Wall clock time and date at job start Tue Mar 31 2020 04:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99502 * 2 1 4 4 H 1.48502 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47313 * 300.00030 * 3 2 1 6 6 H 1.48498 * 109.47551 * 60.00256 * 3 2 1 7 7 C 1.38811 * 120.00768 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.65003 * 180.02562 * 9 7 2 11 11 C 1.54319 * 107.27408 * 178.98104 * 10 9 7 12 12 H 1.08993 * 110.72384 * 96.34881 * 11 10 9 13 13 N 1.46500 * 110.71531 * 219.44396 * 11 10 9 14 14 C 1.34781 * 120.00076 * 271.15315 * 13 11 10 15 15 O 1.21279 * 119.99592 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99952 * 180.02562 * 14 13 11 17 17 H 1.08996 * 109.60581 * 300.20685 * 16 14 13 18 18 C 1.54210 * 109.53590 * 179.97438 * 16 14 13 19 19 C 1.46286 * 111.98612 * 162.59167 * 18 16 14 20 20 C 1.54118 * 112.19554 * 61.41908 * 19 18 16 21 21 O 1.40315 * 108.71122 * 280.44067 * 20 19 18 22 22 C 1.43988 * 116.58036 * 95.04025 * 21 20 19 23 23 C 1.50623 * 109.54067 * 60.41765 * 16 14 13 24 24 C 1.55157 * 103.10041 * 337.88886 * 11 10 9 25 25 H 1.09005 * 111.00084 * 153.48620 * 24 11 10 26 26 O 1.42896 * 111.01219 * 277.34319 * 24 11 10 27 27 C 1.47426 * 125.65071 * 0.04714 * 9 7 2 28 28 H 0.96992 * 120.00667 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.87897 * 59.55532 * 10 9 7 30 30 H 1.09008 * 110.00652 * 298.46633 * 10 9 7 31 31 H 0.97000 * 120.00181 * 91.16120 * 13 11 10 32 32 H 1.09001 * 108.97494 * 41.94584 * 18 16 14 33 33 H 1.08994 * 108.97404 * 283.24468 * 18 16 14 34 34 H 1.09006 * 108.93240 * 182.11437 * 19 18 16 35 35 H 1.08995 * 108.93715 * 300.71986 * 19 18 16 36 36 H 1.08997 * 109.59888 * 40.21437 * 20 19 18 37 37 H 1.09001 * 109.59308 * 160.52120 * 20 19 18 38 38 H 1.09000 * 108.69762 * 78.91264 * 22 21 20 39 39 H 1.09002 * 108.69810 * 197.01138 * 22 21 20 40 40 H 1.08993 * 108.88552 * 89.43116 * 23 16 14 41 41 H 1.09002 * 108.80217 * 330.91701 * 23 16 14 42 42 H 0.96699 * 114.00367 * 179.97438 * 26 24 11 43 43 H 1.09003 * 110.36472 * 322.92647 * 27 9 7 44 44 H 1.09000 * 110.36887 * 85.24840 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 1.9320 -3.7274 -0.0005 11 6 0.7787 -4.7524 0.0257 12 1 0.5489 -5.1003 -0.9814 13 7 1.1084 -5.8812 0.8993 14 6 1.7587 -6.9515 0.4011 15 8 2.0713 -6.9798 -0.7704 16 6 2.0974 -8.1129 1.2997 17 1 2.7358 -7.7711 2.1143 18 6 2.8338 -9.1966 0.4864 19 6 3.5401 -10.1435 1.3492 20 6 2.5813 -10.9062 2.2842 21 8 2.2568 -10.0778 3.3692 22 6 1.0390 -9.3176 3.2578 23 6 0.8301 -8.6990 1.8647 24 6 -0.4049 -3.9353 0.6078 25 1 -1.3603 -4.3374 0.2708 26 8 -0.3445 -3.8915 2.0348 27 6 -0.1413 -2.5332 -0.0010 28 1 -0.4851 0.8399 0.0004 29 1 2.5580 -3.8509 0.8832 30 1 2.5306 -3.8659 -0.9010 31 1 0.8586 -5.8585 1.8363 32 1 3.5537 -8.7150 -0.1754 33 1 2.1080 -9.7407 -0.1178 34 1 4.0717 -10.8620 0.7252 35 1 4.2648 -9.5984 1.9540 36 1 1.6737 -11.1697 1.7411 37 1 3.0672 -11.8125 2.6457 38 1 0.1966 -9.9729 3.4788 39 1 1.0593 -8.5152 3.9953 40 1 0.4652 -9.4705 1.1868 41 1 0.0806 -7.9109 1.9377 42 1 -1.0639 -3.3912 2.4438 43 1 -0.5993 -1.7591 0.6148 44 1 -0.5269 -2.4865 -1.0195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083434726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:09 Heat of formation + Delta-G solvation = -106.805694 kcal Electronic energy + Delta-G solvation = -25354.129203 eV Core-core repulsion = 21693.148359 eV Total energy + Delta-G solvation = -3660.980844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.42660 -38.98556 -37.78670 -34.87906 -34.70572 -34.06856 -32.82755 -31.55102 -28.65027 -27.59448 -26.88345 -25.92637 -24.41222 -21.93657 -21.08844 -20.59609 -20.00002 -19.63563 -17.61669 -17.11548 -17.01910 -16.66870 -15.91720 -15.47129 -15.21642 -14.78800 -14.74007 -14.19536 -14.04537 -13.85389 -13.58014 -13.26592 -13.00459 -12.90450 -12.60014 -12.28663 -11.85186 -11.72281 -11.42873 -11.33011 -11.08077 -10.94331 -10.86967 -10.84623 -10.69577 -10.60558 -10.35644 -10.03500 -9.85351 -9.81428 -9.46730 -9.22021 -8.71643 -8.66303 -6.85613 -5.70332 -3.10046 2.81625 3.31740 3.38858 3.44768 3.47247 3.61120 4.37612 4.45698 4.51528 4.59302 4.65881 4.73482 4.84571 5.02557 5.17409 5.24560 5.27864 5.33200 5.36614 5.44968 5.49800 5.50141 5.70035 5.71681 5.77890 5.83133 5.90034 5.92004 6.04849 6.11639 6.18266 6.27217 6.56258 6.70133 6.95299 7.12384 7.24596 7.55932 7.70897 7.83222 8.10202 8.30235 8.48017 9.17512 9.78442 10.41744 11.34934 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.003281 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.511363 B = 8532.494268 C = 8824.880067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.132 3.868 11 C 0.142 3.858 12 H 0.099 0.901 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.544 6.544 16 C -0.103 4.103 17 H 0.103 0.897 18 C -0.102 4.102 19 C -0.150 4.150 20 C 0.065 3.935 21 O -0.384 6.384 22 C 0.065 3.935 23 C -0.149 4.149 24 C 0.067 3.933 25 H 0.058 0.942 26 O -0.561 6.561 27 C 0.127 3.873 28 H 0.251 0.749 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.407 0.593 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.379 0.621 43 H 0.115 0.885 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -19.993 6.061 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.005 3.995 11 C 0.037 3.963 12 H 0.117 0.883 13 N -0.359 5.359 14 C 0.299 3.701 15 O -0.422 6.422 16 C -0.124 4.124 17 H 0.121 0.879 18 C -0.139 4.139 19 C -0.188 4.188 20 C -0.012 4.012 21 O -0.303 6.303 22 C -0.011 4.011 23 C -0.187 4.187 24 C 0.007 3.993 25 H 0.076 0.924 26 O -0.367 6.367 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.243 0.757 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.227 0.773 43 H 0.133 0.867 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.346 -20.121 5.254 20.799 hybrid contribution -0.370 1.294 0.111 1.350 sum -0.716 -18.828 5.365 19.590 Atomic orbital electron populations 1.69723 1.04906 1.24690 1.58328 1.24758 0.95775 0.97709 1.02550 0.85957 0.78705 0.83406 0.77207 1.20510 1.21762 1.21741 1.19154 0.90628 0.82281 1.42304 0.90348 1.44292 1.01424 0.99729 1.86827 1.21588 0.93893 0.85578 0.98488 1.22134 0.95175 0.85078 0.93935 0.88299 1.45862 1.58498 1.17373 1.14165 1.20579 0.77452 0.83514 0.88560 1.90684 1.53051 1.81047 1.17376 1.21047 0.98296 0.94423 0.98630 0.87862 1.20423 1.00297 0.95530 0.97696 1.21156 0.99516 0.99295 0.98811 1.22374 0.97795 0.92790 0.88239 1.87463 1.42379 1.58954 1.41527 1.22959 0.86608 0.95090 0.96465 1.21995 0.97547 1.01639 0.97522 1.23621 0.95565 0.98753 0.81409 0.92408 1.86233 1.54589 1.76889 1.19008 1.22629 0.85938 0.92395 0.98872 0.93786 0.95316 0.95488 0.75722 0.90343 0.91869 0.90991 0.90951 0.93014 0.89928 0.92852 0.89032 0.91019 0.89905 0.77340 0.86700 0.96064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.48 10.09 55.49 0.56 -25.92 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.46 3.40 -169.95 -0.58 -16.04 16 10 C 0.13 2.96 7.00 -3.06 -0.02 2.94 16 11 C 0.14 2.64 3.15 -66.10 -0.21 2.43 16 12 H 0.10 1.90 7.62 -51.93 -0.40 1.50 16 13 N -0.71 -10.89 4.70 -52.03 -0.24 -11.13 16 14 C 0.51 7.83 7.07 -10.98 -0.08 7.75 16 15 O -0.54 -10.32 15.33 5.56 0.09 -10.24 16 16 C -0.10 -1.16 2.23 -92.33 -0.21 -1.37 16 17 H 0.10 1.16 7.82 -51.93 -0.41 0.75 16 18 C -0.10 -1.10 4.30 -29.29 -0.13 -1.22 16 19 C -0.15 -1.32 5.47 -29.34 -0.16 -1.48 16 20 C 0.07 0.53 6.38 37.74 0.24 0.77 16 21 O -0.38 -3.80 10.17 -33.67 -0.34 -4.14 16 22 C 0.07 0.53 6.67 37.60 0.25 0.78 16 23 C -0.15 -1.34 4.81 -27.48 -0.13 -1.48 16 24 C 0.07 1.20 4.31 -24.47 -0.11 1.10 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 O -0.56 -9.33 12.23 -35.23 -0.43 -9.76 16 27 C 0.13 2.98 5.62 -2.42 -0.01 2.96 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 30 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.41 5.62 7.06 -40.82 -0.29 5.33 16 32 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 33 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.05 0.38 6.98 -51.93 -0.36 0.02 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.62 6.83 -51.93 -0.35 0.27 16 41 H 0.08 0.74 6.97 -51.93 -0.36 0.38 16 42 H 0.38 5.05 9.12 45.56 0.42 5.46 16 43 H 0.12 2.96 5.87 -51.93 -0.31 2.66 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -32.71 342.14 -7.81 -40.52 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.18 Total: 7.91 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.81 Total: 6.49 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.26 Total: -53.09 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.69 Total: -24.14 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.71 -7.81 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083434726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.284 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds