Wall clock time and date at job start Tue Mar 31 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00412 * 2 1 4 4 H 1.48503 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47263 * 300.00102 * 3 2 1 6 6 H 1.48500 * 109.46912 * 60.00072 * 3 2 1 7 7 C 1.38811 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00834 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99816 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01993 * 34.93483 * 10 9 7 12 12 C 1.53876 * 110.03274 * 273.54725 * 10 9 7 13 13 C 1.54267 * 106.59870 * 240.71671 * 12 10 9 14 14 C 1.54891 * 104.19324 * 336.39035 * 13 12 10 15 15 H 1.09001 * 110.91358 * 279.55140 * 14 13 12 16 16 C 1.52997 * 110.75763 * 156.25900 * 14 13 12 17 17 N 1.46505 * 109.47165 * 71.66479 * 16 14 13 18 18 C 1.34778 * 120.00015 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99889 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00083 * 180.02562 * 18 17 16 21 21 H 1.09003 * 109.52583 * 55.00308 * 20 18 17 22 22 C 1.53145 * 109.52457 * 294.86968 * 20 18 17 23 23 O 1.43079 * 109.15075 * 184.78699 * 22 20 18 24 24 C 1.43067 * 113.59154 * 57.95360 * 23 22 20 25 25 C 1.53149 * 109.15421 * 302.04542 * 24 23 22 26 26 O 1.43081 * 109.52352 * 175.13252 * 20 18 17 27 27 C 1.54261 * 110.03258 * 156.37854 * 10 9 7 28 28 H 0.96999 * 119.99596 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00369 * 359.97438 * 9 7 2 30 30 H 1.08995 * 110.03160 * 359.97438 * 12 10 9 31 31 H 1.08998 * 110.03319 * 121.42949 * 12 10 9 32 32 H 1.09004 * 110.48597 * 95.06674 * 13 12 10 33 33 H 1.08994 * 110.48679 * 217.71200 * 13 12 10 34 34 H 1.09000 * 109.47412 * 191.66880 * 16 14 13 35 35 H 1.09005 * 109.46985 * 311.67079 * 16 14 13 36 36 H 0.97000 * 120.00161 * 0.02562 * 17 16 14 37 37 H 1.08998 * 109.52210 * 304.68712 * 22 20 18 38 38 H 1.08995 * 109.52054 * 64.88248 * 22 20 18 39 39 H 1.08998 * 109.52667 * 61.95063 * 24 23 22 40 40 H 1.09007 * 109.52337 * 182.07945 * 24 23 22 41 41 H 1.08995 * 109.52380 * 175.21838 * 25 24 23 42 42 H 1.09001 * 109.52142 * 295.34775 * 25 24 23 43 43 H 1.09000 * 110.48928 * 261.57243 * 27 10 9 44 44 H 1.09001 * 110.48691 * 24.08270 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9715 -3.5603 0.5870 12 6 2.3988 -4.0686 -1.4424 13 6 1.7083 -5.4261 -1.6881 14 6 1.5275 -6.0225 -0.2701 15 1 2.4530 -6.4791 0.0808 16 6 0.3832 -7.0378 -0.2507 17 7 0.7940 -8.2503 -0.9631 18 6 -0.0589 -9.2879 -1.0749 19 8 -1.1667 -9.2176 -0.5861 20 6 0.3638 -10.5353 -1.8071 21 1 1.2888 -10.9161 -1.3741 22 6 0.5875 -10.2093 -3.2867 23 8 0.8791 -11.4179 -3.9947 24 6 -0.1465 -12.4091 -3.8823 25 6 -0.3702 -12.7351 -2.4027 26 8 -0.6612 -11.5271 -1.6934 27 6 1.1720 -4.7784 0.5813 28 1 -0.4849 0.8401 -0.0004 29 1 0.3554 -2.3881 0.0005 30 1 2.0190 -3.3247 -2.1426 31 1 3.4779 -4.1727 -1.5559 32 1 0.7399 -5.2803 -2.1670 33 1 2.3420 -6.0720 -2.2957 34 1 0.1371 -7.2884 0.7811 35 1 -0.4918 -6.6085 -0.7389 36 1 1.6798 -8.3064 -1.3543 37 1 -0.3126 -9.7535 -3.6993 38 1 1.4247 -9.5184 -3.3849 39 1 -1.0712 -12.0272 -4.3150 40 1 0.1588 -13.3110 -4.4130 41 1 -1.2075 -13.4260 -2.3045 42 1 0.5294 -13.1920 -1.9904 43 1 1.4144 -4.9517 1.6297 44 1 0.1171 -4.5270 0.4711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086647578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:36 Heat of formation + Delta-G solvation = -122.176434 kcal Electronic energy + Delta-G solvation = -24176.382482 eV Core-core repulsion = 20514.735112 eV Total energy + Delta-G solvation = -3661.647369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.82362 -39.33114 -38.07960 -36.45448 -35.00284 -33.45917 -32.26599 -30.71584 -29.28373 -28.41894 -27.18344 -25.54025 -24.17418 -23.08744 -22.23623 -20.85904 -19.97514 -19.21691 -17.94674 -17.43758 -17.09972 -16.92488 -16.44750 -16.04766 -15.75378 -15.26793 -15.17216 -14.67323 -14.61408 -13.90877 -13.80983 -13.40018 -13.36473 -13.20926 -12.77485 -12.60372 -12.22340 -12.06169 -11.61345 -11.34336 -11.29143 -11.07642 -10.82641 -10.77007 -10.63288 -10.56102 -10.35058 -10.10848 -10.03407 -9.82091 -9.65905 -9.62164 -9.22478 -8.89683 -6.94303 -5.76599 -3.05107 2.31611 2.48706 3.17965 3.42807 3.48399 3.50733 3.54720 4.02688 4.34074 4.40743 4.48716 4.58656 4.61160 4.71447 4.82351 4.86800 4.94481 5.05015 5.09193 5.24174 5.27816 5.47764 5.53692 5.65287 5.70069 5.86152 5.95974 6.02010 6.05566 6.14504 6.26261 6.30496 6.40808 6.44383 6.45740 6.62020 6.69618 6.88570 7.13829 7.24929 7.71464 7.97215 8.42648 9.53337 10.12639 10.46419 11.46130 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.002357 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.613213 B =11874.925913 C =12139.245297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.105 4.105 15 H 0.079 0.921 16 C 0.128 3.872 17 N -0.722 5.722 18 C 0.518 3.482 19 O -0.514 6.514 20 C 0.038 3.962 21 H 0.094 0.906 22 C 0.037 3.963 23 O -0.373 6.373 24 C 0.020 3.980 25 C 0.023 3.977 26 O -0.350 6.350 27 C -0.118 4.118 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -26.240 -6.421 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.098 0.902 16 C 0.005 3.995 17 N -0.376 5.376 18 C 0.302 3.698 19 O -0.389 6.389 20 C -0.024 4.024 21 H 0.112 0.888 22 C -0.041 4.041 23 O -0.292 6.292 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.268 6.268 27 C -0.157 4.157 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.651 -26.021 -6.034 26.842 hybrid contribution 0.601 0.864 -0.243 1.080 sum 3.252 -25.157 -6.277 26.131 Atomic orbital electron populations 1.69670 1.05095 1.25519 1.57820 1.24750 0.95513 0.97701 1.03134 0.86139 0.78771 0.84244 0.77173 1.20590 1.21915 1.21907 1.19298 0.91011 0.84198 1.42415 0.91182 1.42555 1.05708 0.99775 1.88343 1.20816 0.94117 0.85999 0.92605 0.93353 1.22996 0.98707 0.95782 1.01223 1.22404 1.00659 0.97108 0.95075 1.22360 0.97232 0.95113 0.97715 0.90241 1.21525 0.97944 0.83153 0.96859 1.45963 1.17803 1.15959 1.57825 1.19880 0.85413 0.83760 0.80741 1.90760 1.20433 1.81096 1.46570 1.22595 0.93031 0.90024 0.96777 0.88812 1.23160 1.03496 0.87768 0.89627 1.88126 1.43866 1.25138 1.72032 1.23333 0.92483 0.93117 0.96765 1.23354 1.02975 0.87226 0.91833 1.88250 1.42084 1.24338 1.72148 1.22608 1.01297 0.93479 0.98342 0.93572 0.78239 0.90909 0.93344 0.91768 0.92888 0.91268 0.90916 0.76532 0.91166 0.86937 0.91697 0.87347 0.87108 0.91808 0.91835 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.78 5.04 -52.34 -0.26 -18.05 16 10 C 0.18 3.32 3.55 -66.81 -0.24 3.08 16 11 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 12 C -0.15 -2.44 6.59 -25.61 -0.17 -2.61 16 13 C -0.11 -1.47 6.20 -25.07 -0.16 -1.62 16 14 C -0.10 -1.24 2.91 -88.63 -0.26 -1.50 16 15 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.13 1.49 5.11 -4.04 -0.02 1.47 16 17 N -0.72 -6.96 5.44 -60.29 -0.33 -7.29 16 18 C 0.52 6.17 7.18 -10.99 -0.08 6.09 16 19 O -0.51 -8.63 16.51 -14.27 -0.24 -8.86 16 20 C 0.04 0.35 3.25 -27.81 -0.09 0.26 16 21 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 22 C 0.04 0.29 6.29 37.23 0.23 0.53 16 23 O -0.37 -3.17 10.85 -48.75 -0.53 -3.69 16 24 C 0.02 0.13 7.05 37.23 0.26 0.39 16 25 C 0.02 0.16 7.05 37.23 0.26 0.42 16 26 O -0.35 -3.88 10.03 -62.49 -0.63 -4.50 16 27 C -0.12 -1.82 5.97 -25.08 -0.15 -1.97 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.38 10.09 7.54 -40.82 -0.31 9.78 16 30 H 0.07 1.43 7.92 -51.93 -0.41 1.01 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 36 H 0.40 2.67 8.39 -40.82 -0.34 2.33 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 0.64 8.06 -51.93 -0.42 0.22 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.20 7.64 -51.93 -0.40 0.80 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -34.37 357.68 -8.86 -43.23 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.32 Total: 6.57 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.65 Total: -2.67 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.13 Total: -52.76 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.39 Total: -17.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.37 -8.86 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086647578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.951 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds