Wall clock time and date at job start Tue Mar 31 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47048 * 125.41309 * 2 1 4 4 C 1.54108 * 103.86379 * 179.87027 * 3 2 1 5 5 H 1.08997 * 110.33773 * 118.86807 * 4 3 2 6 6 C 1.50707 * 110.75705 * 241.67909 * 4 3 2 7 7 O 1.21280 * 119.99733 * 96.01651 * 6 4 3 8 8 N 1.34775 * 119.99648 * 276.01543 * 6 4 3 9 9 C 1.46505 * 119.99569 * 180.02562 * 8 6 4 10 10 H 1.09001 * 110.88619 * 31.11749 * 9 8 6 11 11 C 1.54912 * 111.00204 * 267.19483 * 9 8 6 12 12 N 1.47426 * 104.82986 * 204.91342 * 11 9 8 13 13 C 1.36933 * 125.64733 * 204.14813 * 12 11 9 14 14 H 1.08001 * 120.00352 * 0.02562 * 13 12 11 15 15 C 1.38821 * 119.99955 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99539 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99997 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47409 * 90.00237 * 17 15 13 19 19 H 1.48505 * 109.47331 * 210.00222 * 17 15 13 20 20 H 1.48503 * 109.47327 * 330.00203 * 17 15 13 21 21 C 1.47020 * 108.70126 * 24.13495 * 12 11 9 22 22 C 1.54327 * 107.27516 * 358.93399 * 21 12 11 23 23 H 1.08994 * 110.72079 * 219.45079 * 22 21 12 24 24 O 1.42902 * 110.86874 * 96.24027 * 22 21 12 25 25 N 1.47052 * 103.86012 * 0.37463 * 4 3 2 26 26 C 1.33951 * 109.18171 * 359.75639 * 25 4 3 27 27 O 1.21583 * 123.04308 * 180.02562 * 26 25 4 28 28 H 1.09002 * 109.47391 * 179.71772 * 1 2 3 29 29 H 1.09001 * 109.46813 * 59.71829 * 1 2 3 30 30 H 1.09004 * 109.47041 * 299.71956 * 1 2 3 31 31 H 1.09001 * 110.55067 * 298.59257 * 3 2 1 32 32 H 1.08999 * 110.55023 * 61.40748 * 3 2 1 33 33 H 0.96996 * 120.00428 * 0.02562 * 8 6 4 34 34 H 1.08998 * 110.36830 * 323.76031 * 11 9 8 35 35 H 1.08999 * 110.36284 * 86.08490 * 11 9 8 36 36 H 0.96997 * 119.99454 * 179.97438 * 16 15 13 37 37 H 1.09006 * 109.88147 * 239.52143 * 21 12 11 38 38 H 1.08998 * 109.88334 * 118.35508 * 21 12 11 39 39 H 0.96698 * 113.99276 * 66.39451 * 24 22 21 40 40 H 0.96996 * 125.40700 * 179.75319 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1984 0.0000 4 6 3.7504 0.6324 0.0034 5 1 4.2857 0.9510 -0.8911 6 6 4.4905 1.0597 1.2448 7 8 4.5386 0.3219 2.2062 8 7 5.0988 2.2616 1.2864 9 6 5.8187 2.6767 2.4930 10 1 6.2436 1.8150 3.0078 11 6 4.8980 3.4900 3.4367 12 7 5.8160 4.3271 4.2303 13 6 5.5510 4.8498 5.4680 14 1 4.6002 4.6580 5.9429 15 6 6.5046 5.6262 6.1122 16 7 7.6631 5.8603 5.5331 17 14 6.1434 6.3385 7.8008 18 1 6.5790 5.3784 8.8466 19 1 6.8791 7.6179 7.9661 20 1 4.6850 6.5856 7.9323 21 6 7.0631 4.5076 3.4730 22 6 6.9167 3.7193 2.1544 23 1 7.8523 3.2238 1.8954 24 8 6.4901 4.5765 1.0935 25 7 3.5537 -0.8249 -0.0044 26 6 2.2411 -1.0918 -0.0059 27 8 1.7945 -2.2226 -0.0115 28 1 -0.3634 -1.0276 -0.0051 29 1 -0.3633 0.5182 -0.8875 30 1 -0.3633 0.5095 0.8925 31 1 2.1407 1.7933 -0.8962 32 1 2.1407 1.7933 0.8962 33 1 5.0600 2.8518 0.5177 34 1 4.2187 4.1155 2.8576 35 1 4.3362 2.8205 4.0881 36 1 8.3292 6.4031 5.9831 37 1 7.9045 4.1182 4.0462 38 1 7.2163 5.5651 3.2577 39 1 7.1408 5.2466 0.8436 40 1 4.2620 -1.4876 -0.0080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083700051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:40 Heat of formation + Delta-G solvation = -88.033655 kcal Electronic energy + Delta-G solvation = -24743.305258 eV Core-core repulsion = 20979.598087 eV Total energy + Delta-G solvation = -3763.707171 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41613 -40.75634 -39.37053 -37.38296 -36.41975 -35.49538 -35.08668 -33.62317 -30.96839 -29.96165 -28.82707 -27.98708 -26.40200 -24.78204 -22.45896 -21.89705 -21.60667 -21.42702 -19.35564 -18.81059 -18.65210 -18.18039 -17.40830 -16.88720 -16.83140 -16.46754 -16.00076 -15.75300 -15.47684 -15.17983 -15.00443 -14.71645 -14.52178 -14.49308 -14.35841 -13.93500 -13.47789 -13.21033 -13.17178 -12.97025 -12.79827 -12.73323 -12.26026 -12.12277 -11.94305 -11.86931 -11.56670 -11.35040 -10.84570 -10.75978 -10.41599 -10.10523 -9.59028 -8.93850 -7.88919 -5.24191 1.31855 1.45575 1.47139 1.55238 1.60374 1.83122 2.14157 2.48355 2.90489 3.18396 3.29959 3.30608 3.50054 3.71450 3.86843 3.92492 3.97841 4.13193 4.29520 4.50982 4.52180 4.57550 4.68538 4.72845 4.84201 4.86930 4.93516 5.04999 5.36456 5.44459 5.50375 5.62001 5.66970 6.01961 6.15342 6.33603 6.57032 6.90798 7.07377 7.21247 7.43590 7.71916 8.34454 9.20692 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.003404 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.562133 B = 8223.304506 C = 8760.062754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.638 5.638 3 C 0.104 3.896 4 C 0.114 3.886 5 H 0.168 0.832 6 C 0.499 3.501 7 O -0.577 6.577 8 N -0.683 5.683 9 C 0.151 3.849 10 H 0.088 0.912 11 C 0.132 3.868 12 N -0.623 5.623 13 C -0.247 4.247 14 H 0.076 0.924 15 C -0.059 4.059 16 N -0.947 5.947 17 Si 0.977 3.023 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.272 1.272 21 C 0.157 3.843 22 C 0.096 3.904 23 H 0.090 0.910 24 O -0.560 6.560 25 N -0.714 5.714 26 C 0.692 3.308 27 O -0.635 6.635 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.425 0.575 34 H 0.034 0.966 35 H 0.023 0.977 36 H 0.249 0.751 37 H 0.021 0.979 38 H 0.027 0.973 39 H 0.399 0.601 40 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 -4.099 -18.504 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.376 5.376 3 C -0.019 4.019 4 C 0.005 3.995 5 H 0.186 0.814 6 C 0.284 3.716 7 O -0.455 6.455 8 N -0.336 5.336 9 C 0.044 3.956 10 H 0.106 0.894 11 C 0.005 3.995 12 N -0.350 5.350 13 C -0.376 4.376 14 H 0.094 0.906 15 C -0.252 4.252 16 N -0.595 5.595 17 Si 0.805 3.195 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.197 1.197 21 C 0.032 3.968 22 C 0.035 3.965 23 H 0.108 0.892 24 O -0.369 6.369 25 N -0.374 5.374 26 C 0.392 3.608 27 O -0.517 6.517 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.250 0.750 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -7.672 -5.377 -17.661 19.992 hybrid contribution 1.003 0.760 1.339 1.838 sum -6.669 -4.617 -16.322 18.226 Atomic orbital electron populations 1.21627 0.74151 1.03539 1.03511 1.47206 1.07404 1.05601 1.77429 1.22598 0.84658 0.88209 1.06419 1.22103 0.98094 0.81827 0.97516 0.81449 1.21439 0.79014 0.81358 0.89799 1.90768 1.61447 1.54475 1.38832 1.45509 1.52692 1.17917 1.17450 1.21921 0.92105 0.95324 0.86270 0.89437 1.21899 0.92910 0.91967 0.92715 1.44549 1.14370 1.58943 1.17091 1.19405 1.00224 1.25082 0.92899 0.90611 1.25565 0.96249 1.01037 1.02350 1.70103 1.06849 1.43618 1.38958 0.85108 0.77649 0.77279 0.79463 1.21493 1.21580 1.19657 1.21744 0.88183 0.97261 0.89623 1.23063 0.96015 0.90228 0.87168 0.89201 1.86177 1.48708 1.49337 1.52669 1.44873 1.06301 1.07506 1.78761 1.16154 0.82587 0.84703 0.77346 1.90904 1.76829 1.23062 1.60948 0.91355 0.88742 0.91003 0.83784 0.89903 0.73549 0.94834 0.95816 0.94160 0.96091 0.95437 0.74979 0.72280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.65 11.21 127.77 1.43 3.08 16 2 N -0.64 -12.49 3.36 -863.43 -2.90 -15.39 16 3 C 0.10 1.32 7.33 86.65 0.64 1.96 16 4 C 0.11 1.70 4.16 44.52 0.19 1.89 16 5 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 6 C 0.50 11.99 6.95 87.66 0.61 12.60 16 7 O -0.58 -20.53 16.24 -3.03 -0.05 -20.58 16 8 N -0.68 -15.44 5.17 -435.94 -2.25 -17.69 16 9 C 0.15 4.92 3.31 46.38 0.15 5.07 16 10 H 0.09 3.24 7.54 -2.39 -0.02 3.22 16 11 C 0.13 5.42 6.92 86.86 0.60 6.02 16 12 N -0.62 -31.36 3.39 -691.97 -2.35 -33.71 16 13 C -0.25 -13.86 10.28 84.04 0.86 -13.00 16 14 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 15 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 16 N -0.95 -54.65 10.31 21.65 0.22 -54.43 16 17 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 C 0.16 7.10 5.14 86.73 0.45 7.54 16 22 C 0.10 2.95 4.19 31.78 0.13 3.09 16 23 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 24 O -0.56 -13.65 12.15 -148.98 -1.81 -15.46 16 25 N -0.71 -15.29 5.63 -460.33 -2.59 -17.89 16 26 C 0.69 18.70 8.60 179.57 1.55 20.25 16 27 O -0.64 -22.88 17.29 -3.98 -0.07 -22.95 16 28 H 0.07 1.26 7.52 -2.39 -0.02 1.24 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 1.21 7.73 -2.39 -0.02 1.19 16 33 H 0.43 6.90 7.58 -92.71 -0.70 6.20 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.02 1.08 7.38 -2.38 -0.02 1.06 16 38 H 0.03 1.37 7.44 -2.39 -0.02 1.35 16 39 H 0.40 7.04 9.12 -74.06 -0.68 6.37 16 40 H 0.43 8.80 8.96 -92.71 -0.83 7.97 16 Total: -1.00 -84.17 334.40 -3.81 -87.97 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -1.11 Total: 17.16 kcal Atomic # 6 Polarization: 38.62 SS G_CDS: 7.07 Total: 45.69 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -9.87 Total: -139.11 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -1.93 Total: -59.00 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -84.17 -3.81 -87.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083700051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.060 kcal (2) G-P(sol) polarization free energy of solvation -84.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds