Wall clock time and date at job start Tue Mar 31 2020 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99712 * 2 1 4 4 H 1.48499 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47069 * 300.00198 * 3 2 1 6 6 H 1.48507 * 109.46947 * 60.00040 * 3 2 1 7 7 C 1.38805 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00427 * 180.02562 * 7 2 1 9 9 N 1.36949 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.47465 * 125.62992 * 179.97438 * 9 7 2 11 11 C 1.54901 * 104.81017 * 204.05203 * 10 9 7 12 12 H 1.08992 * 111.00708 * 81.14372 * 11 10 9 13 13 N 1.46505 * 111.00119 * 204.95184 * 11 10 9 14 14 C 1.34777 * 120.00115 * 270.41745 * 13 11 10 15 15 O 1.21282 * 119.99620 * 359.97438 * 14 13 11 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 11 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 O 1.42903 * 109.47126 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46891 * 299.99597 * 19 18 17 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 19 18 23 23 C 1.55157 * 101.61639 * 323.04095 * 11 10 9 24 24 H 1.09003 * 110.71791 * 153.84562 * 23 11 10 25 25 O 1.42902 * 110.72385 * 277.11964 * 23 11 10 26 26 C 1.47017 * 125.64462 * 359.97438 * 9 7 2 27 27 H 0.97003 * 120.00421 * 359.97438 * 1 2 3 28 28 H 1.09002 * 110.34572 * 85.23249 * 10 9 7 29 29 H 1.09007 * 110.40596 * 322.90067 * 10 9 7 30 30 H 0.97003 * 120.00244 * 90.41775 * 13 11 10 31 31 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 32 32 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 33 33 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 34 34 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 36 36 H 1.08992 * 109.47554 * 59.99639 * 19 18 17 37 37 H 0.96699 * 114.00345 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47097 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.47142 * 300.00176 * 21 19 18 40 40 H 1.09001 * 109.47375 * 59.99908 * 22 21 19 41 41 H 1.09000 * 109.47140 * 179.97438 * 22 21 19 42 42 H 0.96700 * 113.99861 * 180.02562 * 25 23 11 43 43 H 1.08994 * 109.88669 * 59.57585 * 26 9 7 44 44 H 1.09000 * 109.88462 * 298.40798 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 1.9342 -3.7313 -0.0028 11 6 0.8519 -4.6558 -0.6140 12 1 0.8564 -4.5962 -1.7023 13 7 1.0293 -6.0393 -0.1660 14 6 1.8116 -6.8808 -0.8706 15 8 2.3684 -6.4927 -1.8757 16 6 1.9936 -8.3041 -0.4102 17 6 2.9220 -9.0389 -1.3792 18 6 3.1062 -10.4841 -0.9121 19 6 1.7472 -11.1859 -0.8768 20 8 1.9192 -12.5356 -0.4399 21 6 0.8188 -10.4512 0.0923 22 6 0.6345 -9.0060 -0.3748 23 6 -0.4483 -4.0441 -0.0286 24 1 -1.2985 -4.2512 -0.6786 25 8 -0.6882 -4.5350 1.2918 26 6 -0.1374 -2.5328 -0.0017 27 1 -0.4851 0.8400 0.0004 28 1 2.1679 -4.0424 1.0154 29 1 2.8332 -3.7407 -0.6191 30 1 0.5837 -6.3499 0.6377 31 1 2.4323 -8.3099 0.5876 32 1 3.8901 -8.5386 -1.4047 33 1 2.4836 -9.0331 -2.3772 34 1 3.7680 -11.0074 -1.6022 35 1 3.5444 -10.4903 0.0860 36 1 1.3090 -11.1798 -1.8747 37 1 1.0966 -13.0418 -0.3931 38 1 -0.1493 -10.9514 0.1178 39 1 1.2570 -10.4573 1.0904 40 1 0.1963 -8.9998 -1.3729 41 1 -0.0272 -8.4826 0.3153 42 1 -1.4898 -4.1832 1.7026 43 1 -0.5575 -2.0520 -0.8851 44 1 -0.5544 -2.0848 0.9003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083435294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:45 Heat of formation + Delta-G solvation = -154.617559 kcal Electronic energy + Delta-G solvation = -25007.827722 eV Core-core repulsion = 21344.773600 eV Total energy + Delta-G solvation = -3663.054122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40147 -39.93314 -38.97691 -36.47129 -36.33041 -35.44748 -33.62284 -31.78433 -31.07892 -30.05160 -28.66087 -26.46419 -24.30657 -23.65298 -22.39339 -21.82776 -21.32568 -20.70204 -19.24705 -18.31226 -18.18422 -17.99166 -16.96853 -16.82289 -16.46137 -15.91553 -15.67469 -15.45625 -15.23979 -14.84042 -14.65600 -14.53471 -14.24536 -14.17007 -13.76301 -13.32942 -13.20915 -13.19753 -12.85070 -12.79706 -12.62614 -12.32239 -12.28968 -12.09691 -12.04743 -11.93765 -11.88867 -11.71531 -11.10821 -10.90745 -10.79404 -10.76572 -10.62303 -10.05825 -8.96410 -7.90542 -5.26417 1.44219 1.45042 1.55635 1.63700 2.11019 2.47644 3.16688 3.27571 3.28573 3.59593 3.65959 3.72479 3.79355 3.89194 3.95201 4.13531 4.23434 4.25867 4.32487 4.38893 4.44441 4.51618 4.52454 4.66016 4.80549 4.82877 4.95340 5.04183 5.04900 5.10567 5.19075 5.20934 5.32225 5.34675 5.43585 5.45609 5.51784 5.63659 6.13039 6.63094 6.87604 6.95254 7.05217 7.30248 7.69095 8.32571 9.19465 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.003025 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.123185 B = 9253.253037 C = 9794.215558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.132 3.868 11 C 0.151 3.849 12 H 0.088 0.912 13 N -0.695 5.695 14 C 0.511 3.489 15 O -0.586 6.586 16 C -0.099 4.099 17 C -0.092 4.092 18 C -0.109 4.109 19 C 0.103 3.897 20 O -0.586 6.586 21 C -0.140 4.140 22 C -0.104 4.104 23 C 0.094 3.906 24 H 0.092 0.908 25 O -0.563 6.563 26 C 0.159 3.841 27 H 0.250 0.750 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.419 0.581 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.398 0.602 43 H 0.024 0.976 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 -23.482 1.675 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.005 3.995 11 C 0.044 3.956 12 H 0.106 0.894 13 N -0.347 5.347 14 C 0.299 3.701 15 O -0.466 6.466 16 C -0.120 4.120 17 C -0.130 4.130 18 C -0.146 4.146 19 C 0.044 3.956 20 O -0.394 6.394 21 C -0.178 4.178 22 C -0.142 4.142 23 C 0.034 3.966 24 H 0.110 0.890 25 O -0.372 6.372 26 C 0.034 3.966 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.257 0.743 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.249 0.751 43 H 0.042 0.958 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.951 -23.138 0.889 23.237 hybrid contribution -0.724 1.609 0.273 1.785 sum -2.674 -21.528 1.162 21.725 Atomic orbital electron populations 1.70117 1.06011 1.25454 1.58043 1.25611 0.96789 1.00803 1.02207 0.84991 0.77983 0.79265 0.76957 1.19525 1.21583 1.21448 1.19442 0.90869 0.83698 1.43500 0.90670 1.44591 1.02582 1.00594 1.87172 1.21885 0.95174 0.85309 0.97115 1.21896 0.94215 0.81195 0.98310 0.89384 1.45661 1.49491 1.09682 1.29881 1.21387 0.77255 0.88697 0.82790 1.90693 1.49112 1.79108 1.27716 1.21407 0.99561 0.88892 1.02143 1.21231 0.99244 0.94213 0.98361 1.21445 0.96806 0.93796 1.02588 1.21834 0.95614 0.81492 0.96660 1.86474 1.38339 1.24083 1.90519 1.22193 1.00819 0.94713 1.00072 1.21475 0.94017 0.95782 1.02897 1.23099 0.96121 0.92517 0.84885 0.89030 1.86206 1.50718 1.71020 1.29227 1.21730 0.84052 0.91681 0.99181 0.94103 0.95756 0.95637 0.74314 0.86773 0.91963 0.91960 0.91234 0.90986 0.92358 0.75587 0.89285 0.90596 0.91503 0.89581 0.75065 0.95798 0.95505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.00 10.31 21.65 0.22 -55.78 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.25 -14.28 10.28 84.03 0.86 -13.42 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -32.99 3.40 -691.91 -2.35 -35.34 16 10 C 0.13 5.94 6.92 86.84 0.60 6.54 16 11 C 0.15 5.50 3.25 46.38 0.15 5.65 16 12 H 0.09 3.51 7.63 -2.39 -0.02 3.49 16 13 N -0.70 -19.64 5.07 -435.98 -2.21 -21.85 16 14 C 0.51 14.69 7.15 87.66 0.63 15.31 16 15 O -0.59 -22.33 15.67 -3.04 -0.05 -22.38 16 16 C -0.10 -1.91 2.53 -11.54 -0.03 -1.94 16 17 C -0.09 -1.86 4.49 30.59 0.14 -1.73 16 18 C -0.11 -1.79 5.57 30.59 0.17 -1.62 16 19 C 0.10 1.40 3.47 30.59 0.11 1.50 16 20 O -0.59 -8.21 13.32 -148.98 -1.98 -10.20 16 21 C -0.14 -1.51 5.54 30.59 0.17 -1.34 16 22 C -0.10 -1.44 5.10 30.60 0.16 -1.29 16 23 C 0.09 3.20 4.20 31.78 0.13 3.34 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 O -0.56 -16.00 12.14 -148.98 -1.81 -17.80 16 26 C 0.16 7.55 5.14 86.73 0.45 8.00 16 27 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.42 9.76 6.99 -92.71 -0.65 9.11 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.39 2.09 9.08 -74.06 -0.67 1.42 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.03 7.57 -2.39 -0.02 1.01 16 42 H 0.40 8.36 9.12 -74.06 -0.68 7.68 16 43 H 0.02 1.27 7.38 -2.39 -0.02 1.25 16 44 H 0.03 1.40 7.43 -2.39 -0.02 1.38 16 Total: -1.00 -74.90 348.88 -3.12 -78.03 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -0.97 Total: 21.02 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 4.00 Total: 15.97 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.34 Total: -112.97 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -3.84 Total: -50.38 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -74.90 -3.12 -78.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083435294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.592 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds