Wall clock time and date at job start Tue Mar 31 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46807 * 270.00173 * 3 2 1 5 5 H 1.48492 * 109.47170 * 30.00166 * 3 2 1 6 6 H 1.48499 * 109.47019 * 150.00192 * 3 2 1 7 7 C 1.38808 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.46374 * 125.49710 * 180.32007 * 9 7 2 11 11 C 1.53746 * 108.45519 * 181.45883 * 10 9 7 12 12 H 1.09006 * 113.83869 * 250.87478 * 11 10 9 13 13 C 1.55174 * 108.31495 * 123.93456 * 11 10 9 14 14 C 1.54859 * 101.73519 * 285.38827 * 13 11 10 15 15 N 1.47413 * 104.81715 * 322.76701 * 14 13 11 16 16 C 1.34773 * 125.58808 * 204.40004 * 15 14 13 17 17 O 1.21279 * 119.99979 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00006 * 0.02852 * 16 15 14 19 19 F 1.39895 * 110.56675 * 312.67536 * 18 16 15 20 20 C 1.54517 * 110.50933 * 190.00067 * 18 16 15 21 21 C 1.54479 * 104.06037 * 241.35273 * 20 18 16 22 22 O 1.44433 * 104.80518 * 336.02227 * 21 20 18 23 23 C 1.44422 * 105.27452 * 40.51075 * 22 21 20 24 24 C 1.46713 * 108.82264 * 24.66697 * 15 14 13 25 25 H 1.08997 * 111.53173 * 235.84049 * 24 15 14 26 26 C 1.46710 * 125.30609 * 0.02562 * 9 7 2 27 27 H 0.96998 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.93723 * 61.46674 * 10 9 7 29 29 H 1.08996 * 109.21419 * 301.02647 * 10 9 7 30 30 H 1.08997 * 110.97616 * 167.27098 * 13 11 10 31 31 H 1.09000 * 111.00181 * 43.51389 * 13 11 10 32 32 H 1.08998 * 110.36875 * 203.93930 * 14 13 11 33 33 H 1.08994 * 110.46546 * 81.64978 * 14 13 11 34 34 H 1.08991 * 110.51174 * 359.97438 * 20 18 16 35 35 H 1.08995 * 110.51247 * 122.71152 * 20 18 16 36 36 H 1.08997 * 110.37024 * 94.85221 * 21 20 18 37 37 H 1.08995 * 110.37315 * 217.18852 * 21 20 18 38 38 H 1.08995 * 110.37333 * 200.65712 * 23 22 21 39 39 H 1.09001 * 110.37394 * 78.31441 * 23 22 21 40 40 H 1.08998 * 109.98992 * 42.70070 * 26 9 7 41 41 H 1.09006 * 110.02201 * 281.40547 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.9327 -3.7199 0.0044 11 6 0.8082 -4.7676 -0.0364 12 1 0.6819 -5.3148 0.8978 13 6 1.0466 -5.6914 -1.2602 14 6 0.6222 -4.7749 -2.4341 15 7 -0.5322 -4.0153 -1.9209 16 6 -1.5021 -3.4589 -2.6734 17 8 -2.4088 -2.8529 -2.1428 18 6 -1.4599 -3.5897 -4.1741 19 9 -0.1830 -3.2859 -4.6582 20 6 -2.5187 -2.6733 -4.8273 21 6 -3.4510 -3.6514 -5.5760 22 8 -2.6406 -4.8224 -5.8168 23 6 -1.8778 -5.0130 -4.6054 24 6 -0.4489 -3.9588 -0.4573 25 1 -1.3521 -4.3510 0.0102 26 6 -0.1352 -2.5238 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 2.5276 -3.8532 0.9080 29 1 2.5688 -3.8281 -0.8740 30 1 0.4145 -6.5779 -1.2089 31 1 2.0977 -5.9684 -1.3417 32 1 0.3292 -5.3739 -3.2963 33 1 1.4334 -4.0978 -2.7014 34 1 -3.0728 -2.1260 -4.0649 35 1 -2.0472 -1.9837 -5.5275 36 1 -4.3106 -3.9058 -4.9560 37 1 -3.7785 -3.2159 -6.5200 38 1 -0.9969 -5.6234 -4.8037 39 1 -2.4962 -5.4761 -3.8365 40 1 -0.5753 -1.8085 -0.6975 41 1 -0.5263 -2.3571 1.0009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076171523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:28 Heat of formation + Delta-G solvation = -104.904304 kcal Electronic energy + Delta-G solvation = -26313.987335 eV Core-core repulsion = 22529.628637 eV Total energy + Delta-G solvation = -3784.358699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.11253 -41.73260 -40.33750 -39.03320 -36.57611 -34.07858 -32.90583 -32.49420 -31.00115 -29.99443 -28.03544 -26.64385 -25.17237 -24.07181 -23.15843 -22.22998 -20.98967 -20.32137 -19.11735 -18.61663 -17.97692 -17.68432 -17.05189 -16.84725 -16.46706 -16.39529 -15.70929 -15.65681 -15.39212 -15.11218 -14.89309 -14.56911 -14.10871 -13.94556 -13.84251 -13.66922 -13.26974 -13.04729 -13.01123 -12.90156 -12.83548 -12.52758 -12.46399 -12.13744 -12.06844 -11.89970 -11.86513 -11.61734 -11.43350 -10.99970 -10.90929 -10.73904 -9.72945 -8.89247 -7.82384 -5.25066 1.22563 1.39716 1.42328 1.51167 1.75801 2.44945 2.65534 2.81785 3.15762 3.28566 3.29451 3.52718 3.55446 3.60599 3.75558 3.93383 3.98461 4.03572 4.16829 4.37387 4.42876 4.47698 4.49124 4.61127 4.68021 4.69798 4.75940 4.81758 4.83836 4.91695 5.09068 5.13956 5.25343 5.34869 5.42397 5.48523 5.53361 5.82812 6.25840 6.40442 6.88665 7.06139 7.77570 8.38221 9.20643 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.005912 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.265334 B = 4734.628389 C = 5656.818668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.620 5.620 10 C 0.133 3.867 11 C -0.095 4.095 12 H 0.129 0.871 13 C -0.105 4.105 14 C 0.092 3.908 15 N -0.588 5.588 16 C 0.509 3.491 17 O -0.557 6.557 18 C 0.072 3.928 19 F -0.191 7.191 20 C -0.176 4.176 21 C 0.054 3.946 22 O -0.372 6.372 23 C 0.047 3.953 24 C 0.114 3.886 25 H 0.090 0.910 26 C 0.163 3.837 27 H 0.242 0.758 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.057 0.943 41 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -16.030 -9.221 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.346 5.346 10 C 0.009 3.991 11 C -0.114 4.114 12 H 0.147 0.853 13 C -0.142 4.142 14 C -0.029 4.029 15 N -0.320 5.320 16 C 0.296 3.704 17 O -0.436 6.436 18 C 0.051 3.949 19 F -0.172 7.172 20 C -0.214 4.214 21 C -0.023 4.023 22 O -0.290 6.290 23 C -0.031 4.031 24 C 0.010 3.990 25 H 0.108 0.892 26 C 0.037 3.963 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -2.775 -15.611 -9.187 18.325 hybrid contribution 0.408 2.061 0.592 2.183 sum -2.367 -13.550 -8.595 16.220 Atomic orbital electron populations 1.70217 1.06405 1.24758 1.58403 1.25710 0.96514 1.01302 1.02808 0.85079 0.77810 0.79123 0.77366 1.21574 1.22257 1.18768 1.19436 0.91017 0.83668 1.42582 0.89703 1.44399 1.01969 1.01448 1.86750 1.21421 0.95021 0.84190 0.98515 1.23117 0.91767 0.95468 1.01068 0.85344 1.22872 1.04418 0.96724 0.90224 1.22687 0.87279 0.93928 0.99023 1.48352 1.23931 1.52504 1.07173 1.20491 0.81987 0.78780 0.89186 1.90709 1.36905 1.42015 1.73966 1.22604 0.81384 1.01079 0.89876 1.92916 1.40945 1.94622 1.88698 1.23592 0.96923 0.99551 1.01340 1.23600 0.92906 0.83660 1.02091 1.89155 1.57545 1.47277 1.35025 1.24019 0.98572 0.91680 0.88812 1.22566 0.99335 0.96987 0.80130 0.89250 1.21315 0.84722 0.93546 0.96720 0.94837 0.95434 0.94850 0.87311 0.87084 0.88013 0.92940 0.88715 0.88375 0.90242 0.85486 0.84746 0.88893 0.92483 1.00020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.97 10.17 21.65 0.22 -60.75 16 2 C -0.07 -4.23 5.48 84.86 0.47 -3.76 16 3 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.24 -13.74 10.25 84.03 0.86 -12.88 16 8 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 9 N -0.62 -32.48 3.37 -698.85 -2.36 -34.83 16 10 C 0.13 5.14 6.39 86.65 0.55 5.70 16 11 C -0.10 -2.77 4.27 -9.01 -0.04 -2.80 16 12 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 13 C -0.10 -2.07 6.31 31.97 0.20 -1.87 16 14 C 0.09 2.45 5.27 86.84 0.46 2.91 16 15 N -0.59 -20.81 3.01 -785.65 -2.36 -23.18 16 16 C 0.51 19.42 6.44 87.66 0.56 19.99 16 17 O -0.56 -25.73 15.07 -3.03 -0.05 -25.78 16 18 C 0.07 2.19 1.18 -10.52 -0.01 2.18 16 19 F -0.19 -6.36 15.50 44.97 0.70 -5.67 16 20 C -0.18 -4.90 6.51 31.61 0.21 -4.69 16 21 C 0.05 1.10 7.63 72.48 0.55 1.65 16 22 O -0.37 -8.50 11.65 -148.98 -1.74 -10.23 16 23 C 0.05 1.02 6.32 72.49 0.46 1.48 16 24 C 0.11 4.37 3.65 46.00 0.17 4.54 16 25 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 26 C 0.16 8.63 5.17 86.60 0.45 9.08 16 27 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.03 1.24 6.78 -2.39 -0.02 1.23 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.72 7.96 -2.39 -0.02 1.70 16 32 H 0.10 1.99 5.92 -2.39 -0.01 1.98 16 33 H 0.05 1.69 7.49 -2.39 -0.02 1.67 16 34 H 0.09 3.08 6.55 -2.39 -0.02 3.06 16 35 H 0.10 2.61 8.06 -2.39 -0.02 2.59 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.13 2.27 7.07 -2.39 -0.02 2.25 16 39 H 0.09 1.84 7.86 -2.39 -0.02 1.82 16 40 H 0.06 3.58 5.31 -2.39 -0.01 3.57 16 41 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 Total: -1.00 -79.77 320.67 2.37 -77.40 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.04 Total: 11.62 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 4.89 Total: 21.51 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -4.50 Total: -118.75 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.78 Total: -36.01 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.70 Total: -5.67 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -79.77 2.37 -77.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076171523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.509 kcal (2) G-P(sol) polarization free energy of solvation -79.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds