.81589 0.98194 0.92320 1.92941 1.40061 1.94274 1.88862 1.23554 0.96729 0.98918 1.01688 1.23501 0.93681 0.84829 1.00963 1.89160 1.57376 1.47026 1.34857 1.23964 0.97492 0.93983 0.88638 1.22775 0.97193 1.00399 0.78819 0.90090 1.21683 0.84909 0.90435 1.00026 0.93674 0.96086 0.95742 0.91022 0.89760 0.91463 0.90280 0.86497 0.88580 0.91282 0.88121 0.87117 0.90098 0.87662 0.95913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 10.17 55.49 0.56 -27.19 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.47 10.25 -15.06 -0.15 -6.63 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.35 3.37 -172.24 -0.58 -15.93 16 10 C 0.14 2.84 6.39 -3.72 -0.02 2.82 16 11 C -0.11 -1.75 4.27 -87.86 -0.38 -2.12 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.12 -1.54 6.31 -24.60 -0.16 -1.70 16 14 C 0.10 1.47 5.27 -2.56 -0.01 1.46 16 15 N -0.59 -10.56 3.01 -162.26 -0.49 -11.05 16 16 C 0.52 9.78 6.44 -10.99 -0.07 9.71 16 17 O -0.51 -11.22 15.07 5.56 0.08 -11.14 16 18 C 0.08 1.18 1.18 -90.20 -0.11 1.08 16 19 F -0.18 -3.07 15.50 2.25 0.03 -3.03 16 20 C -0.17 -2.37 6.51 -25.16 -0.16 -2.54 16 21 C 0.05 0.52 7.63 37.93 0.29 0.81 16 22 O -0.37 -4.71 11.65 -35.23 -0.41 -5.12 16 23 C 0.04 0.46 6.32 37.93 0.24 0.70 16 24 C 0.11 2.15 3.65 -66.20 -0.24 1.91 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 C 0.16 3.90 5.17 -3.53 -0.02 3.88 16 27 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.48 6.78 -51.93 -0.35 0.13 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 32 H 0.07 0.80 5.92 -51.93 -0.31 0.49 16 33 H 0.08 1.34 7.49 -51.93 -0.39 0.95 16 34 H 0.12 1.79 6.55 -51.93 -0.34 1.45 16 35 H 0.10 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.17 7.07 -51.93 -0.37 0.80 16 39 H 0.08 0.92 7.86 -51.93 -0.41 0.52 16 40 H 0.11 3.09 5.31 -51.93 -0.28 2.81 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -33.66 320.67 -7.65 -41.32 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.78 Total: 0.66 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.89 Total: 9.07 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.50 Total: -54.17 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.33 Total: -16.26 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.03 Total: -3.03 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.66 -7.65 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076171523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.587 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds