Wall clock time and date at job start Tue Mar 31 2020 04:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48492 * 109.46951 * 269.99231 * 3 2 1 5 5 H 1.48500 * 109.47275 * 29.99651 * 3 2 1 6 6 H 1.48502 * 109.46885 * 149.99280 * 3 2 1 7 7 C 1.38811 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99887 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00532 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.01566 * 33.60657 * 10 9 7 12 12 C 1.54266 * 110.06889 * 272.19170 * 10 9 7 13 13 C 1.54883 * 104.19667 * 264.29757 * 12 10 9 14 14 C 1.54894 * 102.75028 * 322.06184 * 13 12 10 15 15 H 1.09000 * 110.59873 * 279.20300 * 14 13 12 16 16 C 1.53002 * 110.48456 * 156.61800 * 14 13 12 17 17 N 1.46493 * 109.47129 * 70.22669 * 16 14 13 18 18 C 1.34778 * 119.99845 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99945 * 179.97438 * 18 17 16 21 21 H 1.08997 * 109.52168 * 305.12614 * 20 18 17 22 22 C 1.53136 * 109.57799 * 65.29620 * 20 18 17 23 23 O 1.43075 * 109.15053 * 175.24795 * 22 20 18 24 24 C 1.43080 * 113.59203 * 302.04275 * 23 22 20 25 25 C 1.53139 * 109.14586 * 57.95273 * 24 23 22 26 26 O 1.43075 * 109.15405 * 304.68551 * 25 24 23 27 27 C 1.53876 * 110.03412 * 155.00152 * 10 9 7 28 28 H 0.97000 * 120.00079 * 0.02562 * 1 2 3 29 29 H 0.97010 * 119.99374 * 0.02562 * 9 7 2 30 30 H 1.09004 * 110.48850 * 22.98089 * 12 10 9 31 31 H 1.09003 * 110.48635 * 145.62047 * 12 10 9 32 32 H 1.09005 * 110.76255 * 203.74395 * 13 12 10 33 33 H 1.09004 * 110.75594 * 80.37445 * 13 12 10 34 34 H 1.08995 * 109.47015 * 310.21981 * 16 14 13 35 35 H 1.09000 * 109.46585 * 190.22713 * 16 14 13 36 36 H 0.96997 * 120.00448 * 359.97438 * 17 16 14 37 37 H 1.09009 * 109.52503 * 295.14932 * 22 20 18 38 38 H 1.09004 * 109.52714 * 55.27567 * 22 20 18 39 39 H 1.09000 * 109.52104 * 298.05259 * 24 23 22 40 40 H 1.08997 * 109.52374 * 177.85700 * 24 23 22 41 41 H 1.09004 * 109.51891 * 184.78468 * 25 24 23 42 42 H 1.09003 * 109.52400 * 64.59014 * 25 24 23 43 43 H 1.08994 * 110.03239 * 0.04702 * 27 10 9 44 44 H 1.08999 * 110.02818 * 238.61410 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5603 -3.2203 -0.5662 12 6 4.3284 -2.9573 1.4490 13 6 5.7463 -2.4509 1.8121 14 6 6.5279 -2.6447 0.4890 15 1 6.8449 -3.6818 0.3793 16 6 7.7369 -1.7084 0.4391 17 7 8.7400 -2.1540 1.4092 18 6 9.8974 -1.4761 1.5415 19 8 10.1085 -0.4974 0.8570 20 6 10.9291 -1.9343 2.5399 21 1 10.4737 -2.0052 3.5277 22 6 11.4703 -3.3057 2.1260 23 8 12.5259 -3.6817 3.0156 24 6 13.6051 -2.7430 3.0529 25 6 13.0638 -1.3716 3.4668 26 8 12.0082 -0.9955 2.5772 27 6 5.5107 -2.2720 -0.6093 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 0.0014 30 1 3.5845 -2.5184 2.1140 31 1 4.2884 -4.0456 1.4958 32 1 6.1801 -3.0550 2.6091 33 1 5.7200 -1.3984 2.0946 34 1 7.4211 -0.6940 0.6828 35 1 8.1675 -1.7241 -0.5621 36 1 8.5713 -2.9370 1.9564 37 1 10.6700 -4.0439 2.1776 38 1 11.8528 -3.2538 1.1065 39 1 14.0603 -2.6720 2.0651 40 1 14.3507 -3.0738 3.7758 41 1 13.8641 -0.6334 3.4151 42 1 12.6802 -1.4238 4.4858 43 1 5.6447 -1.2315 -0.9047 44 1 5.6375 -2.9251 -1.4727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086647577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:32 Heat of formation + Delta-G solvation = -117.632939 kcal Electronic energy + Delta-G solvation = -24383.716500 eV Core-core repulsion = 20722.266151 eV Total energy + Delta-G solvation = -3661.450349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.85944 -39.39307 -38.22305 -36.48809 -35.07958 -33.46389 -32.29036 -30.97723 -29.43661 -28.48949 -27.53756 -25.61218 -24.21721 -22.83548 -22.26672 -20.87479 -20.01100 -19.36287 -17.97826 -17.54154 -17.45159 -16.98159 -16.52460 -15.97640 -15.91492 -15.36084 -15.04525 -14.88387 -14.44385 -14.12257 -13.92685 -13.56353 -13.27583 -13.09337 -12.81064 -12.71746 -12.38842 -12.10713 -11.88761 -11.39195 -11.34771 -11.11902 -10.92478 -10.80849 -10.66849 -10.49294 -10.40222 -10.37324 -10.05399 -9.92932 -9.68031 -9.57923 -9.26694 -8.90541 -7.25009 -5.76826 -3.11905 2.28067 2.45946 3.13806 3.38748 3.42186 3.46851 3.51493 3.99436 4.30869 4.38042 4.44964 4.58244 4.59776 4.66894 4.73954 4.82021 4.90165 4.94560 5.04135 5.21284 5.24221 5.38527 5.45474 5.54139 5.62047 5.68683 5.84224 5.93429 5.98240 6.05016 6.19225 6.20751 6.28156 6.36585 6.43222 6.50048 6.62403 6.78238 6.98083 7.21171 7.93772 8.01063 8.42941 9.21931 9.94778 10.14486 11.41568 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.002758 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.236937 B =10149.355008 C =10684.347811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.179 3.821 11 H 0.058 0.942 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.104 4.104 15 H 0.079 0.921 16 C 0.126 3.874 17 N -0.722 5.722 18 C 0.519 3.481 19 O -0.514 6.514 20 C 0.037 3.963 21 H 0.095 0.905 22 C 0.038 3.962 23 O -0.373 6.373 24 C 0.020 3.980 25 C 0.023 3.977 26 O -0.350 6.350 27 C -0.124 4.124 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.401 0.599 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.088 -9.271 7.064 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.070 3.930 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.153 4.153 14 C -0.123 4.123 15 H 0.097 0.903 16 C 0.004 3.996 17 N -0.375 5.375 18 C 0.302 3.698 19 O -0.388 6.388 20 C -0.025 4.025 21 H 0.113 0.887 22 C -0.040 4.040 23 O -0.292 6.292 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.268 6.268 27 C -0.163 4.163 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.981 -8.588 6.526 29.057 hybrid contribution 0.470 0.923 0.407 1.113 sum 27.451 -7.664 6.933 29.332 Atomic orbital electron populations 1.69701 1.05115 1.25803 1.57625 1.24673 0.95221 0.97194 1.02099 0.86575 0.79232 0.85037 0.77829 1.21078 1.21803 1.20303 1.19089 0.80714 0.94647 1.42835 0.89226 1.42914 1.03952 1.01920 1.90011 1.20767 0.90098 0.89182 0.92993 0.92421 1.23091 0.95911 0.99080 1.00547 1.22540 0.96240 1.01274 0.95257 1.22263 0.93838 0.98703 0.97514 0.90304 1.21577 0.87325 0.98805 0.91925 1.45943 1.17462 1.31939 1.42203 1.19885 0.82317 0.83850 0.83709 1.90759 1.77836 1.25613 1.44636 1.22598 0.89241 0.90767 0.99869 0.88716 1.23143 0.91622 0.94850 0.94355 1.88128 1.30182 1.46069 1.64775 1.23337 0.89849 0.89602 1.02871 1.23364 0.91032 0.97255 0.93779 1.88250 1.29245 1.44480 1.64849 1.22493 0.94823 1.01984 0.96973 0.93089 0.80663 0.90673 0.92833 0.92666 0.91508 0.90977 0.91302 0.76500 0.87005 0.91268 0.91722 0.87319 0.87078 0.91732 0.91226 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.24 -6.75 10.44 -15.06 -0.16 -6.90 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.75 -17.14 4.88 -52.34 -0.26 -17.39 16 10 C 0.18 3.24 3.55 -66.81 -0.24 3.00 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.15 -2.31 6.54 -25.08 -0.16 -2.48 16 13 C -0.12 -1.47 6.19 -24.74 -0.15 -1.63 16 14 C -0.10 -1.17 2.89 -88.96 -0.26 -1.43 16 15 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.13 1.46 4.96 -4.04 -0.02 1.44 16 17 N -0.72 -6.90 5.42 -60.30 -0.33 -7.23 16 18 C 0.52 6.18 7.18 -10.98 -0.08 6.10 16 19 O -0.51 -8.65 16.51 -14.26 -0.24 -8.88 16 20 C 0.04 0.34 3.25 -27.81 -0.09 0.25 16 21 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 22 C 0.04 0.28 6.30 37.23 0.23 0.51 16 23 O -0.37 -3.03 10.85 -48.80 -0.53 -3.56 16 24 C 0.02 0.12 7.05 37.23 0.26 0.39 16 25 C 0.02 0.16 7.05 37.23 0.26 0.42 16 26 O -0.35 -3.90 10.03 -62.50 -0.63 -4.53 16 27 C -0.12 -1.76 6.14 -25.62 -0.16 -1.92 16 28 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.36 8.25 5.38 -40.82 -0.22 8.03 16 30 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.97 7.97 -51.93 -0.41 0.56 16 34 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 2.62 8.38 -40.82 -0.34 2.27 16 37 H 0.11 0.56 8.08 -51.92 -0.42 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 1.07 7.31 -51.93 -0.38 0.69 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -35.37 354.35 -8.50 -43.86 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.27 Total: 5.63 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.65 Total: -2.23 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.19 Total: -53.17 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.39 Total: -16.97 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.37 -8.50 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086647577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.768 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds