Wall clock time and date at job start Tue Mar 31 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.52580 * 2 1 4 4 O 1.21282 * 120.00474 * 240.00143 * 3 2 1 5 5 N 1.34783 * 119.99687 * 59.99957 * 3 2 1 6 6 C 1.46493 * 119.99710 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.89195 * 31.12418 * 6 5 3 8 8 C 1.54912 * 111.00575 * 267.19593 * 6 5 3 9 9 N 1.47427 * 104.83354 * 204.92221 * 8 6 5 10 10 C 1.36936 * 125.64509 * 204.11090 * 9 8 6 11 11 H 1.07994 * 120.00259 * 359.97438 * 10 9 8 12 12 C 1.38818 * 119.99615 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00161 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99593 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47285 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46979 * 120.00363 * 14 12 10 17 17 H 1.48498 * 109.46777 * 239.99758 * 14 12 10 18 18 C 1.47020 * 108.70164 * 24.12342 * 9 8 6 19 19 C 1.54313 * 107.27608 * 358.94461 * 18 9 8 20 20 H 1.09004 * 110.87354 * 96.23684 * 19 18 9 21 21 O 1.42899 * 110.72445 * 219.44344 * 19 18 9 22 22 C 1.53181 * 109.52314 * 239.87234 * 2 1 3 23 23 C 1.53181 * 109.03738 * 183.11329 * 22 2 1 24 24 C 1.53084 * 109.16081 * 56.98360 * 23 22 2 25 25 O 1.42899 * 109.41746 * 302.39028 * 24 23 22 26 26 C 1.42910 * 114.15553 * 61.12464 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99710 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99900 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 0.96995 * 119.99856 * 0.02562 * 5 3 2 31 31 H 1.09004 * 110.36640 * 323.75631 * 8 6 5 32 32 H 1.08997 * 110.37038 * 86.08040 * 8 6 5 33 33 H 0.96998 * 119.99817 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.88249 * 239.52257 * 18 9 8 35 35 H 1.09004 * 109.88046 * 118.36623 * 18 9 8 36 36 H 0.96698 * 113.99388 * 293.52005 * 21 19 18 37 37 H 1.08998 * 109.54538 * 302.98591 * 22 2 1 38 38 H 1.09007 * 109.53729 * 63.24965 * 22 2 1 39 39 H 1.09003 * 109.52041 * 176.89037 * 23 22 2 40 40 H 1.08998 * 109.52315 * 297.07739 * 23 22 2 41 41 H 1.09005 * 109.48398 * 62.37737 * 24 23 22 42 42 H 1.09005 * 109.47913 * 182.39252 * 24 23 22 43 43 H 1.08995 * 109.53927 * 178.92487 * 26 25 24 44 44 H 1.09003 * 109.42147 * 58.88878 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7313 1.8164 -0.9096 5 7 1.7088 2.2505 1.0109 6 6 2.1979 3.6313 1.0106 7 1 2.3086 4.0043 -0.0076 8 6 3.5294 3.7490 1.7937 9 7 3.5830 5.1536 2.2382 10 6 4.7210 5.8506 2.5451 11 1 5.6853 5.3703 2.4699 12 6 4.6351 7.1748 2.9530 13 7 3.4598 7.7601 3.0452 14 14 6.1875 8.1254 3.3723 15 1 7.3706 7.2468 3.1893 16 1 6.3034 9.3040 2.4764 17 1 6.1225 8.5814 4.7841 18 6 2.2122 5.6819 2.2977 19 6 1.2654 4.5519 1.8416 20 1 0.8590 4.0159 2.6993 21 8 0.2125 5.0722 1.0276 22 6 2.0419 -0.7247 -1.2487 23 6 3.5716 -0.7865 -1.1986 24 6 4.0043 -1.4817 0.0948 25 8 3.4694 -0.7751 1.2158 26 6 2.0416 -0.7242 1.2480 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.1511 1.9336 1.7385 31 1 3.5242 3.0790 2.6536 32 1 4.3739 3.5248 1.1421 33 1 3.3999 8.6854 3.3298 34 1 2.1158 6.5383 1.6304 35 1 1.9726 5.9766 3.3194 36 1 -0.3987 5.6540 1.4999 37 1 1.6367 -1.7362 -1.2751 38 1 1.7279 -0.1812 -2.1400 39 1 3.9417 -1.3490 -2.0559 40 1 3.9780 0.2246 -1.2223 41 1 3.6316 -2.5060 0.0993 42 1 5.0926 -1.4907 0.1561 43 1 1.7159 -0.1874 2.1389 44 1 1.6432 -1.7386 1.2686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077905246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:01 Heat of formation + Delta-G solvation = -107.770036 kcal Electronic energy + Delta-G solvation = -25930.948052 eV Core-core repulsion = 22269.925391 eV Total energy + Delta-G solvation = -3661.022661 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78779 -38.65872 -37.51974 -35.05788 -34.54663 -34.13794 -32.29691 -31.40462 -28.34861 -27.17951 -26.99392 -25.23327 -24.55955 -23.18751 -21.70529 -20.49926 -20.21035 -19.35465 -17.24113 -16.96878 -16.62777 -16.25701 -15.79718 -15.56788 -15.15307 -14.75030 -14.43724 -14.14714 -14.08389 -13.92328 -13.19136 -12.83690 -12.75147 -12.65822 -12.39352 -12.36361 -12.20727 -12.06930 -11.98407 -11.50291 -11.22406 -11.08792 -10.85880 -10.81046 -10.74708 -10.57536 -10.09880 -9.87362 -9.81494 -9.73849 -9.46138 -9.15213 -8.75388 -8.58114 -6.87817 -5.73654 -3.07665 2.84655 3.31659 3.41002 3.46810 3.49367 3.79222 4.34576 4.45420 4.52396 4.63611 4.65370 4.85944 4.96178 5.05721 5.20564 5.23310 5.28992 5.40186 5.40416 5.46776 5.49822 5.60129 5.63118 5.70134 5.72016 5.80884 5.85920 5.93609 6.04501 6.13116 6.17755 6.39091 6.62324 6.68999 6.95592 7.05332 7.35124 7.49639 7.73451 7.79104 8.13172 8.20347 8.49487 9.18260 9.78337 10.41672 11.38307 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.004161 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.310078 B = 6727.992802 C = 7545.955755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.534 3.466 4 O -0.534 6.534 5 N -0.712 5.712 6 C 0.140 3.860 7 H 0.104 0.896 8 C 0.132 3.868 9 N -0.600 5.600 10 C -0.226 4.226 11 H 0.081 0.919 12 C -0.008 4.008 13 N -0.925 5.925 14 Si 0.914 3.086 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.290 1.290 18 C 0.154 3.846 19 C 0.068 3.932 20 H 0.056 0.944 21 O -0.563 6.563 22 C -0.094 4.094 23 C -0.168 4.168 24 C 0.060 3.940 25 O -0.374 6.374 26 C 0.074 3.926 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.394 0.606 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.252 0.748 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.375 0.625 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -18.752 -3.958 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C 0.319 3.681 4 O -0.410 6.410 5 N -0.361 5.361 6 C 0.034 3.966 7 H 0.122 0.878 8 C 0.005 3.995 9 N -0.328 5.328 10 C -0.354 4.354 11 H 0.099 0.901 12 C -0.204 4.204 13 N -0.573 5.573 14 Si 0.745 3.255 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.217 1.217 18 C 0.028 3.972 19 C 0.008 3.992 20 H 0.074 0.926 21 O -0.368 6.368 22 C -0.131 4.131 23 C -0.205 4.205 24 C -0.017 4.017 25 O -0.292 6.292 26 C -0.003 4.003 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.222 0.778 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.433 -18.510 -4.867 20.532 hybrid contribution -0.019 0.657 0.876 1.095 sum -7.452 -17.853 -3.991 19.753 Atomic orbital electron populations 1.21775 0.91866 1.02795 1.03181 1.21539 0.97638 0.93993 0.99053 1.20076 0.79791 0.86487 0.81730 1.90637 1.37506 1.76748 1.36135 1.45859 1.53171 1.12345 1.24764 1.22234 0.93789 0.79076 1.01480 0.87840 1.21831 0.94458 0.87907 0.95350 1.44259 1.02680 1.06893 1.78988 1.19151 0.85035 0.93275 1.37940 0.90096 1.24806 0.97143 0.96787 1.01687 1.69934 1.21486 1.12249 1.53583 0.85999 0.82053 0.79858 0.77611 1.20412 1.21695 1.21736 1.21806 0.82620 0.92349 1.00380 1.23474 0.88135 0.95971 0.91628 0.92616 1.86469 1.41775 1.68091 1.40485 1.21409 0.95995 0.99275 0.96470 1.22396 0.96166 1.04319 0.97664 1.22629 0.99189 0.93973 0.85871 1.88013 1.19349 1.76513 1.45344 1.22610 0.82032 0.99463 0.96197 0.91490 0.91754 0.91394 0.77250 0.95758 0.93258 0.93759 0.92145 0.93387 0.77773 0.91574 0.90676 0.91165 0.88271 0.93567 0.88896 0.88606 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.38 37.16 0.31 -0.85 16 2 C -0.12 -1.31 0.63 -155.52 -0.10 -1.41 16 3 C 0.53 8.28 5.91 -10.98 -0.06 8.22 16 4 O -0.53 -10.37 13.48 5.56 0.07 -10.29 16 5 N -0.71 -10.87 4.97 -51.73 -0.26 -11.13 16 6 C 0.14 2.70 3.15 -65.78 -0.21 2.49 16 7 H 0.10 2.32 7.54 -51.93 -0.39 1.93 16 8 C 0.13 2.92 6.93 -2.53 -0.02 2.90 16 9 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16 10 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 11 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 12 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 13 N -0.92 -27.08 10.31 55.49 0.57 -26.50 16 14 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 C 0.15 3.71 5.15 -3.07 -0.02 3.69 16 19 C 0.07 1.27 3.98 -24.90 -0.10 1.17 16 20 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 21 O -0.56 -9.84 13.39 -35.23 -0.47 -10.31 16 22 C -0.09 -1.00 4.45 -26.54 -0.12 -1.12 16 23 C -0.17 -1.95 5.81 -26.59 -0.15 -2.11 16 24 C 0.06 0.65 6.84 37.20 0.25 0.90 16 25 O -0.37 -4.92 10.45 -35.23 -0.37 -5.28 16 26 C 0.07 0.76 5.47 37.20 0.20 0.96 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.49 7.57 -51.93 -0.39 0.09 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.39 4.83 7.39 -40.82 -0.30 4.53 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 35 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 36 H 0.38 4.97 9.12 45.56 0.42 5.38 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.53 5.82 -51.93 -0.30 1.22 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 0.89 7.51 -51.93 -0.39 0.50 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -34.21 344.53 -7.43 -41.64 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.31 Total: 7.64 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.26 Total: 7.94 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.26 Total: -53.88 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.76 Total: -25.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.21 -7.43 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077905246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.129 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds