Wall clock time and date at job start Tue Mar 31 2020 04:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48491 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46720 * 299.99866 * 3 2 1 6 6 H 1.48500 * 109.46741 * 59.99228 * 3 2 1 7 7 C 1.38811 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00245 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64393 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.26977 * 178.97716 * 10 9 7 12 12 H 1.09007 * 110.72364 * 96.34806 * 11 10 9 13 13 O 1.42903 * 110.71980 * 219.43757 * 11 10 9 14 14 C 1.55157 * 102.94387 * 337.80076 * 11 10 9 15 15 H 1.08991 * 111.00433 * 277.42890 * 14 11 10 16 16 N 1.46504 * 111.00375 * 153.57578 * 14 11 10 17 17 C 1.34773 * 120.00143 * 155.00485 * 16 14 11 18 18 O 1.21284 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00281 * 180.02562 * 17 16 14 20 20 H 1.09002 * 108.94346 * 61.23474 * 19 17 16 21 21 C 1.46284 * 108.95980 * 179.97438 * 19 17 16 22 22 C 1.54209 * 112.07311 * 181.56270 * 21 19 17 23 23 C 1.50418 * 108.76397 * 282.18876 * 22 21 19 24 24 O 1.44188 * 112.77111 * 92.58032 * 23 22 21 25 25 C 1.44193 * 116.92650 * 318.47301 * 24 23 22 26 26 C 1.50415 * 112.77863 * 318.47537 * 25 24 23 27 27 C 1.47418 * 125.65140 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00320 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88420 * 59.55354 * 10 9 7 30 30 H 1.09005 * 109.88001 * 298.39276 * 10 9 7 31 31 H 0.96700 * 114.00311 * 298.54931 * 13 11 10 32 32 H 0.97005 * 120.00075 * 335.00717 * 16 14 11 33 33 H 1.09005 * 108.96109 * 302.22912 * 21 19 17 34 34 H 1.09002 * 108.96299 * 60.98070 * 21 19 17 35 35 H 1.08996 * 109.58468 * 41.97224 * 22 21 19 36 36 H 1.08993 * 109.58526 * 162.26170 * 22 21 19 37 37 H 1.08996 * 108.81689 * 213.42286 * 23 22 21 38 38 H 1.09000 * 108.82448 * 331.83529 * 23 22 21 39 39 H 1.08998 * 108.82042 * 79.32926 * 25 24 23 40 40 H 1.08996 * 108.81752 * 197.73800 * 25 24 23 41 41 H 1.09003 * 109.58951 * 332.78843 * 26 25 24 42 42 H 1.08998 * 109.58341 * 212.36189 * 26 25 24 43 43 H 1.08998 * 110.36742 * 322.93027 * 27 9 7 44 44 H 1.08996 * 110.36629 * 85.14881 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1374 -2.5329 0.0005 11 6 -0.4483 -4.0442 -0.0258 12 1 -0.6346 -4.4172 0.9814 13 8 -1.5628 -4.3163 -0.8778 14 6 0.8520 -4.6563 -0.6104 15 1 0.8569 -4.5968 -1.6986 16 7 1.0293 -6.0395 -0.1613 17 6 1.7595 -6.8992 -0.8990 18 8 2.2695 -6.5278 -1.9348 19 6 1.9414 -8.3222 -0.4374 20 1 0.9650 -8.8035 -0.3814 21 6 2.7674 -9.0358 -1.4112 22 6 2.9677 -10.5159 -1.0272 23 6 4.0054 -10.5978 0.0586 24 8 3.4319 -10.5784 1.3813 25 6 2.3465 -9.6568 1.6089 26 6 2.5769 -8.3159 0.9674 27 6 1.9336 -3.7311 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5575 -2.0525 -0.8831 30 1 -0.5543 -2.0843 0.9023 31 1 -2.3849 -3.8910 -0.5981 32 1 0.6210 -6.3367 0.6669 33 1 2.2865 -8.9854 -2.3882 34 1 3.7422 -8.5517 -1.4712 35 1 2.0267 -10.9300 -0.6654 36 1 3.3029 -11.0774 -1.8992 37 1 4.5720 -11.5207 -0.0655 38 1 4.6858 -9.7520 -0.0406 39 1 1.4297 -10.0867 1.2056 40 1 2.2251 -9.5149 2.6827 41 1 3.6477 -8.1301 0.8833 42 1 2.1153 -7.5366 1.5739 43 1 2.8332 -3.7408 -0.6136 44 1 2.1679 -4.0406 1.0201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076942412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:02 Heat of formation + Delta-G solvation = -108.047596 kcal Electronic energy + Delta-G solvation = -25214.924388 eV Core-core repulsion = 21553.889691 eV Total energy + Delta-G solvation = -3661.034697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59703 -38.92460 -37.80081 -35.12219 -34.80242 -34.17137 -32.66764 -31.61398 -28.60642 -27.90839 -27.04898 -25.75588 -24.37166 -22.04638 -20.83265 -20.60532 -20.34907 -19.89817 -17.73271 -17.09402 -16.90121 -16.73616 -16.06151 -15.61943 -15.55363 -14.71106 -14.40934 -14.11174 -13.97322 -13.93564 -13.56636 -13.30468 -13.11929 -12.74684 -12.66682 -12.45314 -12.09929 -11.73796 -11.55441 -11.48361 -11.28300 -11.10863 -11.05340 -10.91257 -10.84467 -10.65984 -10.15464 -9.95019 -9.86526 -9.77083 -9.67988 -9.31851 -8.85705 -8.65649 -6.94609 -5.79354 -3.13928 2.73643 3.22463 3.37135 3.43070 3.45428 3.53290 4.36825 4.40316 4.43758 4.50897 4.59595 4.64793 4.75242 4.96135 5.11844 5.16745 5.19903 5.27787 5.35511 5.41240 5.48833 5.56158 5.58373 5.63024 5.71701 5.74248 5.80158 5.85654 5.95078 6.05660 6.09092 6.12932 6.49112 6.57941 6.86071 6.96235 7.28938 7.42871 7.64975 7.71416 8.08413 8.14109 8.37956 9.12114 9.72198 10.34965 11.32546 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.003290 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.970425 B = 8509.632368 C = 8910.178630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.564 6.564 14 C 0.137 3.863 15 H 0.105 0.895 16 N -0.714 5.714 17 C 0.514 3.486 18 O -0.537 6.537 19 C -0.103 4.103 20 H 0.096 0.904 21 C -0.110 4.110 22 C -0.152 4.152 23 C 0.061 3.939 24 O -0.396 6.396 25 C 0.065 3.935 26 C -0.149 4.149 27 C 0.131 3.869 28 H 0.253 0.747 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.377 0.623 32 H 0.396 0.604 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -20.381 2.890 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.369 6.369 14 C 0.032 3.968 15 H 0.123 0.877 16 N -0.364 5.364 17 C 0.300 3.700 18 O -0.414 6.414 19 C -0.125 4.125 20 H 0.114 0.886 21 C -0.148 4.148 22 C -0.190 4.190 23 C -0.015 4.015 24 O -0.316 6.316 25 C -0.011 4.011 26 C -0.186 4.186 27 C 0.003 3.997 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.224 0.776 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.684 -20.328 1.941 20.490 hybrid contribution -0.418 1.390 0.519 1.541 sum 1.266 -18.939 2.460 19.140 Atomic orbital electron populations 1.69925 1.04944 1.25131 1.57138 1.24819 0.95790 0.97807 1.01954 0.85988 0.78774 0.83416 0.77259 1.20399 1.21634 1.21694 1.19143 0.90595 0.82057 1.43877 0.90080 1.44252 1.01191 0.99913 1.87421 1.21845 0.85486 0.87797 1.02166 1.23467 0.85566 0.98583 0.91580 0.92528 1.86459 1.20377 1.75330 1.54764 1.22267 0.94368 0.79139 1.01017 0.87746 1.45938 1.53001 1.11443 1.26032 1.20568 0.78207 0.87217 0.83997 1.90718 1.48043 1.78592 1.24028 1.20459 1.01696 0.93648 0.96651 0.88618 1.20498 1.01368 0.94007 0.98938 1.21937 1.00566 0.96990 0.99503 1.22355 0.95000 1.02103 0.82078 1.88254 1.51818 1.61032 1.30449 1.22288 0.89661 0.88337 1.00800 1.22022 1.03138 0.98857 0.94628 1.21839 0.94869 0.85742 0.97227 0.93683 0.92118 0.93284 0.77606 0.76968 0.90658 0.90831 0.90734 0.90108 0.89608 0.92877 0.92915 0.89122 0.89790 0.89672 0.93273 0.95904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.62 10.31 55.49 0.57 -26.05 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.27 3.39 -170.07 -0.58 -15.85 16 10 C 0.15 3.58 5.14 -3.07 -0.02 3.57 16 11 C 0.07 1.24 3.97 -24.90 -0.10 1.14 16 12 H 0.06 0.90 8.01 -51.92 -0.42 0.48 16 13 O -0.56 -9.68 13.39 -35.23 -0.47 -10.15 16 14 C 0.14 2.56 3.15 -65.77 -0.21 2.35 16 15 H 0.10 2.28 7.54 -51.93 -0.39 1.89 16 16 N -0.71 -10.20 4.92 -51.72 -0.25 -10.46 16 17 C 0.51 7.52 7.13 -10.99 -0.08 7.44 16 18 O -0.54 -10.22 15.45 5.55 0.09 -10.13 16 19 C -0.10 -1.05 2.09 -94.34 -0.20 -1.24 16 20 H 0.10 0.82 7.55 -51.93 -0.39 0.42 16 21 C -0.11 -1.12 3.89 -29.29 -0.11 -1.23 16 22 C -0.15 -1.18 5.61 -27.39 -0.15 -1.34 16 23 C 0.06 0.51 6.27 35.87 0.22 0.73 16 24 O -0.40 -3.96 10.88 -35.23 -0.38 -4.34 16 25 C 0.07 0.53 6.26 35.87 0.22 0.75 16 26 C -0.15 -1.31 4.93 -27.40 -0.14 -1.44 16 27 C 0.13 2.77 6.93 -2.52 -0.02 2.75 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 30 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 31 H 0.38 4.95 9.11 45.56 0.42 5.36 16 32 H 0.40 4.41 7.74 -40.82 -0.32 4.09 16 33 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 34 H 0.07 0.84 7.46 -51.93 -0.39 0.45 16 35 H 0.07 0.56 7.15 -51.93 -0.37 0.19 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.46 6.67 -51.93 -0.35 0.12 16 39 H 0.05 0.37 6.67 -51.93 -0.35 0.03 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.83 7.15 -51.93 -0.37 0.46 16 42 H 0.08 0.68 6.99 -51.93 -0.36 0.32 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -33.64 341.98 -7.84 -41.48 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.13 Total: 6.70 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.82 Total: 6.64 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.26 Total: -52.35 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.77 Total: -24.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.64 -7.84 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076942412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.563 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds