Wall clock time and date at job start Tue Mar 31 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99502 * 2 1 4 4 H 1.48502 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47313 * 300.00030 * 3 2 1 6 6 H 1.48498 * 109.47551 * 60.00256 * 3 2 1 7 7 C 1.38811 * 120.00768 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99483 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.65003 * 180.02562 * 9 7 2 11 11 C 1.54319 * 107.27408 * 178.98104 * 10 9 7 12 12 H 1.08993 * 110.72384 * 96.34881 * 11 10 9 13 13 N 1.46500 * 110.71531 * 219.44396 * 11 10 9 14 14 C 1.34781 * 120.00076 * 271.15315 * 13 11 10 15 15 O 1.21279 * 119.99592 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99952 * 180.02562 * 14 13 11 17 17 H 1.08996 * 109.60581 * 300.20685 * 16 14 13 18 18 C 1.54210 * 109.53590 * 179.97438 * 16 14 13 19 19 C 1.46286 * 111.98612 * 162.59167 * 18 16 14 20 20 C 1.54118 * 112.19554 * 61.41908 * 19 18 16 21 21 O 1.40315 * 108.71122 * 280.44067 * 20 19 18 22 22 C 1.43988 * 116.58036 * 95.04025 * 21 20 19 23 23 C 1.50623 * 109.54067 * 60.41765 * 16 14 13 24 24 C 1.55157 * 103.10041 * 337.88886 * 11 10 9 25 25 H 1.09005 * 111.00084 * 153.48620 * 24 11 10 26 26 O 1.42896 * 111.01219 * 277.34319 * 24 11 10 27 27 C 1.47426 * 125.65071 * 0.04714 * 9 7 2 28 28 H 0.96992 * 120.00667 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.87897 * 59.55532 * 10 9 7 30 30 H 1.09008 * 110.00652 * 298.46633 * 10 9 7 31 31 H 0.97000 * 120.00181 * 91.16120 * 13 11 10 32 32 H 1.09001 * 108.97494 * 41.94584 * 18 16 14 33 33 H 1.08994 * 108.97404 * 283.24468 * 18 16 14 34 34 H 1.09006 * 108.93240 * 182.11437 * 19 18 16 35 35 H 1.08995 * 108.93715 * 300.71986 * 19 18 16 36 36 H 1.08997 * 109.59888 * 40.21437 * 20 19 18 37 37 H 1.09001 * 109.59308 * 160.52120 * 20 19 18 38 38 H 1.09000 * 108.69762 * 78.91264 * 22 21 20 39 39 H 1.09002 * 108.69810 * 197.01138 * 22 21 20 40 40 H 1.08993 * 108.88552 * 89.43116 * 23 16 14 41 41 H 1.09002 * 108.80217 * 330.91701 * 23 16 14 42 42 H 0.96699 * 114.00367 * 179.97438 * 26 24 11 43 43 H 1.09003 * 110.36472 * 322.92647 * 27 9 7 44 44 H 1.09000 * 110.36887 * 85.24840 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 1.9320 -3.7274 -0.0005 11 6 0.7787 -4.7524 0.0257 12 1 0.5489 -5.1003 -0.9814 13 7 1.1084 -5.8812 0.8993 14 6 1.7587 -6.9515 0.4011 15 8 2.0713 -6.9798 -0.7704 16 6 2.0974 -8.1129 1.2997 17 1 2.7358 -7.7711 2.1143 18 6 2.8338 -9.1966 0.4864 19 6 3.5401 -10.1435 1.3492 20 6 2.5813 -10.9062 2.2842 21 8 2.2568 -10.0778 3.3692 22 6 1.0390 -9.3176 3.2578 23 6 0.8301 -8.6990 1.8647 24 6 -0.4049 -3.9353 0.6078 25 1 -1.3603 -4.3374 0.2708 26 8 -0.3445 -3.8915 2.0348 27 6 -0.1413 -2.5332 -0.0010 28 1 -0.4851 0.8399 0.0004 29 1 2.5580 -3.8509 0.8832 30 1 2.5306 -3.8659 -0.9010 31 1 0.8586 -5.8585 1.8363 32 1 3.5537 -8.7150 -0.1754 33 1 2.1080 -9.7407 -0.1178 34 1 4.0717 -10.8620 0.7252 35 1 4.2648 -9.5984 1.9540 36 1 1.6737 -11.1697 1.7411 37 1 3.0672 -11.8125 2.6457 38 1 0.1966 -9.9729 3.4788 39 1 1.0593 -8.5152 3.9953 40 1 0.4652 -9.4705 1.1868 41 1 0.0806 -7.9109 1.9377 42 1 -1.0639 -3.3912 2.4438 43 1 -0.5993 -1.7591 0.6148 44 1 -0.5269 -2.4865 -1.0195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083434726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:08 Heat of formation + Delta-G solvation = -132.106263 kcal Electronic energy + Delta-G solvation = -25355.226318 eV Core-core repulsion = 21693.148359 eV Total energy + Delta-G solvation = -3662.077959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53065 -40.10460 -39.16649 -36.38762 -35.71206 -35.51935 -33.89291 -33.18961 -30.38046 -28.96703 -28.03672 -26.90718 -26.16745 -23.08674 -22.27980 -21.81722 -21.44654 -20.86315 -19.25830 -18.32318 -18.26144 -17.76207 -16.98234 -16.90224 -16.51365 -16.13697 -15.97649 -15.65513 -15.30946 -14.95896 -14.70943 -14.54140 -14.43572 -14.21284 -13.91377 -13.57418 -13.24353 -13.12463 -12.91587 -12.77446 -12.57884 -12.25686 -12.14197 -12.11572 -11.92811 -11.88115 -11.70380 -11.64063 -11.34730 -10.97055 -10.81659 -10.72862 -10.31652 -10.08763 -8.92430 -7.82745 -5.26254 1.45453 1.45998 1.56377 1.58650 2.07636 2.47487 2.97327 3.19434 3.28269 3.54750 3.58495 3.73119 3.82577 3.84617 3.94265 4.05036 4.07254 4.27652 4.32579 4.41527 4.47184 4.55016 4.62399 4.69592 4.71494 4.82812 4.85272 4.95977 4.98710 5.07378 5.11757 5.20416 5.27809 5.32439 5.39919 5.44231 5.48970 5.69771 6.23842 6.51026 6.58298 6.90342 7.06986 7.24724 7.70986 8.33721 9.19381 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.003281 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.511363 B = 8532.494268 C = 8824.880067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.981 3.019 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.132 3.868 11 C 0.153 3.847 12 H 0.094 0.906 13 N -0.697 5.697 14 C 0.512 3.488 15 O -0.584 6.584 16 C -0.094 4.094 17 H 0.107 0.893 18 C -0.098 4.098 19 C -0.147 4.147 20 C 0.064 3.936 21 O -0.402 6.402 22 C 0.065 3.935 23 C -0.143 4.143 24 C 0.092 3.908 25 H 0.096 0.904 26 O -0.562 6.562 27 C 0.126 3.874 28 H 0.250 0.750 29 H 0.021 0.979 30 H 0.007 0.993 31 H 0.418 0.582 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.396 0.604 43 H 0.092 0.908 44 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 -21.449 7.444 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.809 3.191 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.005 3.995 11 C 0.047 3.953 12 H 0.112 0.888 13 N -0.349 5.349 14 C 0.300 3.700 15 O -0.463 6.463 16 C -0.115 4.115 17 H 0.125 0.875 18 C -0.136 4.136 19 C -0.184 4.184 20 C -0.013 4.013 21 O -0.322 6.322 22 C -0.011 4.011 23 C -0.181 4.181 24 C 0.032 3.968 25 H 0.113 0.887 26 O -0.370 6.370 27 C 0.000 4.000 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.025 0.975 31 H 0.256 0.744 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.247 0.753 43 H 0.110 0.890 44 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -1.009 -21.601 6.678 22.632 hybrid contribution -0.140 1.761 -0.344 1.800 sum -1.149 -19.840 6.334 20.858 Atomic orbital electron populations 1.69940 1.05878 1.25187 1.58351 1.25550 0.96776 1.00613 1.02278 0.84977 0.77841 0.79268 0.76996 1.19793 1.21710 1.21233 1.19420 0.90826 0.83813 1.43096 0.91000 1.44555 1.02709 1.00222 1.86737 1.21635 0.95187 0.85665 0.97036 1.21791 0.93736 0.85188 0.94609 0.88783 1.45728 1.58470 1.16422 1.14268 1.21313 0.76171 0.84044 0.88490 1.90671 1.54442 1.81820 1.19413 1.21046 0.99742 0.92912 0.97782 0.87519 1.20412 0.99863 0.95609 0.97708 1.21121 0.99428 0.99118 0.98751 1.22470 0.98107 0.92856 0.87843 1.87448 1.43138 1.59338 1.42239 1.23044 0.86765 0.95548 0.95735 1.21969 0.96043 1.01894 0.98236 1.23295 0.96710 0.94906 0.81930 0.88662 1.86200 1.55882 1.77061 1.17900 1.22550 0.84430 0.95331 0.97650 0.94016 0.96108 0.97466 0.74432 0.92859 0.91585 0.89555 0.91843 0.91993 0.88384 0.91046 0.88422 0.90375 0.89401 0.75342 0.89035 0.98296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 10.09 21.65 0.22 -54.39 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 3 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -14.03 10.27 84.03 0.86 -13.17 16 8 H 0.07 4.11 7.83 -2.92 -0.02 4.09 16 9 N -0.62 -32.67 3.40 -691.59 -2.35 -35.02 16 10 C 0.13 6.06 7.00 86.73 0.61 6.67 16 11 C 0.15 5.61 3.15 46.18 0.15 5.76 16 12 H 0.09 3.59 7.62 -2.39 -0.02 3.57 16 13 N -0.70 -20.57 4.70 -436.93 -2.05 -22.62 16 14 C 0.51 15.25 7.07 87.66 0.62 15.87 16 15 O -0.58 -22.31 15.33 -3.03 -0.05 -22.35 16 16 C -0.09 -1.99 2.23 -11.90 -0.03 -2.02 16 17 H 0.11 2.24 7.82 -2.39 -0.02 2.22 16 18 C -0.10 -2.03 4.30 28.94 0.12 -1.90 16 19 C -0.15 -2.33 5.47 28.90 0.16 -2.17 16 20 C 0.06 0.87 6.38 72.36 0.46 1.34 16 21 O -0.40 -6.90 10.17 -143.40 -1.46 -8.36 16 22 C 0.07 0.87 6.67 72.27 0.48 1.35 16 23 C -0.14 -2.21 4.81 30.11 0.14 -2.07 16 24 C 0.09 3.18 4.31 32.06 0.14 3.32 16 25 H 0.10 2.67 8.14 -2.38 -0.02 2.66 16 26 O -0.56 -17.41 12.23 -148.98 -1.82 -19.23 16 27 C 0.13 5.95 5.62 86.92 0.49 6.44 16 28 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 30 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.42 10.62 7.06 -92.71 -0.65 9.96 16 32 H 0.05 1.37 7.42 -2.39 -0.02 1.35 16 33 H 0.07 1.31 7.59 -2.39 -0.02 1.29 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 36 H 0.06 0.72 6.98 -2.39 -0.02 0.71 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.13 6.83 -2.39 -0.02 1.11 16 41 H 0.09 1.30 6.97 -2.39 -0.02 1.28 16 42 H 0.40 9.54 9.12 -74.06 -0.68 8.87 16 43 H 0.09 4.78 5.87 -2.39 -0.01 4.77 16 44 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -71.82 342.14 -1.13 -72.95 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.31 Total: 24.58 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 4.67 Total: 16.52 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.18 Total: -112.02 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -3.33 Total: -49.94 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.82 -1.13 -72.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083434726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.159 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds