Wall clock time and date at job start Tue Mar 31 2020 04:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.52580 * 2 1 4 4 O 1.21282 * 120.00474 * 240.00143 * 3 2 1 5 5 N 1.34783 * 119.99687 * 59.99957 * 3 2 1 6 6 C 1.46493 * 119.99710 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.89195 * 31.12418 * 6 5 3 8 8 C 1.54912 * 111.00575 * 267.19593 * 6 5 3 9 9 N 1.47427 * 104.83354 * 204.92221 * 8 6 5 10 10 C 1.36936 * 125.64509 * 204.11090 * 9 8 6 11 11 H 1.07994 * 120.00259 * 359.97438 * 10 9 8 12 12 C 1.38818 * 119.99615 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00161 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99593 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47285 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46979 * 120.00363 * 14 12 10 17 17 H 1.48498 * 109.46777 * 239.99758 * 14 12 10 18 18 C 1.47020 * 108.70164 * 24.12342 * 9 8 6 19 19 C 1.54313 * 107.27608 * 358.94461 * 18 9 8 20 20 H 1.09004 * 110.87354 * 96.23684 * 19 18 9 21 21 O 1.42899 * 110.72445 * 219.44344 * 19 18 9 22 22 C 1.53181 * 109.52314 * 239.87234 * 2 1 3 23 23 C 1.53181 * 109.03738 * 183.11329 * 22 2 1 24 24 C 1.53084 * 109.16081 * 56.98360 * 23 22 2 25 25 O 1.42899 * 109.41746 * 302.39028 * 24 23 22 26 26 C 1.42910 * 114.15553 * 61.12464 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99710 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99900 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 0.96995 * 119.99856 * 0.02562 * 5 3 2 31 31 H 1.09004 * 110.36640 * 323.75631 * 8 6 5 32 32 H 1.08997 * 110.37038 * 86.08040 * 8 6 5 33 33 H 0.96998 * 119.99817 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.88249 * 239.52257 * 18 9 8 35 35 H 1.09004 * 109.88046 * 118.36623 * 18 9 8 36 36 H 0.96698 * 113.99388 * 293.52005 * 21 19 18 37 37 H 1.08998 * 109.54538 * 302.98591 * 22 2 1 38 38 H 1.09007 * 109.53729 * 63.24965 * 22 2 1 39 39 H 1.09003 * 109.52041 * 176.89037 * 23 22 2 40 40 H 1.08998 * 109.52315 * 297.07739 * 23 22 2 41 41 H 1.09005 * 109.48398 * 62.37737 * 24 23 22 42 42 H 1.09005 * 109.47913 * 182.39252 * 24 23 22 43 43 H 1.08995 * 109.53927 * 178.92487 * 26 25 24 44 44 H 1.09003 * 109.42147 * 58.88878 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7313 1.8164 -0.9096 5 7 1.7088 2.2505 1.0109 6 6 2.1979 3.6313 1.0106 7 1 2.3086 4.0043 -0.0076 8 6 3.5294 3.7490 1.7937 9 7 3.5830 5.1536 2.2382 10 6 4.7210 5.8506 2.5451 11 1 5.6853 5.3703 2.4699 12 6 4.6351 7.1748 2.9530 13 7 3.4598 7.7601 3.0452 14 14 6.1875 8.1254 3.3723 15 1 7.3706 7.2468 3.1893 16 1 6.3034 9.3040 2.4764 17 1 6.1225 8.5814 4.7841 18 6 2.2122 5.6819 2.2977 19 6 1.2654 4.5519 1.8416 20 1 0.8590 4.0159 2.6993 21 8 0.2125 5.0722 1.0276 22 6 2.0419 -0.7247 -1.2487 23 6 3.5716 -0.7865 -1.1986 24 6 4.0043 -1.4817 0.0948 25 8 3.4694 -0.7751 1.2158 26 6 2.0416 -0.7242 1.2480 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.1511 1.9336 1.7385 31 1 3.5242 3.0790 2.6536 32 1 4.3739 3.5248 1.1421 33 1 3.3999 8.6854 3.3298 34 1 2.1158 6.5383 1.6304 35 1 1.9726 5.9766 3.3194 36 1 -0.3987 5.6540 1.4999 37 1 1.6367 -1.7362 -1.2751 38 1 1.7279 -0.1812 -2.1400 39 1 3.9417 -1.3490 -2.0559 40 1 3.9780 0.2246 -1.2223 41 1 3.6316 -2.5060 0.0993 42 1 5.0926 -1.4907 0.1561 43 1 1.7159 -0.1874 2.1389 44 1 1.6432 -1.7386 1.2686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077905246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:00 Heat of formation + Delta-G solvation = -135.826631 kcal Electronic energy + Delta-G solvation = -25932.164677 eV Core-core repulsion = 22269.925391 eV Total energy + Delta-G solvation = -3662.239286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86037 -40.06289 -38.84690 -36.69828 -35.69572 -35.43684 -33.77297 -32.80971 -30.17610 -28.78689 -27.85525 -26.50685 -25.98907 -24.33497 -22.75017 -22.29838 -21.79833 -20.53702 -19.06837 -18.35455 -17.91892 -17.43716 -17.02158 -16.70560 -16.46101 -16.14786 -15.81342 -15.55993 -15.35486 -15.10580 -14.68260 -14.48595 -14.24904 -13.79442 -13.57882 -13.53607 -13.20981 -13.17124 -13.13932 -12.96287 -12.86844 -12.77745 -12.72485 -12.07331 -11.96193 -11.90551 -11.60403 -11.49004 -11.44689 -11.04677 -10.79625 -10.66471 -10.31494 -10.09674 -8.98839 -7.90722 -5.28008 1.44225 1.45792 1.56255 1.65929 2.06969 2.46454 2.99708 3.11260 3.30052 3.49451 3.53824 3.63492 3.80382 3.89380 3.99823 4.03449 4.12944 4.18758 4.28586 4.42384 4.49981 4.54806 4.57128 4.70562 4.72790 4.76648 4.80032 4.89670 4.93224 5.00898 5.05641 5.21952 5.27317 5.34679 5.41306 5.43469 5.54583 5.63976 6.11580 6.26651 6.57092 6.85644 7.03165 7.29928 7.67047 8.29807 9.19223 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.004161 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.310078 B = 6727.992802 C = 7545.955755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.525 3.475 4 O -0.580 6.580 5 N -0.700 5.700 6 C 0.155 3.845 7 H 0.067 0.933 8 C 0.135 3.865 9 N -0.622 5.622 10 C -0.249 4.249 11 H 0.079 0.921 12 C -0.059 4.059 13 N -0.948 5.948 14 Si 0.981 3.019 15 H -0.269 1.269 16 H -0.291 1.291 17 H -0.285 1.285 18 C 0.162 3.838 19 C 0.092 3.908 20 H 0.095 0.905 21 O -0.568 6.568 22 C -0.094 4.094 23 C -0.169 4.169 24 C 0.059 3.941 25 O -0.406 6.406 26 C 0.069 3.931 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.413 0.587 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.250 0.750 34 H 0.020 0.980 35 H 0.027 0.973 36 H 0.396 0.604 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -21.382 -3.097 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C 0.313 3.687 4 O -0.459 6.459 5 N -0.351 5.351 6 C 0.048 3.952 7 H 0.085 0.915 8 C 0.008 3.992 9 N -0.350 5.350 10 C -0.378 4.378 11 H 0.096 0.904 12 C -0.253 4.253 13 N -0.596 5.596 14 Si 0.809 3.191 15 H -0.194 1.194 16 H -0.218 1.218 17 H -0.212 1.212 18 C 0.036 3.964 19 C 0.032 3.968 20 H 0.113 0.887 21 O -0.376 6.376 22 C -0.132 4.132 23 C -0.206 4.206 24 C -0.017 4.017 25 O -0.325 6.325 26 C -0.008 4.008 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.250 0.750 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.246 0.754 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.954 -21.178 -3.990 23.336 hybrid contribution 0.458 1.473 0.550 1.638 sum -8.495 -19.704 -3.439 21.731 Atomic orbital electron populations 1.21816 0.89296 1.04983 1.03199 1.21596 0.99478 0.90242 1.00016 1.21119 0.78719 0.88287 0.80605 1.90634 1.39457 1.77967 1.37890 1.45662 1.53224 1.10532 1.25723 1.21662 0.92869 0.81689 0.98969 0.91465 1.21872 0.95410 0.86348 0.95556 1.44526 1.02983 1.08388 1.79056 1.19472 0.85999 0.94084 1.38242 0.90356 1.25642 1.00267 0.97576 1.01776 1.70132 1.23252 1.12210 1.54015 0.84980 0.78769 0.78170 0.77207 1.19364 1.21807 1.21159 1.21626 0.83172 0.93304 0.98318 1.23148 0.87393 0.93792 0.92467 0.88694 1.86435 1.41525 1.68645 1.41000 1.21474 0.95169 1.00965 0.95598 1.22345 0.97138 1.01986 0.99177 1.22726 0.99271 0.95133 0.84618 1.87969 1.21236 1.77210 1.46131 1.22873 0.80719 1.01448 0.95710 0.92704 0.90596 0.88121 0.74995 0.94232 0.95565 0.94085 0.96171 0.95452 0.75375 0.87824 0.92439 0.89547 0.92951 0.90327 0.89274 0.87674 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.38 71.98 0.60 -1.16 16 2 C -0.11 -2.15 0.63 -52.84 -0.03 -2.18 16 3 C 0.52 16.09 5.91 87.66 0.52 16.61 16 4 O -0.58 -23.54 13.48 -3.03 -0.04 -23.58 16 5 N -0.70 -20.63 4.97 -435.95 -2.17 -22.80 16 6 C 0.16 6.07 3.15 46.39 0.15 6.22 16 7 H 0.07 3.16 7.54 -2.39 -0.02 3.14 16 8 C 0.13 6.13 6.93 86.86 0.60 6.73 16 9 N -0.62 -33.49 3.39 -691.99 -2.35 -35.84 16 10 C -0.25 -14.60 10.28 84.04 0.86 -13.74 16 11 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 12 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 13 N -0.95 -56.96 10.31 21.65 0.22 -56.74 16 14 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 C 0.16 7.98 5.15 86.73 0.45 8.43 16 19 C 0.09 3.38 3.98 31.78 0.13 3.50 16 20 H 0.10 2.81 8.00 -2.39 -0.02 2.79 16 21 O -0.57 -19.18 13.39 -148.98 -1.99 -21.17 16 22 C -0.09 -1.81 4.45 30.72 0.14 -1.68 16 23 C -0.17 -3.81 5.81 30.68 0.18 -3.63 16 24 C 0.06 1.16 6.84 72.01 0.49 1.65 16 25 O -0.41 -9.91 10.45 -148.98 -1.56 -11.46 16 26 C 0.07 1.16 5.47 72.01 0.39 1.56 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.82 7.57 -2.39 -0.02 0.80 16 29 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.41 8.96 7.39 -92.71 -0.68 8.28 16 31 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.02 1.14 7.29 -2.39 -0.02 1.12 16 35 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 36 H 0.40 9.80 9.12 -74.06 -0.68 9.12 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.30 8.02 -2.38 -0.02 1.28 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.69 5.82 -2.39 -0.01 1.68 16 41 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.11 1.54 7.51 -2.39 -0.02 1.52 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.19 344.53 -1.27 -80.46 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.35 Total: 23.05 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 4.94 Total: 19.34 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -4.29 Total: -115.38 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -3.59 Total: -56.22 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -79.19 -1.27 -80.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077905246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.368 kcal (2) G-P(sol) polarization free energy of solvation -79.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds