Wall clock time and date at job start Tue Mar 31 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00412 * 2 1 4 4 H 1.48503 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47263 * 300.00102 * 3 2 1 6 6 H 1.48500 * 109.46912 * 60.00072 * 3 2 1 7 7 C 1.38811 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00834 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99816 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01993 * 34.93483 * 10 9 7 12 12 C 1.53876 * 110.03274 * 273.54725 * 10 9 7 13 13 C 1.54267 * 106.59870 * 240.71671 * 12 10 9 14 14 C 1.54891 * 104.19324 * 336.39035 * 13 12 10 15 15 H 1.09001 * 110.91358 * 279.55140 * 14 13 12 16 16 C 1.52997 * 110.75763 * 156.25900 * 14 13 12 17 17 N 1.46505 * 109.47165 * 71.66479 * 16 14 13 18 18 C 1.34778 * 120.00015 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99889 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00083 * 180.02562 * 18 17 16 21 21 H 1.09003 * 109.52583 * 55.00308 * 20 18 17 22 22 C 1.53145 * 109.52457 * 294.86968 * 20 18 17 23 23 O 1.43079 * 109.15075 * 184.78699 * 22 20 18 24 24 C 1.43067 * 113.59154 * 57.95360 * 23 22 20 25 25 C 1.53149 * 109.15421 * 302.04542 * 24 23 22 26 26 O 1.43081 * 109.52352 * 175.13252 * 20 18 17 27 27 C 1.54261 * 110.03258 * 156.37854 * 10 9 7 28 28 H 0.96999 * 119.99596 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00369 * 359.97438 * 9 7 2 30 30 H 1.08995 * 110.03160 * 359.97438 * 12 10 9 31 31 H 1.08998 * 110.03319 * 121.42949 * 12 10 9 32 32 H 1.09004 * 110.48597 * 95.06674 * 13 12 10 33 33 H 1.08994 * 110.48679 * 217.71200 * 13 12 10 34 34 H 1.09000 * 109.47412 * 191.66880 * 16 14 13 35 35 H 1.09005 * 109.46985 * 311.67079 * 16 14 13 36 36 H 0.97000 * 120.00161 * 0.02562 * 17 16 14 37 37 H 1.08998 * 109.52210 * 304.68712 * 22 20 18 38 38 H 1.08995 * 109.52054 * 64.88248 * 22 20 18 39 39 H 1.08998 * 109.52667 * 61.95063 * 24 23 22 40 40 H 1.09007 * 109.52337 * 182.07945 * 24 23 22 41 41 H 1.08995 * 109.52380 * 175.21838 * 25 24 23 42 42 H 1.09001 * 109.52142 * 295.34775 * 25 24 23 43 43 H 1.09000 * 110.48928 * 261.57243 * 27 10 9 44 44 H 1.09001 * 110.48691 * 24.08270 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9715 -3.5603 0.5870 12 6 2.3988 -4.0686 -1.4424 13 6 1.7083 -5.4261 -1.6881 14 6 1.5275 -6.0225 -0.2701 15 1 2.4530 -6.4791 0.0808 16 6 0.3832 -7.0378 -0.2507 17 7 0.7940 -8.2503 -0.9631 18 6 -0.0589 -9.2879 -1.0749 19 8 -1.1667 -9.2176 -0.5861 20 6 0.3638 -10.5353 -1.8071 21 1 1.2888 -10.9161 -1.3741 22 6 0.5875 -10.2093 -3.2867 23 8 0.8791 -11.4179 -3.9947 24 6 -0.1465 -12.4091 -3.8823 25 6 -0.3702 -12.7351 -2.4027 26 8 -0.6612 -11.5271 -1.6934 27 6 1.1720 -4.7784 0.5813 28 1 -0.4849 0.8401 -0.0004 29 1 0.3554 -2.3881 0.0005 30 1 2.0190 -3.3247 -2.1426 31 1 3.4779 -4.1727 -1.5559 32 1 0.7399 -5.2803 -2.1670 33 1 2.3420 -6.0720 -2.2957 34 1 0.1371 -7.2884 0.7811 35 1 -0.4918 -6.6085 -0.7389 36 1 1.6798 -8.3064 -1.3543 37 1 -0.3126 -9.7535 -3.6993 38 1 1.4247 -9.5184 -3.3849 39 1 -1.0712 -12.0272 -4.3150 40 1 0.1588 -13.3110 -4.4130 41 1 -1.2075 -13.4260 -2.3045 42 1 0.5294 -13.1920 -1.9904 43 1 1.4144 -4.9517 1.6297 44 1 0.1171 -4.5270 0.4711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086647578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:35 Heat of formation + Delta-G solvation = -147.433684 kcal Electronic energy + Delta-G solvation = -24177.477718 eV Core-core repulsion = 20514.735112 eV Total energy + Delta-G solvation = -3662.742606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57396 -40.20129 -39.30675 -37.11988 -36.31261 -35.05295 -33.12096 -32.32623 -30.38972 -29.28983 -28.55113 -26.34782 -25.50220 -24.70271 -22.87411 -21.78244 -21.04193 -20.65518 -19.15542 -18.70263 -18.15258 -17.59858 -17.10527 -16.99020 -16.66836 -16.42681 -16.26063 -15.87543 -15.69628 -15.33314 -15.09133 -14.58250 -14.36243 -14.14300 -14.05931 -13.54530 -13.31350 -13.14143 -13.04277 -12.64725 -12.60100 -12.39895 -12.09343 -11.97342 -11.86807 -11.70921 -11.66661 -11.59450 -11.53642 -11.25286 -10.91622 -10.86361 -10.31283 -10.14550 -8.96602 -7.93261 -5.20884 1.42098 1.46950 1.47538 1.57494 1.71264 2.56968 2.63746 2.89319 3.38889 3.42155 3.59938 3.69728 3.79657 3.83502 3.85314 3.95794 4.12815 4.24444 4.26972 4.41145 4.47747 4.53843 4.54925 4.61472 4.71061 4.78262 4.80204 4.80491 4.81592 4.93734 5.09250 5.13571 5.26602 5.30691 5.47676 5.53604 5.56968 5.70323 5.85137 5.87406 6.30530 6.47158 7.13466 7.35005 8.15071 8.35511 9.30752 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.002357 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.613213 B =11874.925913 C =12139.245297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.738 5.738 10 C 0.162 3.838 11 H 0.046 0.954 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.083 4.083 15 H 0.111 0.889 16 C 0.135 3.865 17 N -0.703 5.703 18 C 0.517 3.483 19 O -0.572 6.572 20 C 0.042 3.958 21 H 0.121 0.879 22 C 0.040 3.960 23 O -0.383 6.383 24 C 0.016 3.984 25 C 0.019 3.981 26 O -0.387 6.387 27 C -0.115 4.115 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.420 0.580 37 H 0.055 0.945 38 H 0.139 0.861 39 H 0.059 0.941 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -28.330 -7.147 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.378 5.378 10 C 0.054 3.946 11 H 0.064 0.936 12 C -0.181 4.181 13 C -0.143 4.143 14 C -0.102 4.102 15 H 0.129 0.871 16 C 0.011 3.989 17 N -0.357 5.357 18 C 0.303 3.697 19 O -0.450 6.450 20 C -0.019 4.019 21 H 0.138 0.862 22 C -0.038 4.038 23 O -0.301 6.301 24 C -0.060 4.060 25 C -0.057 4.057 26 O -0.306 6.306 27 C -0.154 4.154 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.258 0.742 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.303 -28.160 -6.785 29.448 hybrid contribution -0.171 1.421 -0.015 1.431 sum 5.132 -26.739 -6.800 28.064 Atomic orbital electron populations 1.69830 1.06650 1.25794 1.60106 1.25563 0.96363 1.01123 1.04311 0.85101 0.78338 0.80030 0.76499 1.18858 1.22288 1.22287 1.19685 0.91420 0.85354 1.40088 0.90595 1.42796 1.05312 1.01170 1.88498 1.21160 0.94115 0.84867 0.94445 0.93609 1.22800 1.00079 0.96977 0.98212 1.22356 1.00353 0.95530 0.96105 1.22204 0.98345 0.93461 0.96188 0.87098 1.21282 0.97219 0.83763 0.96620 1.45738 1.18381 1.14678 1.56898 1.20438 0.84645 0.84696 0.79947 1.90737 1.22906 1.82219 1.49128 1.22648 0.93368 0.88562 0.97348 0.86183 1.23208 1.03968 0.88121 0.88469 1.88113 1.44549 1.25474 1.72013 1.23503 0.92061 0.93655 0.96774 1.23590 1.04279 0.86083 0.91753 1.88201 1.43409 1.25855 1.73160 1.22518 0.99407 0.94031 0.99484 0.94210 0.79808 0.94460 0.91502 0.93069 0.88906 0.91831 0.92923 0.74237 0.92631 0.84341 0.92307 0.84736 0.85720 0.90432 0.90929 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.23 -12.93 9.96 84.03 0.84 -12.09 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -37.03 5.04 -319.51 -1.61 -38.64 16 10 C 0.16 6.06 3.55 45.71 0.16 6.23 16 11 H 0.05 1.73 8.09 -2.39 -0.02 1.71 16 12 C -0.14 -4.47 6.59 31.32 0.21 -4.26 16 13 C -0.11 -2.41 6.20 31.67 0.20 -2.22 16 14 C -0.08 -1.73 2.91 -9.50 -0.03 -1.76 16 15 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.13 2.93 5.11 86.38 0.44 3.38 16 17 N -0.70 -11.74 5.44 -463.04 -2.52 -14.26 16 18 C 0.52 11.66 7.18 87.66 0.63 12.29 16 19 O -0.57 -19.38 16.51 15.89 0.26 -19.12 16 20 C 0.04 0.69 3.25 29.89 0.10 0.79 16 21 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 22 C 0.04 0.54 6.29 72.03 0.45 0.99 16 23 O -0.38 -5.51 10.85 -136.05 -1.48 -6.99 16 24 C 0.02 0.18 7.05 72.03 0.51 0.68 16 25 C 0.02 0.22 7.05 72.03 0.51 0.73 16 26 O -0.39 -8.17 10.03 -122.92 -1.23 -9.40 16 27 C -0.12 -3.46 5.97 31.67 0.19 -3.27 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.37 20.24 7.54 -92.71 -0.70 19.54 16 30 H 0.04 1.45 7.92 -2.39 -0.02 1.43 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.33 7.93 -2.38 -0.02 1.31 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.39 7.99 -2.38 -0.02 1.37 16 36 H 0.42 3.78 8.39 -92.71 -0.78 3.00 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.14 1.05 8.06 -2.39 -0.02 1.03 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 1.79 7.64 -2.39 -0.02 1.78 16 Total: -1.00 -77.67 357.68 -0.08 -77.74 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.48 Total: 25.10 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.67 Total: -2.79 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.85 Total: -113.03 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -2.45 Total: -35.51 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -77.67 -0.08 -77.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086647578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.693 kcal (2) G-P(sol) polarization free energy of solvation -77.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds