Wall clock time and date at job start Tue Mar 31 2020 04:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.54871 * 2 1 4 4 O 1.21283 * 120.00472 * 239.82531 * 3 2 1 5 5 N 1.34777 * 119.99538 * 59.81869 * 3 2 1 6 6 C 1.46499 * 119.99665 * 179.72653 * 5 3 2 7 7 H 1.09003 * 110.88828 * 31.39407 * 6 5 3 8 8 C 1.54916 * 111.00526 * 267.47216 * 6 5 3 9 9 N 1.47421 * 104.83435 * 204.91702 * 8 6 5 10 10 C 1.36940 * 125.65109 * 204.15554 * 9 8 6 11 11 H 1.07997 * 119.99699 * 359.97438 * 10 9 8 12 12 C 1.38809 * 120.00017 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47266 * 89.99647 * 14 12 10 16 16 H 1.48497 * 109.46993 * 210.00007 * 14 12 10 17 17 H 1.48498 * 109.47138 * 329.99557 * 14 12 10 18 18 C 1.47024 * 108.70119 * 24.12897 * 9 8 6 19 19 C 1.54320 * 107.27409 * 358.93990 * 18 9 8 20 20 H 1.08992 * 110.72587 * 219.44291 * 19 18 9 21 21 O 1.42896 * 110.87100 * 96.23854 * 19 18 9 22 22 C 1.53180 * 109.61674 * 120.22629 * 2 1 3 23 23 C 1.53088 * 109.16678 * 176.89096 * 22 2 1 24 24 O 1.42902 * 109.41339 * 302.38871 * 23 22 2 25 25 C 1.42910 * 114.09909 * 61.15704 * 24 23 22 26 26 C 1.53093 * 109.41433 * 298.84446 * 25 24 23 27 27 H 1.09005 * 109.46645 * 59.99521 * 1 2 3 28 28 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46550 * 300.00319 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 5 3 2 31 31 H 1.08996 * 110.36483 * 323.75950 * 8 6 5 32 32 H 1.09007 * 110.36437 * 86.07790 * 8 6 5 33 33 H 0.97001 * 119.99919 * 180.02562 * 13 12 10 34 34 H 1.09006 * 109.88273 * 239.52156 * 18 9 8 35 35 H 1.09002 * 109.88091 * 118.35858 * 18 9 8 36 36 H 0.96703 * 114.00258 * 66.39649 * 21 19 18 37 37 H 1.09003 * 109.51802 * 296.79605 * 22 2 1 38 38 H 1.08999 * 109.52163 * 56.98203 * 22 2 1 39 39 H 1.08997 * 109.48202 * 182.40879 * 23 22 2 40 40 H 1.08995 * 109.49413 * 62.37581 * 23 22 2 41 41 H 1.08995 * 109.48206 * 178.86043 * 25 24 23 42 42 H 1.08999 * 109.48589 * 58.82959 * 25 24 23 43 43 H 1.09006 * 109.51965 * 297.70320 * 26 25 24 44 44 H 1.09001 * 109.52151 * 177.51362 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0342 1.4201 0.0000 4 8 2.7347 1.8150 -0.9080 5 7 1.7067 2.2514 1.0090 6 6 2.2018 3.6302 1.0121 7 1 2.3159 4.0045 -0.0053 8 6 3.5324 3.7407 1.7977 9 7 3.5914 5.1442 2.2447 10 6 4.7320 5.8361 2.5540 11 1 5.6944 5.3519 2.4787 12 6 4.6511 7.1594 2.9651 13 7 3.4781 7.7494 3.0573 14 14 6.2069 8.1030 3.3876 15 1 6.7260 8.7731 2.1683 16 1 5.9011 9.1241 4.4216 17 1 7.2304 7.1618 3.9089 18 6 2.2229 5.6783 2.3030 19 6 1.2719 4.5532 1.8433 20 1 0.4715 4.9546 1.2219 21 8 0.7343 3.8508 2.9655 22 6 2.0443 -0.7264 1.2467 23 6 3.5731 -0.7884 1.1975 24 8 3.9833 -1.4478 -0.0021 25 6 3.5713 -0.7878 -1.2009 26 6 2.0424 -0.7256 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.1467 1.9356 1.7354 31 1 3.5230 3.0691 2.6561 32 1 4.3771 3.5140 1.1469 33 1 3.4217 8.6743 3.3443 34 1 2.1311 6.5364 1.6371 35 1 1.9828 5.9721 3.3248 36 1 0.1459 4.3835 3.5180 37 1 1.7302 -0.1850 2.1392 38 1 1.6392 -1.7380 1.2719 39 1 3.9424 -1.3418 2.0609 40 1 3.9789 0.2230 1.2132 41 1 3.9394 -1.3406 -2.0651 42 1 3.9769 0.2238 -1.2167 43 1 1.6374 -1.7373 -1.2731 44 1 1.7271 -0.1838 -2.1396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083860964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:26 Heat of formation + Delta-G solvation = -134.403337 kcal Electronic energy + Delta-G solvation = -26075.505548 eV Core-core repulsion = 22413.327981 eV Total energy + Delta-G solvation = -3662.177568 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95873 -40.09085 -38.83880 -36.48023 -35.93628 -35.39283 -33.56239 -32.01276 -30.32301 -29.41499 -28.72296 -26.53471 -24.66798 -24.57143 -23.19357 -22.26950 -21.62155 -20.50082 -19.15113 -18.33172 -17.77091 -17.07080 -16.98863 -16.91896 -16.62542 -16.12365 -15.80851 -15.61545 -15.46857 -15.02864 -14.75034 -14.54830 -14.38803 -13.98931 -13.56369 -13.40819 -13.22798 -13.19032 -12.93601 -12.90568 -12.80249 -12.74741 -12.31889 -12.23829 -12.13738 -11.96387 -11.89682 -11.53831 -11.44675 -10.90496 -10.78903 -10.71012 -10.33446 -10.06382 -8.97197 -7.90976 -5.26908 1.43907 1.45672 1.54194 1.59289 2.07227 2.47160 2.93794 3.16226 3.28231 3.47621 3.55679 3.67088 3.76999 3.81908 3.93979 4.03564 4.06222 4.23725 4.28657 4.47472 4.52507 4.62302 4.64015 4.66672 4.70087 4.78059 4.80260 4.87602 4.96358 4.99307 5.08402 5.09506 5.22377 5.29999 5.33690 5.43507 5.49629 5.62748 6.12229 6.22022 6.59225 6.86065 7.04530 7.26405 7.68477 8.31944 9.18821 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.004147 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.573057 B = 6750.137348 C = 7427.670957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C 0.514 3.486 4 O -0.579 6.579 5 N -0.693 5.693 6 C 0.151 3.849 7 H 0.088 0.912 8 C 0.135 3.865 9 N -0.621 5.621 10 C -0.249 4.249 11 H 0.075 0.925 12 C -0.057 4.057 13 N -0.947 5.947 14 Si 0.979 3.021 15 H -0.286 1.286 16 H -0.288 1.288 17 H -0.272 1.272 18 C 0.160 3.840 19 C 0.094 3.906 20 H 0.090 0.910 21 O -0.563 6.563 22 C -0.136 4.136 23 C 0.050 3.950 24 O -0.396 6.396 25 C 0.044 3.956 26 C -0.123 4.123 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.417 0.583 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.250 0.750 34 H 0.023 0.977 35 H 0.027 0.973 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.020 0.980 41 H 0.104 0.896 42 H 0.043 0.957 43 H 0.101 0.899 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 -18.004 -3.812 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.081 4.081 3 C 0.302 3.698 4 O -0.459 6.459 5 N -0.345 5.345 6 C 0.044 3.956 7 H 0.106 0.894 8 C 0.008 3.992 9 N -0.348 5.348 10 C -0.378 4.378 11 H 0.093 0.907 12 C -0.251 4.251 13 N -0.596 5.596 14 Si 0.807 3.193 15 H -0.213 1.213 16 H -0.214 1.214 17 H -0.197 1.197 18 C 0.034 3.966 19 C 0.033 3.967 20 H 0.107 0.893 21 O -0.371 6.371 22 C -0.174 4.174 23 C -0.026 4.026 24 O -0.315 6.315 25 C -0.032 4.032 26 C -0.161 4.161 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.256 0.744 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.249 0.751 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.122 0.878 42 H 0.062 0.938 43 H 0.120 0.880 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.797 -18.170 -4.610 21.152 hybrid contribution 0.514 1.861 0.752 2.072 sum -9.283 -16.310 -3.857 19.159 Atomic orbital electron populations 1.21852 0.89682 1.04639 1.03032 1.20950 0.99200 0.89450 0.98457 1.21279 0.79121 0.88483 0.80899 1.90648 1.39436 1.77998 1.37813 1.45632 1.52462 1.10712 1.25661 1.21906 0.93148 0.82263 0.98318 0.89391 1.21842 0.95794 0.86396 0.95163 1.44541 1.03077 1.08220 1.78925 1.19397 0.85988 0.94115 1.38272 0.90729 1.25580 1.00178 0.97543 1.01783 1.70107 1.23283 1.12126 1.54036 0.85083 0.78740 0.78156 0.77366 1.21267 1.21437 1.19749 1.21721 0.83239 0.93005 0.98607 1.23095 0.94583 0.91291 0.87704 0.89267 1.86197 1.67787 1.42369 1.40783 1.22292 0.95487 1.03076 0.96504 1.22706 0.95057 0.96689 0.88172 1.87862 1.77873 1.51444 1.14350 1.22856 0.95126 0.97781 0.87447 1.22025 0.95792 1.01573 0.96725 0.92334 0.88780 0.90935 0.74449 0.95691 0.95928 0.94086 0.95838 0.95447 0.75055 0.89140 0.87216 0.86844 0.96119 0.87780 0.93849 0.88019 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.39 71.98 0.60 -1.24 16 2 C -0.08 -1.53 0.63 -52.81 -0.03 -1.56 16 3 C 0.51 14.82 5.15 87.66 0.45 15.27 16 4 O -0.58 -21.60 13.48 -3.04 -0.04 -21.64 16 5 N -0.69 -19.70 4.94 -435.95 -2.15 -21.85 16 6 C 0.15 5.49 3.30 46.39 0.15 5.65 16 7 H 0.09 3.54 7.54 -2.39 -0.02 3.52 16 8 C 0.13 6.02 6.92 86.86 0.60 6.63 16 9 N -0.62 -32.72 3.39 -691.98 -2.35 -35.07 16 10 C -0.25 -14.40 10.28 84.03 0.86 -13.53 16 11 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 12 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 13 N -0.95 -55.80 10.31 21.65 0.22 -55.58 16 14 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 15 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 18 C 0.16 7.57 5.14 86.73 0.45 8.02 16 19 C 0.09 3.20 4.19 31.78 0.13 3.33 16 20 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 21 O -0.56 -15.94 12.15 -148.98 -1.81 -17.75 16 22 C -0.14 -2.34 4.86 30.68 0.15 -2.20 16 23 C 0.05 1.17 6.62 72.01 0.48 1.65 16 24 O -0.40 -10.40 10.77 -148.98 -1.60 -12.00 16 25 C 0.04 1.11 6.55 72.01 0.47 1.58 16 26 C -0.12 -2.47 4.56 30.69 0.14 -2.33 16 27 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 30 H 0.42 9.95 6.41 -92.71 -0.59 9.36 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 34 H 0.02 1.25 7.38 -2.38 -0.02 1.23 16 35 H 0.03 1.42 7.44 -2.39 -0.02 1.40 16 36 H 0.40 8.35 9.12 -74.05 -0.68 7.68 16 37 H 0.09 1.39 7.52 -2.39 -0.02 1.37 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.02 0.61 7.38 -2.39 -0.02 0.59 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.04 1.40 5.80 -2.39 -0.01 1.39 16 43 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.07 1.58 8.03 -2.39 -0.02 1.56 16 Total: -1.00 -72.89 341.60 -1.04 -73.94 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.26 Total: 23.31 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 4.92 Total: 18.46 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.28 Total: -112.50 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -3.45 Total: -51.40 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.89 -1.04 -73.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083860964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.468 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds