Wall clock time and date at job start Tue Mar 31 2020 04:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99795 * 2 1 4 4 H 1.48502 * 109.47278 * 264.53602 * 3 2 1 5 5 H 1.48495 * 109.47211 * 24.53822 * 3 2 1 6 6 H 1.48503 * 109.47050 * 144.53797 * 3 2 1 7 7 C 1.38804 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00205 * 337.62005 * 7 2 1 9 9 N 1.36938 * 119.99868 * 157.61568 * 7 2 1 10 10 C 1.47028 * 125.64886 * 161.51158 * 9 7 2 11 11 C 1.54325 * 107.27106 * 178.90658 * 10 9 7 12 12 H 1.09009 * 110.71288 * 96.35025 * 11 10 9 13 13 N 1.46494 * 110.71770 * 219.44415 * 11 10 9 14 14 C 1.34777 * 120.00606 * 273.54586 * 13 11 10 15 15 O 1.21281 * 119.99509 * 0.02562 * 14 13 11 16 16 C 1.50696 * 120.00762 * 180.02562 * 14 13 11 17 17 C 1.52994 * 109.47242 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.48170 * 55.02225 * 17 16 14 19 19 C 1.53096 * 109.48006 * 175.05750 * 17 16 14 20 20 C 1.53174 * 109.16603 * 177.59386 * 19 17 16 21 21 C 1.53176 * 109.04040 * 303.02230 * 20 19 17 22 22 C 1.53089 * 109.16619 * 56.96539 * 21 20 19 23 23 O 1.42900 * 109.48310 * 294.99727 * 17 16 14 24 24 C 1.55156 * 102.94426 * 337.81123 * 11 10 9 25 25 H 1.08995 * 111.00502 * 153.56995 * 24 11 10 26 26 O 1.42898 * 111.00153 * 277.42576 * 24 11 10 27 27 C 1.47418 * 125.64899 * 341.47680 * 9 7 2 28 28 H 0.96999 * 120.00124 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.87640 * 59.49370 * 10 9 7 30 30 H 1.09002 * 110.00973 * 298.40036 * 10 9 7 31 31 H 0.97002 * 119.99996 * 93.55152 * 13 11 10 32 32 H 1.09005 * 109.47111 * 59.99455 * 16 14 13 33 33 H 1.09007 * 109.46901 * 300.00509 * 16 14 13 34 34 H 1.09010 * 109.52163 * 297.49865 * 19 17 16 35 35 H 1.09001 * 109.52181 * 57.68167 * 19 17 16 36 36 H 1.08998 * 109.54576 * 62.88466 * 20 19 17 37 37 H 1.09001 * 109.54333 * 183.06573 * 20 19 17 38 38 H 1.08995 * 109.51792 * 297.06022 * 21 20 19 39 39 H 1.09003 * 109.53182 * 176.87430 * 21 20 19 40 40 H 1.08998 * 109.48352 * 182.41581 * 22 21 20 41 41 H 1.09000 * 109.48229 * 62.39126 * 22 21 20 42 42 H 0.96699 * 113.99834 * 179.97438 * 26 24 11 43 43 H 1.08997 * 110.37065 * 323.00168 * 27 9 7 44 44 H 1.09006 * 110.37029 * 85.21631 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3947 2.6832 0.5814 6 1 3.4852 1.4763 0.8123 7 6 2.0102 -1.2021 -0.0005 8 1 1.5312 -2.1024 0.3552 9 7 3.3022 -1.2466 -0.4522 10 6 4.2726 -2.3143 -0.1692 11 6 5.5797 -1.9523 -0.9054 12 1 6.2743 -1.4488 -0.2328 13 7 6.1967 -3.1483 -1.4843 14 6 7.0272 -3.9055 -0.7403 15 8 7.2633 -3.5970 0.4086 16 6 7.6623 -5.1354 -1.3360 17 6 8.5520 -5.8080 -0.2887 18 1 7.9671 -6.0124 0.6081 19 6 9.0995 -7.1221 -0.8519 20 6 10.0364 -7.7594 0.1788 21 6 11.1502 -6.7658 0.5233 22 6 10.5236 -5.4654 1.0331 23 8 9.6403 -4.9419 0.0393 24 6 5.0949 -0.9897 -2.0215 25 1 5.8893 -0.3056 -2.3196 26 8 4.5999 -1.7182 -3.1468 27 6 3.9502 -0.2322 -1.3032 28 1 -0.4850 0.8400 0.0004 29 1 3.8922 -3.2676 -0.5362 30 1 4.4562 -2.3767 0.9034 31 1 6.0076 -3.3952 -2.4031 32 1 8.2661 -4.8514 -2.1979 33 1 6.8836 -5.8302 -1.6510 34 1 8.2728 -7.8011 -1.0615 35 1 9.6505 -6.9230 -1.7711 36 1 9.4746 -8.0041 1.0802 37 1 10.4722 -8.6678 -0.2371 38 1 11.7428 -6.5597 -0.3680 39 1 11.7901 -7.1897 1.2972 40 1 11.3100 -4.7394 1.2393 41 1 9.9646 -5.6652 1.9473 42 1 4.2851 -1.1587 -3.8699 43 1 3.2409 0.1617 -2.0310 44 1 4.3529 0.5752 -0.6915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083399455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:05 Heat of formation + Delta-G solvation = -108.836170 kcal Electronic energy + Delta-G solvation = -24999.071089 eV Core-core repulsion = 21338.002197 eV Total energy + Delta-G solvation = -3661.068892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10409 -39.18600 -37.95691 -35.00280 -33.98754 -33.75961 -32.99989 -31.85123 -29.36533 -28.32262 -27.41618 -24.74342 -24.14563 -22.78750 -21.14921 -20.50405 -20.39790 -19.76127 -17.58755 -16.94673 -16.67929 -16.59933 -16.12653 -15.56660 -15.35255 -14.91174 -14.76820 -14.48813 -14.25320 -13.80677 -13.62980 -13.15593 -13.02050 -12.84414 -12.81137 -12.53789 -12.33125 -12.09146 -11.47034 -11.39089 -11.34441 -11.31449 -11.06788 -10.99501 -10.94819 -10.51276 -10.48228 -10.24287 -9.68320 -9.58368 -9.49063 -9.41199 -8.80388 -8.59591 -7.03325 -5.93950 -3.23665 2.88048 3.29700 3.30716 3.47119 3.49393 3.65852 4.32134 4.47672 4.53241 4.55449 4.59107 4.70456 4.88690 4.92697 5.01659 5.04598 5.15106 5.22174 5.27466 5.32939 5.43352 5.45149 5.48169 5.52594 5.55504 5.64465 5.67705 5.77625 5.82602 5.86648 5.98819 6.03986 6.34667 6.41864 6.50274 6.70663 6.90033 7.17416 7.67671 7.80770 7.87970 8.31710 8.50360 8.83706 9.68640 10.16160 11.22359 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.003103 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.484552 B = 9022.501512 C = 9130.059198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.882 3.118 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.092 0.908 9 N -0.601 5.601 10 C 0.131 3.869 11 C 0.143 3.857 12 H 0.102 0.898 13 N -0.713 5.713 14 C 0.511 3.489 15 O -0.532 6.532 16 C -0.134 4.134 17 C 0.107 3.893 18 H 0.067 0.933 19 C -0.151 4.151 20 C -0.122 4.122 21 C -0.157 4.157 22 C 0.063 3.937 23 O -0.366 6.366 24 C 0.084 3.916 25 H 0.067 0.933 26 O -0.554 6.554 27 C 0.084 3.916 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.407 0.593 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.380 0.620 43 H 0.066 0.934 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.183 -12.396 -5.817 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.712 3.288 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.202 1.202 7 C -0.363 4.363 8 H 0.110 0.890 9 N -0.328 5.328 10 C 0.005 3.995 11 C 0.038 3.962 12 H 0.120 0.880 13 N -0.365 5.365 14 C 0.297 3.703 15 O -0.408 6.408 16 C -0.174 4.174 17 C 0.048 3.952 18 H 0.085 0.915 19 C -0.189 4.189 20 C -0.160 4.160 21 C -0.195 4.195 22 C -0.014 4.014 23 O -0.285 6.285 24 C 0.023 3.977 25 H 0.084 0.916 26 O -0.360 6.360 27 C -0.042 4.042 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.242 0.758 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.228 0.772 43 H 0.084 0.916 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 21.290 -12.419 -4.640 25.080 hybrid contribution 0.082 1.167 -0.588 1.309 sum 21.373 -11.252 -5.228 24.713 Atomic orbital electron populations 1.69844 1.05496 1.26524 1.53420 1.24992 0.95185 0.97301 1.00354 0.86997 0.79357 0.84854 0.77577 1.21425 1.22921 1.20160 1.18650 0.84174 0.95494 1.38015 0.88999 1.44583 1.09899 1.21887 1.56405 1.21676 0.87595 0.92980 0.97284 1.22076 0.94935 0.85228 0.93986 0.87991 1.45805 1.46980 1.27055 1.16698 1.20484 0.78639 0.84668 0.86486 1.90716 1.61207 1.71306 1.17533 1.21722 0.99536 0.96393 0.99776 1.21756 0.87765 0.88698 0.96961 0.91532 1.22242 1.00035 0.97184 0.99465 1.21571 0.96897 0.98211 0.99293 1.22217 0.98436 0.96766 1.02069 1.22499 0.92948 0.95013 0.90936 1.87978 1.38273 1.43321 1.58938 1.23202 0.95144 0.92887 0.86424 0.91562 1.86307 1.84291 1.37366 1.28013 1.22648 0.94284 0.92973 0.94330 0.92721 0.94361 0.94502 0.75757 0.88237 0.87528 0.90713 0.90973 0.91732 0.91537 0.91200 0.91090 0.89132 0.93185 0.77216 0.91562 0.94854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.97 55.49 0.78 -27.52 16 2 C 0.02 0.59 5.43 -17.43 -0.09 0.49 16 3 Si 0.88 22.58 24.27 -169.99 -4.13 18.45 16 4 H -0.29 -6.90 6.49 56.52 0.37 -6.54 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.28 -7.01 6.66 56.52 0.38 -6.64 16 7 C -0.24 -6.86 10.57 -15.06 -0.16 -7.02 16 8 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 9 N -0.60 -14.91 3.21 -170.07 -0.55 -15.46 16 10 C 0.13 2.83 6.99 -3.06 -0.02 2.81 16 11 C 0.14 2.52 3.12 -66.10 -0.21 2.31 16 12 H 0.10 1.85 7.70 -51.92 -0.40 1.46 16 13 N -0.71 -10.40 5.08 -52.03 -0.26 -10.67 16 14 C 0.51 7.59 7.71 -10.99 -0.08 7.51 16 15 O -0.53 -10.04 15.15 -8.87 -0.13 -10.18 16 16 C -0.13 -1.39 5.41 -27.89 -0.15 -1.54 16 17 C 0.11 1.17 2.19 -26.68 -0.06 1.11 16 18 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 19 C -0.15 -1.20 5.42 -26.59 -0.14 -1.35 16 20 C -0.12 -0.90 6.03 -26.55 -0.16 -1.06 16 21 C -0.16 -1.20 6.14 -26.59 -0.16 -1.36 16 22 C 0.06 0.63 6.84 37.20 0.25 0.88 16 23 O -0.37 -4.72 9.64 -49.65 -0.48 -5.20 16 24 C 0.08 1.38 4.28 -24.58 -0.11 1.27 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 O -0.55 -8.25 12.23 -35.23 -0.43 -8.68 16 27 C 0.08 1.78 4.43 -2.53 -0.01 1.77 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.41 5.13 7.57 -40.82 -0.31 4.83 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.38 4.23 9.12 45.56 0.42 4.64 16 43 H 0.07 1.47 6.63 -51.93 -0.34 1.12 16 44 H 0.03 0.74 5.57 -51.93 -0.29 0.45 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.49 344.99 -7.56 -43.05 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.45 Total: 5.19 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.10 Total: 5.82 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.03 Total: -53.65 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.04 Total: -24.06 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.13 Total: 18.45 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.49 -7.56 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083399455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.789 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds