Wall clock time and date at job start Tue Mar 31 2020 04:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.54871 * 2 1 4 4 O 1.21283 * 120.00472 * 239.82531 * 3 2 1 5 5 N 1.34777 * 119.99538 * 59.81869 * 3 2 1 6 6 C 1.46499 * 119.99665 * 179.72653 * 5 3 2 7 7 H 1.09003 * 110.88828 * 31.39407 * 6 5 3 8 8 C 1.54916 * 111.00526 * 267.47216 * 6 5 3 9 9 N 1.47421 * 104.83435 * 204.91702 * 8 6 5 10 10 C 1.36940 * 125.65109 * 204.15554 * 9 8 6 11 11 H 1.07997 * 119.99699 * 359.97438 * 10 9 8 12 12 C 1.38809 * 120.00017 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47266 * 89.99647 * 14 12 10 16 16 H 1.48497 * 109.46993 * 210.00007 * 14 12 10 17 17 H 1.48498 * 109.47138 * 329.99557 * 14 12 10 18 18 C 1.47024 * 108.70119 * 24.12897 * 9 8 6 19 19 C 1.54320 * 107.27409 * 358.93990 * 18 9 8 20 20 H 1.08992 * 110.72587 * 219.44291 * 19 18 9 21 21 O 1.42896 * 110.87100 * 96.23854 * 19 18 9 22 22 C 1.53180 * 109.61674 * 120.22629 * 2 1 3 23 23 C 1.53088 * 109.16678 * 176.89096 * 22 2 1 24 24 O 1.42902 * 109.41339 * 302.38871 * 23 22 2 25 25 C 1.42910 * 114.09909 * 61.15704 * 24 23 22 26 26 C 1.53093 * 109.41433 * 298.84446 * 25 24 23 27 27 H 1.09005 * 109.46645 * 59.99521 * 1 2 3 28 28 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46550 * 300.00319 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 5 3 2 31 31 H 1.08996 * 110.36483 * 323.75950 * 8 6 5 32 32 H 1.09007 * 110.36437 * 86.07790 * 8 6 5 33 33 H 0.97001 * 119.99919 * 180.02562 * 13 12 10 34 34 H 1.09006 * 109.88273 * 239.52156 * 18 9 8 35 35 H 1.09002 * 109.88091 * 118.35858 * 18 9 8 36 36 H 0.96703 * 114.00258 * 66.39649 * 21 19 18 37 37 H 1.09003 * 109.51802 * 296.79605 * 22 2 1 38 38 H 1.08999 * 109.52163 * 56.98203 * 22 2 1 39 39 H 1.08997 * 109.48202 * 182.40879 * 23 22 2 40 40 H 1.08995 * 109.49413 * 62.37581 * 23 22 2 41 41 H 1.08995 * 109.48206 * 178.86043 * 25 24 23 42 42 H 1.08999 * 109.48589 * 58.82959 * 25 24 23 43 43 H 1.09006 * 109.51965 * 297.70320 * 26 25 24 44 44 H 1.09001 * 109.52151 * 177.51362 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0342 1.4201 0.0000 4 8 2.7347 1.8150 -0.9080 5 7 1.7067 2.2514 1.0090 6 6 2.2018 3.6302 1.0121 7 1 2.3159 4.0045 -0.0053 8 6 3.5324 3.7407 1.7977 9 7 3.5914 5.1442 2.2447 10 6 4.7320 5.8361 2.5540 11 1 5.6944 5.3519 2.4787 12 6 4.6511 7.1594 2.9651 13 7 3.4781 7.7494 3.0573 14 14 6.2069 8.1030 3.3876 15 1 6.7260 8.7731 2.1683 16 1 5.9011 9.1241 4.4216 17 1 7.2304 7.1618 3.9089 18 6 2.2229 5.6783 2.3030 19 6 1.2719 4.5532 1.8433 20 1 0.4715 4.9546 1.2219 21 8 0.7343 3.8508 2.9655 22 6 2.0443 -0.7264 1.2467 23 6 3.5731 -0.7884 1.1975 24 8 3.9833 -1.4478 -0.0021 25 6 3.5713 -0.7878 -1.2009 26 6 2.0424 -0.7256 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.1467 1.9356 1.7354 31 1 3.5230 3.0691 2.6561 32 1 4.3771 3.5140 1.1469 33 1 3.4217 8.6743 3.3443 34 1 2.1311 6.5364 1.6371 35 1 1.9828 5.9721 3.3248 36 1 0.1459 4.3835 3.5180 37 1 1.7302 -0.1850 2.1392 38 1 1.6392 -1.7380 1.2719 39 1 3.9424 -1.3418 2.0609 40 1 3.9789 0.2230 1.2132 41 1 3.9394 -1.3406 -2.0651 42 1 3.9769 0.2238 -1.2167 43 1 1.6374 -1.7373 -1.2731 44 1 1.7271 -0.1838 -2.1396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083860964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:27 Heat of formation + Delta-G solvation = -108.756016 kcal Electronic energy + Delta-G solvation = -26074.393397 eV Core-core repulsion = 22413.327981 eV Total energy + Delta-G solvation = -3661.065416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86277 -38.68656 -37.55597 -34.95160 -34.85314 -33.97261 -31.70235 -31.03246 -28.73190 -28.35513 -27.08134 -24.68812 -23.71977 -23.52104 -22.06081 -20.51450 -20.09367 -19.29784 -17.36048 -16.93351 -16.56854 -16.00330 -15.97376 -15.42551 -15.04888 -14.84681 -14.54265 -14.29520 -14.03601 -13.94321 -13.19650 -12.92334 -12.73370 -12.73283 -12.52715 -12.27618 -12.21919 -12.09277 -12.04372 -11.36690 -11.31483 -10.98665 -10.85446 -10.65565 -10.55082 -10.54872 -10.44443 -10.12999 -9.84059 -9.68435 -9.37177 -9.21981 -8.71934 -8.64777 -6.89985 -5.77085 -3.10159 2.75821 3.29655 3.39047 3.44260 3.46079 3.89239 4.38021 4.41428 4.50153 4.58596 4.65141 4.91607 4.99634 5.19644 5.25936 5.34108 5.34523 5.41420 5.48503 5.51805 5.52898 5.58983 5.68537 5.69388 5.80129 5.84753 5.89738 5.91544 5.98781 6.02866 6.14972 6.19556 6.58661 6.62455 6.90438 7.20340 7.30237 7.41800 7.70039 7.78885 8.03266 8.17401 8.43319 9.15677 9.75848 10.40040 11.35171 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.004147 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.573057 B = 6750.137348 C = 7427.670957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C 0.518 3.482 4 O -0.541 6.541 5 N -0.704 5.704 6 C 0.137 3.863 7 H 0.104 0.896 8 C 0.133 3.867 9 N -0.600 5.600 10 C -0.225 4.225 11 H 0.079 0.921 12 C -0.008 4.008 13 N -0.927 5.927 14 Si 0.914 3.086 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.155 3.845 19 C 0.068 3.932 20 H 0.060 0.940 21 O -0.568 6.568 22 C -0.142 4.142 23 C 0.057 3.943 24 O -0.385 6.385 25 C 0.047 3.953 26 C -0.127 4.127 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.406 0.594 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.253 0.747 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.379 0.621 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -16.015 -4.225 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C 0.304 3.696 4 O -0.418 6.418 5 N -0.355 5.355 6 C 0.031 3.969 7 H 0.122 0.878 8 C 0.005 3.995 9 N -0.327 5.327 10 C -0.353 4.353 11 H 0.097 0.903 12 C -0.204 4.204 13 N -0.575 5.575 14 Si 0.745 3.255 15 H -0.215 1.215 16 H -0.217 1.217 17 H -0.206 1.206 18 C 0.029 3.971 19 C 0.008 3.992 20 H 0.078 0.922 21 O -0.374 6.374 22 C -0.180 4.180 23 C -0.020 4.020 24 O -0.304 6.304 25 C -0.029 4.029 26 C -0.165 4.165 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.242 0.758 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.227 0.773 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.056 -16.145 -5.042 18.735 hybrid contribution -0.078 1.270 0.877 1.546 sum -8.134 -14.874 -4.165 17.457 Atomic orbital electron populations 1.21831 0.92220 1.02781 1.02764 1.20887 0.97365 0.92559 0.97796 1.20458 0.80154 0.87085 0.81932 1.90651 1.37854 1.76999 1.36314 1.45794 1.52509 1.12175 1.25002 1.22365 0.94766 0.80006 0.99730 0.87803 1.21815 0.94264 0.88139 0.95263 1.44268 1.02687 1.06820 1.78900 1.19092 0.85003 0.93322 1.37905 0.90284 1.24782 0.97145 0.96805 1.01681 1.69911 1.21656 1.12219 1.53671 0.86074 0.82059 0.79615 0.77775 1.21525 1.21652 1.20641 1.21857 0.82874 0.91680 1.00684 1.23503 0.95202 0.93518 0.86985 0.92239 1.86235 1.67493 1.42572 1.41124 1.22276 0.97446 1.01537 0.96758 1.22578 0.93198 0.98235 0.87980 1.87880 1.77257 1.51414 1.13855 1.22849 0.93544 0.99485 0.87015 1.22017 0.97379 1.00164 0.96903 0.91933 0.91426 0.91776 0.75835 0.95745 0.93939 0.93720 0.92662 0.92902 0.77285 0.90218 0.89970 0.88629 0.92840 0.89279 0.90337 0.90778 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.39 37.16 0.31 -0.91 16 2 C -0.08 -0.92 0.63 -155.48 -0.10 -1.02 16 3 C 0.52 7.66 5.15 -10.99 -0.06 7.60 16 4 O -0.54 -9.85 13.48 5.55 0.07 -9.78 16 5 N -0.70 -10.44 4.94 -51.72 -0.26 -10.69 16 6 C 0.14 2.50 3.30 -65.78 -0.22 2.28 16 7 H 0.10 2.05 7.54 -51.93 -0.39 1.66 16 8 C 0.13 2.88 6.92 -2.53 -0.02 2.86 16 9 N -0.60 -15.33 3.39 -170.07 -0.58 -15.90 16 10 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 11 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 12 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 13 N -0.93 -26.68 10.31 55.49 0.57 -26.10 16 14 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.15 3.58 5.14 -3.07 -0.02 3.57 16 19 C 0.07 1.20 4.19 -24.90 -0.10 1.09 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 21 O -0.57 -8.73 12.15 -35.23 -0.43 -9.16 16 22 C -0.14 -1.45 4.86 -26.59 -0.13 -1.58 16 23 C 0.06 0.70 6.62 37.20 0.25 0.94 16 24 O -0.39 -5.24 10.77 -35.23 -0.38 -5.62 16 25 C 0.05 0.61 6.55 37.21 0.24 0.85 16 26 C -0.13 -1.40 4.56 -26.59 -0.12 -1.52 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 30 H 0.41 5.37 6.41 -40.82 -0.26 5.10 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 1.42 7.38 -51.93 -0.38 1.03 16 35 H 0.05 1.34 7.44 -51.93 -0.39 0.95 16 36 H 0.38 4.50 9.12 45.56 0.42 4.92 16 37 H 0.08 0.75 7.52 -51.93 -0.39 0.36 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.77 7.38 -51.93 -0.38 0.39 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.21 5.80 -51.93 -0.30 0.91 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -32.28 341.60 -7.32 -39.60 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.24 Total: 8.03 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.21 Total: 7.37 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.26 Total: -52.70 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.73 Total: -24.56 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.28 -7.32 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083860964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.157 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds