Wall clock time and date at job start Tue Mar 31 2020 03:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99712 * 2 1 4 4 H 1.48499 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47069 * 300.00198 * 3 2 1 6 6 H 1.48507 * 109.46947 * 60.00040 * 3 2 1 7 7 C 1.38805 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00427 * 180.02562 * 7 2 1 9 9 N 1.36949 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.47465 * 125.62992 * 179.97438 * 9 7 2 11 11 C 1.54901 * 104.81017 * 204.05203 * 10 9 7 12 12 H 1.08992 * 111.00708 * 81.14372 * 11 10 9 13 13 N 1.46505 * 111.00119 * 204.95184 * 11 10 9 14 14 C 1.34777 * 120.00115 * 270.41745 * 13 11 10 15 15 O 1.21282 * 119.99620 * 359.97438 * 14 13 11 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 11 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 O 1.42903 * 109.47126 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46891 * 299.99597 * 19 18 17 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 19 18 23 23 C 1.55157 * 101.61639 * 323.04095 * 11 10 9 24 24 H 1.09003 * 110.71791 * 153.84562 * 23 11 10 25 25 O 1.42902 * 110.72385 * 277.11964 * 23 11 10 26 26 C 1.47017 * 125.64462 * 359.97438 * 9 7 2 27 27 H 0.97003 * 120.00421 * 359.97438 * 1 2 3 28 28 H 1.09002 * 110.34572 * 85.23249 * 10 9 7 29 29 H 1.09007 * 110.40596 * 322.90067 * 10 9 7 30 30 H 0.97003 * 120.00244 * 90.41775 * 13 11 10 31 31 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 32 32 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 33 33 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 34 34 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 36 36 H 1.08992 * 109.47554 * 59.99639 * 19 18 17 37 37 H 0.96699 * 114.00345 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47097 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.47142 * 300.00176 * 21 19 18 40 40 H 1.09001 * 109.47375 * 59.99908 * 22 21 19 41 41 H 1.09000 * 109.47140 * 179.97438 * 22 21 19 42 42 H 0.96700 * 113.99861 * 180.02562 * 25 23 11 43 43 H 1.08994 * 109.88669 * 59.57585 * 26 9 7 44 44 H 1.09000 * 109.88462 * 298.40798 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 1.9342 -3.7313 -0.0028 11 6 0.8519 -4.6558 -0.6140 12 1 0.8564 -4.5962 -1.7023 13 7 1.0293 -6.0393 -0.1660 14 6 1.8116 -6.8808 -0.8706 15 8 2.3684 -6.4927 -1.8757 16 6 1.9936 -8.3041 -0.4102 17 6 2.9220 -9.0389 -1.3792 18 6 3.1062 -10.4841 -0.9121 19 6 1.7472 -11.1859 -0.8768 20 8 1.9192 -12.5356 -0.4399 21 6 0.8188 -10.4512 0.0923 22 6 0.6345 -9.0060 -0.3748 23 6 -0.4483 -4.0441 -0.0286 24 1 -1.2985 -4.2512 -0.6786 25 8 -0.6882 -4.5350 1.2918 26 6 -0.1374 -2.5328 -0.0017 27 1 -0.4851 0.8400 0.0004 28 1 2.1679 -4.0424 1.0154 29 1 2.8332 -3.7407 -0.6191 30 1 0.5837 -6.3499 0.6377 31 1 2.4323 -8.3099 0.5876 32 1 3.8901 -8.5386 -1.4047 33 1 2.4836 -9.0331 -2.3772 34 1 3.7680 -11.0074 -1.6022 35 1 3.5444 -10.4903 0.0860 36 1 1.3090 -11.1798 -1.8747 37 1 1.0966 -13.0418 -0.3931 38 1 -0.1493 -10.9514 0.1178 39 1 1.2570 -10.4573 1.0904 40 1 0.1963 -8.9998 -1.3729 41 1 -0.0272 -8.4826 0.3153 42 1 -1.4898 -4.1832 1.7026 43 1 -0.5575 -2.0520 -0.8851 44 1 -0.5544 -2.0848 0.9003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083435294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:46 Heat of formation + Delta-G solvation = -126.319946 kcal Electronic energy + Delta-G solvation = -25006.600646 eV Core-core repulsion = 21344.773600 eV Total energy + Delta-G solvation = -3661.827046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27105 -38.76958 -37.77031 -35.59333 -34.85088 -33.97325 -31.76799 -31.01627 -30.10554 -28.38660 -26.97927 -24.60265 -23.28588 -22.96897 -20.84753 -20.43752 -20.01446 -19.72135 -17.56900 -17.48938 -16.90465 -16.67227 -15.87815 -15.31371 -14.88043 -14.80066 -14.55860 -14.11727 -14.04494 -13.83516 -13.25195 -13.09705 -12.76968 -12.65109 -12.60580 -12.54269 -12.17735 -11.83231 -11.59597 -11.35056 -11.30038 -10.96876 -10.94640 -10.85729 -10.52840 -10.48102 -10.42478 -10.09948 -10.08292 -9.82960 -9.53786 -9.30614 -8.70505 -8.62774 -6.88103 -5.75839 -3.08710 2.82998 3.34275 3.39349 3.45229 3.47710 3.87366 4.35539 4.40790 4.47922 4.54744 4.69496 4.84647 4.91749 5.02901 5.12453 5.20393 5.21990 5.28201 5.36365 5.47932 5.53969 5.63206 5.70095 5.71674 5.75252 5.84471 5.86624 5.92063 6.05422 6.09109 6.17865 6.21896 6.62199 6.66785 6.94326 7.31978 7.32858 7.43508 7.71982 7.83770 8.05115 8.18928 8.49165 9.17212 9.77291 10.41674 11.36532 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.003025 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.123185 B = 9253.253037 C = 9794.215558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.132 3.868 11 C 0.138 3.862 12 H 0.102 0.898 13 N -0.707 5.707 14 C 0.512 3.488 15 O -0.543 6.543 16 C -0.108 4.108 17 C -0.096 4.096 18 C -0.112 4.112 19 C 0.102 3.898 20 O -0.570 6.570 21 C -0.149 4.149 22 C -0.108 4.108 23 C 0.068 3.932 24 H 0.060 0.940 25 O -0.568 6.568 26 C 0.154 3.846 27 H 0.252 0.748 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.406 0.594 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.376 0.624 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.379 0.621 43 H 0.055 0.945 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 -21.662 0.737 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.033 3.967 12 H 0.120 0.880 13 N -0.359 5.359 14 C 0.298 3.702 15 O -0.420 6.420 16 C -0.129 4.129 17 C -0.134 4.134 18 C -0.150 4.150 19 C 0.044 3.956 20 O -0.376 6.376 21 C -0.187 4.187 22 C -0.146 4.146 23 C 0.008 3.992 24 H 0.078 0.922 25 O -0.374 6.374 26 C 0.029 3.971 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.241 0.759 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.227 0.773 43 H 0.073 0.927 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.077 -21.265 -0.087 21.292 hybrid contribution -1.017 1.070 0.551 1.576 sum -2.094 -20.195 0.464 20.309 Atomic orbital electron populations 1.69923 1.04908 1.24997 1.57675 1.24795 0.95794 0.97730 1.02288 0.85992 0.78778 0.83508 0.77208 1.20445 1.21709 1.21761 1.19146 0.90589 0.82170 1.43195 0.90221 1.44307 1.01261 0.99936 1.87298 1.21837 0.94628 0.85756 0.97352 1.22327 0.95285 0.79829 0.99305 0.87980 1.45813 1.49306 1.11331 1.29413 1.20580 0.78635 0.87280 0.83707 1.90705 1.47556 1.78062 1.25690 1.21382 0.97853 0.91973 1.01737 1.21303 1.00176 0.93213 0.98715 1.21508 0.95806 0.94910 1.02743 1.21883 0.96323 0.81347 0.96090 1.86520 1.36574 1.23936 1.90525 1.22256 0.99955 0.95911 1.00540 1.21471 0.95612 0.94955 1.02569 1.23499 0.95601 0.96941 0.83162 0.92199 1.86245 1.49189 1.71609 1.30331 1.21855 0.85567 0.87765 1.01922 0.93788 0.95704 0.93797 0.75865 0.88410 0.90318 0.90931 0.90965 0.91110 0.92630 0.77704 0.91428 0.90784 0.91183 0.90787 0.77314 0.92681 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.86 10.31 55.49 0.57 -26.29 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.56 3.40 -170.05 -0.58 -16.14 16 10 C 0.13 2.91 6.92 -2.51 -0.02 2.90 16 11 C 0.14 2.56 3.25 -65.78 -0.21 2.34 16 12 H 0.10 2.03 7.63 -51.93 -0.40 1.63 16 13 N -0.71 -10.57 5.07 -51.73 -0.26 -10.84 16 14 C 0.51 7.61 7.15 -10.99 -0.08 7.53 16 15 O -0.54 -10.24 15.67 5.56 0.09 -10.15 16 16 C -0.11 -1.14 2.53 -91.77 -0.23 -1.37 16 17 C -0.10 -1.00 4.49 -26.73 -0.12 -1.12 16 18 C -0.11 -1.01 5.57 -26.73 -0.15 -1.16 16 19 C 0.10 0.82 3.47 -26.73 -0.09 0.73 16 20 O -0.57 -4.74 13.32 -35.23 -0.47 -5.21 16 21 C -0.15 -1.06 5.54 -26.73 -0.15 -1.21 16 22 C -0.11 -0.91 5.10 -26.73 -0.14 -1.05 16 23 C 0.07 1.20 4.20 -24.90 -0.10 1.10 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 O -0.57 -8.82 12.14 -35.23 -0.43 -9.25 16 26 C 0.15 3.61 5.14 -3.07 -0.02 3.60 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.41 5.32 6.99 -40.82 -0.29 5.04 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 1.55 9.08 45.56 0.41 1.97 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.38 4.54 9.12 45.56 0.42 4.96 16 43 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 44 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -33.83 348.88 -8.03 -41.86 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.63 Total: 8.08 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.56 Total: 5.43 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.27 Total: -53.26 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.81 Total: -24.61 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.83 -8.03 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083435294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.462 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds