Wall clock time and date at job start Tue Mar 31 2020 04:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48491 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46720 * 299.99866 * 3 2 1 6 6 H 1.48500 * 109.46741 * 59.99228 * 3 2 1 7 7 C 1.38811 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00245 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64393 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.26977 * 178.97716 * 10 9 7 12 12 H 1.09007 * 110.72364 * 96.34806 * 11 10 9 13 13 O 1.42903 * 110.71980 * 219.43757 * 11 10 9 14 14 C 1.55157 * 102.94387 * 337.80076 * 11 10 9 15 15 H 1.08991 * 111.00433 * 277.42890 * 14 11 10 16 16 N 1.46504 * 111.00375 * 153.57578 * 14 11 10 17 17 C 1.34773 * 120.00143 * 155.00485 * 16 14 11 18 18 O 1.21284 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00281 * 180.02562 * 17 16 14 20 20 H 1.09002 * 108.94346 * 61.23474 * 19 17 16 21 21 C 1.46284 * 108.95980 * 179.97438 * 19 17 16 22 22 C 1.54209 * 112.07311 * 181.56270 * 21 19 17 23 23 C 1.50418 * 108.76397 * 282.18876 * 22 21 19 24 24 O 1.44188 * 112.77111 * 92.58032 * 23 22 21 25 25 C 1.44193 * 116.92650 * 318.47301 * 24 23 22 26 26 C 1.50415 * 112.77863 * 318.47537 * 25 24 23 27 27 C 1.47418 * 125.65140 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00320 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88420 * 59.55354 * 10 9 7 30 30 H 1.09005 * 109.88001 * 298.39276 * 10 9 7 31 31 H 0.96700 * 114.00311 * 298.54931 * 13 11 10 32 32 H 0.97005 * 120.00075 * 335.00717 * 16 14 11 33 33 H 1.09005 * 108.96109 * 302.22912 * 21 19 17 34 34 H 1.09002 * 108.96299 * 60.98070 * 21 19 17 35 35 H 1.08996 * 109.58468 * 41.97224 * 22 21 19 36 36 H 1.08993 * 109.58526 * 162.26170 * 22 21 19 37 37 H 1.08996 * 108.81689 * 213.42286 * 23 22 21 38 38 H 1.09000 * 108.82448 * 331.83529 * 23 22 21 39 39 H 1.08998 * 108.82042 * 79.32926 * 25 24 23 40 40 H 1.08996 * 108.81752 * 197.73800 * 25 24 23 41 41 H 1.09003 * 109.58951 * 332.78843 * 26 25 24 42 42 H 1.08998 * 109.58341 * 212.36189 * 26 25 24 43 43 H 1.08998 * 110.36742 * 322.93027 * 27 9 7 44 44 H 1.08996 * 110.36629 * 85.14881 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1374 -2.5329 0.0005 11 6 -0.4483 -4.0442 -0.0258 12 1 -0.6346 -4.4172 0.9814 13 8 -1.5628 -4.3163 -0.8778 14 6 0.8520 -4.6563 -0.6104 15 1 0.8569 -4.5968 -1.6986 16 7 1.0293 -6.0395 -0.1613 17 6 1.7595 -6.8992 -0.8990 18 8 2.2695 -6.5278 -1.9348 19 6 1.9414 -8.3222 -0.4374 20 1 0.9650 -8.8035 -0.3814 21 6 2.7674 -9.0358 -1.4112 22 6 2.9677 -10.5159 -1.0272 23 6 4.0054 -10.5978 0.0586 24 8 3.4319 -10.5784 1.3813 25 6 2.3465 -9.6568 1.6089 26 6 2.5769 -8.3159 0.9674 27 6 1.9336 -3.7311 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5575 -2.0525 -0.8831 30 1 -0.5543 -2.0843 0.9023 31 1 -2.3849 -3.8910 -0.5981 32 1 0.6210 -6.3367 0.6669 33 1 2.2865 -8.9854 -2.3882 34 1 3.7422 -8.5517 -1.4712 35 1 2.0267 -10.9300 -0.6654 36 1 3.3029 -11.0774 -1.8992 37 1 4.5720 -11.5207 -0.0655 38 1 4.6858 -9.7520 -0.0406 39 1 1.4297 -10.0867 1.2056 40 1 2.2251 -9.5149 2.6827 41 1 3.6477 -8.1301 0.8833 42 1 2.1153 -7.5366 1.5739 43 1 2.8332 -3.7408 -0.6136 44 1 2.1679 -4.0406 1.0201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076942412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:01 Heat of formation + Delta-G solvation = -135.186022 kcal Electronic energy + Delta-G solvation = -25216.101199 eV Core-core repulsion = 21553.889691 eV Total energy + Delta-G solvation = -3662.211507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65020 -40.08695 -39.12947 -36.69589 -35.68820 -35.63777 -33.79429 -33.11351 -30.28266 -29.07645 -28.41617 -26.78695 -26.02492 -23.13949 -22.32936 -21.93413 -21.38824 -21.00245 -19.17822 -18.59097 -18.15264 -17.66371 -17.41441 -16.84944 -16.46705 -16.36297 -15.86940 -15.41245 -15.29742 -14.89079 -14.60307 -14.48252 -14.39892 -14.15418 -13.94332 -13.77316 -13.33076 -13.19002 -13.12816 -12.79013 -12.74930 -12.41025 -12.34574 -12.07371 -11.91686 -11.87300 -11.76527 -11.54348 -11.38535 -11.07235 -10.80200 -10.69241 -10.40556 -10.17451 -8.99367 -7.91367 -5.28579 1.44444 1.45809 1.55913 1.57409 2.02593 2.45898 2.91620 3.10410 3.29516 3.51114 3.53033 3.62732 3.72733 3.87198 3.96878 4.04094 4.09116 4.15250 4.30230 4.40877 4.43844 4.51207 4.52885 4.61859 4.71512 4.78796 4.81501 4.89966 4.97948 5.09215 5.12880 5.15402 5.23933 5.33924 5.36095 5.41669 5.45705 5.63535 6.11102 6.34312 6.52361 6.83781 7.02477 7.23262 7.66736 8.28895 9.18515 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.003290 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.970425 B = 8509.632368 C = 8910.178630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.160 3.840 11 C 0.092 3.908 12 H 0.096 0.904 13 O -0.570 6.570 14 C 0.152 3.848 15 H 0.069 0.931 16 N -0.699 5.699 17 C 0.511 3.489 18 O -0.587 6.587 19 C -0.091 4.091 20 H 0.124 0.876 21 C -0.110 4.110 22 C -0.141 4.141 23 C 0.058 3.942 24 O -0.414 6.414 25 C 0.063 3.937 26 C -0.142 4.142 27 C 0.132 3.868 28 H 0.250 0.750 29 H 0.020 0.980 30 H 0.028 0.972 31 H 0.396 0.604 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -22.386 4.305 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.034 3.966 11 C 0.031 3.969 12 H 0.114 0.886 13 O -0.378 6.378 14 C 0.045 3.955 15 H 0.087 0.913 16 N -0.351 5.351 17 C 0.299 3.701 18 O -0.466 6.466 19 C -0.112 4.112 20 H 0.142 0.858 21 C -0.148 4.148 22 C -0.178 4.178 23 C -0.018 4.018 24 O -0.334 6.334 25 C -0.012 4.012 26 C -0.180 4.180 27 C 0.005 3.995 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.246 0.754 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.048 0.952 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.322 -22.379 3.393 22.674 hybrid contribution -0.295 2.002 0.036 2.024 sum 1.026 -20.377 3.429 20.689 Atomic orbital electron populations 1.70123 1.06132 1.25506 1.57815 1.25645 0.96747 1.00946 1.02044 0.84985 0.78087 0.79192 0.76888 1.19268 1.21925 1.21293 1.19477 0.91004 0.83501 1.43750 0.90160 1.44522 1.02293 1.00822 1.87378 1.21657 0.84344 0.91420 0.99167 1.23175 0.85720 0.94473 0.93506 0.88609 1.86425 1.21005 1.75256 1.55082 1.21721 0.93835 0.81152 0.98805 0.91327 1.45711 1.53047 1.09477 1.26846 1.21454 0.76795 0.88775 0.83068 1.90705 1.49859 1.79723 1.26322 1.20497 1.03317 0.90124 0.97264 0.85792 1.20490 1.00143 0.95719 0.98435 1.21865 1.01020 0.95047 0.99888 1.22423 0.95094 1.02484 0.81776 1.88236 1.52514 1.61528 1.31165 1.22408 0.89734 0.87369 1.01727 1.22002 1.02185 1.00136 0.93699 1.21930 0.94853 0.84678 0.98036 0.94105 0.96179 0.95431 0.75377 0.74505 0.92057 0.92820 0.89626 0.88747 0.88214 0.93840 0.91287 0.87686 0.91261 0.88435 0.95161 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.91 10.31 21.65 0.22 -55.69 16 2 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 3 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.25 -14.14 10.28 84.03 0.86 -13.28 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -32.29 3.39 -691.98 -2.35 -34.64 16 10 C 0.16 7.64 5.14 86.73 0.45 8.09 16 11 C 0.09 3.20 3.97 31.78 0.13 3.33 16 12 H 0.10 2.68 8.01 -2.38 -0.02 2.66 16 13 O -0.57 -18.65 13.39 -148.98 -2.00 -20.65 16 14 C 0.15 5.59 3.15 46.39 0.15 5.73 16 15 H 0.07 3.07 7.54 -2.39 -0.02 3.05 16 16 N -0.70 -18.63 4.92 -435.94 -2.15 -20.77 16 17 C 0.51 14.40 7.13 87.66 0.63 15.03 16 18 O -0.59 -22.72 15.45 -3.04 -0.05 -22.77 16 19 C -0.09 -1.65 2.09 -13.20 -0.03 -1.67 16 20 H 0.12 1.62 7.55 -2.39 -0.02 1.60 16 21 C -0.11 -2.10 3.89 28.94 0.11 -1.99 16 22 C -0.14 -1.85 5.61 30.17 0.17 -1.68 16 23 C 0.06 0.85 6.27 71.15 0.45 1.30 16 24 O -0.41 -7.21 10.88 -148.98 -1.62 -8.83 16 25 C 0.06 0.80 6.26 71.15 0.45 1.25 16 26 C -0.14 -2.13 4.93 30.16 0.15 -1.98 16 27 C 0.13 5.59 6.93 86.86 0.60 6.19 16 28 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.02 1.11 7.30 -2.39 -0.02 1.09 16 30 H 0.03 1.42 7.51 -2.38 -0.02 1.40 16 31 H 0.40 9.68 9.11 -74.06 -0.67 9.00 16 32 H 0.42 7.74 7.74 -92.70 -0.72 7.02 16 33 H 0.06 1.34 7.93 -2.38 -0.02 1.32 16 34 H 0.05 1.23 7.46 -2.39 -0.02 1.21 16 35 H 0.09 0.98 7.15 -2.39 -0.02 0.96 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 0.72 6.67 -2.39 -0.02 0.70 16 39 H 0.07 0.67 6.67 -2.39 -0.02 0.66 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.27 7.15 -2.39 -0.02 1.26 16 42 H 0.10 1.23 6.99 -2.39 -0.02 1.21 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.81 341.98 -1.71 -77.52 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.37 Total: 20.64 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 4.57 Total: 17.35 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.27 Total: -111.10 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -3.66 Total: -52.25 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.81 -1.71 -77.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076942412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.667 kcal (2) G-P(sol) polarization free energy of solvation -75.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds