Wall clock time and date at job start Tue Mar 31 2020 04:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48492 * 109.46951 * 269.99231 * 3 2 1 5 5 H 1.48500 * 109.47275 * 29.99651 * 3 2 1 6 6 H 1.48502 * 109.46885 * 149.99280 * 3 2 1 7 7 C 1.38811 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99887 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00532 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.01566 * 33.60657 * 10 9 7 12 12 C 1.54266 * 110.06889 * 272.19170 * 10 9 7 13 13 C 1.54883 * 104.19667 * 264.29757 * 12 10 9 14 14 C 1.54894 * 102.75028 * 322.06184 * 13 12 10 15 15 H 1.09000 * 110.59873 * 279.20300 * 14 13 12 16 16 C 1.53002 * 110.48456 * 156.61800 * 14 13 12 17 17 N 1.46493 * 109.47129 * 70.22669 * 16 14 13 18 18 C 1.34778 * 119.99845 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99945 * 179.97438 * 18 17 16 21 21 H 1.08997 * 109.52168 * 305.12614 * 20 18 17 22 22 C 1.53136 * 109.57799 * 65.29620 * 20 18 17 23 23 O 1.43075 * 109.15053 * 175.24795 * 22 20 18 24 24 C 1.43080 * 113.59203 * 302.04275 * 23 22 20 25 25 C 1.53139 * 109.14586 * 57.95273 * 24 23 22 26 26 O 1.43075 * 109.15405 * 304.68551 * 25 24 23 27 27 C 1.53876 * 110.03412 * 155.00152 * 10 9 7 28 28 H 0.97000 * 120.00079 * 0.02562 * 1 2 3 29 29 H 0.97010 * 119.99374 * 0.02562 * 9 7 2 30 30 H 1.09004 * 110.48850 * 22.98089 * 12 10 9 31 31 H 1.09003 * 110.48635 * 145.62047 * 12 10 9 32 32 H 1.09005 * 110.76255 * 203.74395 * 13 12 10 33 33 H 1.09004 * 110.75594 * 80.37445 * 13 12 10 34 34 H 1.08995 * 109.47015 * 310.21981 * 16 14 13 35 35 H 1.09000 * 109.46585 * 190.22713 * 16 14 13 36 36 H 0.96997 * 120.00448 * 359.97438 * 17 16 14 37 37 H 1.09009 * 109.52503 * 295.14932 * 22 20 18 38 38 H 1.09004 * 109.52714 * 55.27567 * 22 20 18 39 39 H 1.09000 * 109.52104 * 298.05259 * 24 23 22 40 40 H 1.08997 * 109.52374 * 177.85700 * 24 23 22 41 41 H 1.09004 * 109.51891 * 184.78468 * 25 24 23 42 42 H 1.09003 * 109.52400 * 64.59014 * 25 24 23 43 43 H 1.08994 * 110.03239 * 0.04702 * 27 10 9 44 44 H 1.08999 * 110.02818 * 238.61410 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5603 -3.2203 -0.5662 12 6 4.3284 -2.9573 1.4490 13 6 5.7463 -2.4509 1.8121 14 6 6.5279 -2.6447 0.4890 15 1 6.8449 -3.6818 0.3793 16 6 7.7369 -1.7084 0.4391 17 7 8.7400 -2.1540 1.4092 18 6 9.8974 -1.4761 1.5415 19 8 10.1085 -0.4974 0.8570 20 6 10.9291 -1.9343 2.5399 21 1 10.4737 -2.0052 3.5277 22 6 11.4703 -3.3057 2.1260 23 8 12.5259 -3.6817 3.0156 24 6 13.6051 -2.7430 3.0529 25 6 13.0638 -1.3716 3.4668 26 8 12.0082 -0.9955 2.5772 27 6 5.5107 -2.2720 -0.6093 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 0.0014 30 1 3.5845 -2.5184 2.1140 31 1 4.2884 -4.0456 1.4958 32 1 6.1801 -3.0550 2.6091 33 1 5.7200 -1.3984 2.0946 34 1 7.4211 -0.6940 0.6828 35 1 8.1675 -1.7241 -0.5621 36 1 8.5713 -2.9370 1.9564 37 1 10.6700 -4.0439 2.1776 38 1 11.8528 -3.2538 1.1065 39 1 14.0603 -2.6720 2.0651 40 1 14.3507 -3.0738 3.7758 41 1 13.8641 -0.6334 3.4151 42 1 12.6802 -1.4238 4.4858 43 1 5.6447 -1.2315 -0.9047 44 1 5.6375 -2.9251 -1.4727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086647577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:30 Heat of formation + Delta-G solvation = -144.333089 kcal Electronic energy + Delta-G solvation = -24384.874306 eV Core-core repulsion = 20722.266151 eV Total energy + Delta-G solvation = -3662.608154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58882 -40.24425 -39.39625 -37.13189 -36.36222 -35.04426 -33.24625 -32.60320 -30.48478 -29.36046 -28.76576 -26.35311 -25.35124 -24.60919 -22.88026 -21.75976 -21.05313 -20.83072 -19.55020 -18.71770 -18.16471 -17.64012 -17.16912 -16.92971 -16.59610 -16.50047 -16.25999 -16.06814 -15.68620 -15.39509 -14.81134 -14.65860 -14.42732 -14.36445 -14.08939 -13.96161 -13.36864 -13.21216 -13.09637 -12.64644 -12.54969 -12.23760 -12.17300 -11.94033 -11.88620 -11.76581 -11.71063 -11.63039 -11.54120 -11.39960 -10.95016 -10.87670 -10.32243 -10.15668 -9.26278 -8.02354 -5.33517 1.36491 1.38138 1.40546 1.45244 1.70714 2.47229 2.63295 2.88091 3.28476 3.41291 3.58975 3.59732 3.72818 3.79256 3.83927 3.95089 4.05565 4.12206 4.24065 4.42036 4.46656 4.51200 4.54041 4.60647 4.67107 4.77198 4.77711 4.79343 4.82070 4.93311 5.06547 5.14041 5.23619 5.29605 5.44702 5.53967 5.61928 5.81687 5.83995 5.87022 6.23574 6.45744 7.09972 7.12077 7.89542 8.05627 9.19545 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.002758 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.236937 B =10149.355008 C =10684.347811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.256 1.256 7 C -0.223 4.223 8 H 0.058 0.942 9 N -0.750 5.750 10 C 0.164 3.836 11 H 0.045 0.955 12 C -0.141 4.141 13 C -0.109 4.109 14 C -0.084 4.084 15 H 0.115 0.885 16 C 0.132 3.868 17 N -0.703 5.703 18 C 0.517 3.483 19 O -0.572 6.572 20 C 0.040 3.960 21 H 0.116 0.884 22 C 0.042 3.958 23 O -0.383 6.383 24 C 0.018 3.982 25 C 0.018 3.982 26 O -0.388 6.388 27 C -0.119 4.119 28 H 0.256 0.744 29 H 0.362 0.638 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.420 0.580 37 H 0.140 0.860 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.122 -10.772 8.079 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.181 1.181 7 C -0.354 4.354 8 H 0.076 0.924 9 N -0.393 5.393 10 C 0.056 3.944 11 H 0.063 0.937 12 C -0.181 4.181 13 C -0.146 4.146 14 C -0.103 4.103 15 H 0.133 0.867 16 C 0.008 3.992 17 N -0.357 5.357 18 C 0.303 3.697 19 O -0.450 6.450 20 C -0.022 4.022 21 H 0.133 0.867 22 C -0.036 4.036 23 O -0.302 6.302 24 C -0.058 4.058 25 C -0.058 4.058 26 O -0.307 6.307 27 C -0.158 4.158 28 H 0.065 0.935 29 H 0.195 0.805 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.258 0.742 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 30.069 -10.170 7.572 32.633 hybrid contribution -0.472 1.267 0.100 1.355 sum 29.598 -8.903 7.671 31.845 Atomic orbital electron populations 1.69874 1.07014 1.26453 1.60315 1.25444 0.96045 1.00976 1.03284 0.85476 0.78527 0.80176 0.77980 1.20627 1.22466 1.18097 1.19070 0.82876 0.93268 1.40163 0.92385 1.42973 1.02309 1.04003 1.90060 1.21130 0.91657 0.86765 0.94834 0.93718 1.22941 0.97040 1.00416 0.97737 1.22503 0.94440 1.00551 0.97140 1.22139 0.92515 1.00467 0.95190 0.86662 1.21378 0.87744 0.97701 0.92365 1.45737 1.16313 1.32045 1.41612 1.20427 0.82957 0.82979 0.83349 1.90734 1.79055 1.28214 1.47004 1.22669 0.88494 0.91213 0.99783 0.86690 1.23205 0.92281 0.94345 0.93728 1.88116 1.30591 1.46620 1.64853 1.23489 0.89811 0.88993 1.03540 1.23599 0.90511 0.98136 0.93579 1.88198 1.30492 1.45884 1.66115 1.22411 0.92986 1.01908 0.98521 0.93497 0.80489 0.94300 0.90329 0.89010 0.93596 0.93432 0.91391 0.74234 0.84203 0.92192 0.92021 0.84809 0.85752 0.90726 0.92464 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.90 13.97 21.65 0.30 -63.60 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.95 46.71 27.74 68.60 1.90 48.62 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.26 -11.53 6.52 99.48 0.65 -10.88 16 7 C -0.22 -12.66 10.44 84.03 0.88 -11.78 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.75 -34.48 4.88 -319.52 -1.56 -36.04 16 10 C 0.16 5.75 3.55 45.72 0.16 5.91 16 11 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 12 C -0.14 -4.23 6.54 31.67 0.21 -4.02 16 13 C -0.11 -2.42 6.19 31.88 0.20 -2.22 16 14 C -0.08 -1.58 2.89 -9.72 -0.03 -1.61 16 15 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 16 C 0.13 2.70 4.96 86.38 0.43 3.13 16 17 N -0.70 -11.25 5.42 -463.06 -2.51 -13.76 16 18 C 0.52 11.44 7.18 87.66 0.63 12.07 16 19 O -0.57 -19.12 16.51 15.90 0.26 -18.86 16 20 C 0.04 0.65 3.25 29.90 0.10 0.75 16 21 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 22 C 0.04 0.50 6.30 72.03 0.45 0.95 16 23 O -0.38 -5.11 10.85 -136.00 -1.48 -6.59 16 24 C 0.02 0.18 7.05 72.03 0.51 0.69 16 25 C 0.02 0.21 7.05 72.03 0.51 0.72 16 26 O -0.39 -8.19 10.03 -122.90 -1.23 -9.42 16 27 C -0.12 -3.11 6.14 31.32 0.19 -2.92 16 28 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.36 16.32 5.38 -92.70 -0.50 15.82 16 30 H 0.04 1.44 8.04 -2.38 -0.02 1.43 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.05 1.24 7.97 -2.39 -0.02 1.22 16 34 H 0.05 1.24 8.02 -2.39 -0.02 1.22 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.42 3.50 8.38 -92.71 -0.78 2.72 16 37 H 0.14 0.80 8.08 -2.38 -0.02 0.78 16 38 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 1.66 7.31 -2.39 -0.02 1.64 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -80.94 354.35 0.06 -80.88 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.33 Total: 20.59 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.70 Total: -1.83 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -3.76 Total: -113.39 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -2.45 Total: -34.87 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.90 Total: 48.62 kcal Total: -80.94 0.06 -80.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086647577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.452 kcal (2) G-P(sol) polarization free energy of solvation -80.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds