Wall clock time and date at job start Tue Mar 31 2020 04:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99527 * 2 1 4 4 H 1.48500 * 109.47214 * 273.00411 * 3 2 1 5 5 H 1.48499 * 109.47277 * 33.00882 * 3 2 1 6 6 H 1.48503 * 109.46657 * 153.01054 * 3 2 1 7 7 C 1.38807 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00244 * 339.46945 * 7 2 1 9 9 N 1.36942 * 119.99880 * 159.47314 * 7 2 1 10 10 C 1.46926 * 120.63063 * 332.42519 * 9 7 2 11 11 C 1.53192 * 108.77295 * 233.88094 * 10 9 7 12 12 C 1.53040 * 109.31543 * 305.36565 * 11 10 9 13 13 H 1.09006 * 109.46036 * 181.38690 * 12 11 10 14 14 N 1.46494 * 109.45733 * 301.34253 * 12 11 10 15 15 C 1.34774 * 120.00473 * 275.06909 * 14 12 11 16 16 O 1.21280 * 119.99540 * 359.97438 * 15 14 12 17 17 C 1.50693 * 120.00505 * 179.97438 * 15 14 12 18 18 O 1.42907 * 109.47367 * 179.97438 * 17 15 14 19 19 C 1.42902 * 113.99812 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.46603 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49604 * 243.61993 * 20 19 18 22 22 C 1.53000 * 60.00229 * 252.51302 * 21 20 19 23 23 C 1.53039 * 109.53902 * 61.36259 * 12 11 10 24 24 H 1.09008 * 109.52101 * 58.60225 * 23 12 11 25 25 O 1.42894 * 109.49845 * 178.68510 * 23 12 11 26 26 C 1.46924 * 120.62968 * 152.70010 * 9 7 2 27 27 H 0.96999 * 120.00261 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.58351 * 353.66692 * 10 9 7 29 29 H 1.08994 * 109.58658 * 114.09625 * 10 9 7 30 30 H 1.09000 * 109.49889 * 185.40555 * 11 10 9 31 31 H 1.09005 * 109.52436 * 65.33621 * 11 10 9 32 32 H 0.97002 * 119.99866 * 95.06423 * 14 12 11 33 33 H 1.08997 * 109.47454 * 300.00002 * 17 15 14 34 34 H 1.09004 * 109.47299 * 60.00226 * 17 15 14 35 35 H 1.09000 * 109.47267 * 300.00099 * 19 18 17 36 36 H 1.09000 * 109.46934 * 60.00581 * 19 18 17 37 37 H 1.08997 * 115.55447 * 29.33599 * 20 19 18 38 38 H 1.08999 * 117.50547 * 0.02562 * 21 20 19 39 39 H 1.09008 * 117.49555 * 145.02575 * 21 20 19 40 40 H 1.08999 * 117.49900 * 252.50992 * 22 21 20 41 41 H 1.09005 * 117.51426 * 107.48264 * 22 21 20 42 42 H 0.96693 * 114.00328 * 179.84366 * 25 23 12 43 43 H 1.09000 * 109.59189 * 245.90180 * 26 9 7 44 44 H 1.08998 * 109.58703 * 6.19253 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4340 2.0832 -1.3981 5 1 1.4808 2.6335 0.7627 6 1 3.5781 1.4227 0.6354 7 6 2.0103 -1.2021 -0.0005 8 1 1.5218 -2.1078 0.3270 9 7 3.3145 -1.2395 -0.4164 10 6 3.8189 -0.2594 -1.3878 11 6 4.4602 -1.0108 -2.5587 12 6 5.5256 -1.9695 -2.0221 13 1 6.0007 -2.4876 -2.8553 14 7 6.5354 -1.2109 -1.2799 15 6 7.5641 -0.6376 -1.9353 16 8 7.6541 -0.7502 -3.1395 17 6 8.6026 0.1432 -1.1719 18 8 9.5826 0.6482 -2.0811 19 6 10.6191 1.4075 -1.4557 20 6 11.6064 1.8947 -2.5182 21 6 13.0441 1.3778 -2.4365 22 6 12.7302 2.8280 -2.0632 23 6 4.8711 -2.9932 -1.0917 24 1 4.1025 -3.5415 -1.6365 25 8 5.8615 -3.9065 -0.6153 26 6 4.2344 -2.2642 0.0958 27 1 -0.4850 0.8400 0.0004 28 1 2.9930 0.3507 -1.7536 29 1 4.5635 0.3779 -0.9109 30 1 4.9231 -0.2965 -3.2396 31 1 3.6957 -1.5773 -3.0905 32 1 6.4636 -1.1212 -0.3168 33 1 8.1242 0.9746 -0.6542 34 1 9.0850 -0.5089 -0.4438 35 1 10.1829 2.2653 -0.9439 36 1 11.1429 0.7813 -0.7335 37 1 11.1860 2.0595 -3.5102 38 1 13.2866 0.6903 -1.6261 39 1 13.5699 1.2022 -3.3751 40 1 13.0495 3.6064 -2.7562 41 1 12.7660 3.0951 -1.0070 42 1 5.5170 -4.5834 -0.0169 43 1 5.0130 -1.7905 0.6937 44 1 3.6832 -2.9755 0.7109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099702221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:38 Heat of formation + Delta-G solvation = -75.177763 kcal Electronic energy + Delta-G solvation = -24924.491796 eV Core-core repulsion = 21264.882442 eV Total energy + Delta-G solvation = -3659.609354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07471 -38.74123 -37.90452 -36.49690 -35.68489 -34.16756 -32.01308 -30.70912 -29.46840 -28.55408 -26.36921 -25.17216 -22.75255 -22.70901 -22.06541 -21.18722 -20.70795 -19.08583 -17.49330 -17.29907 -16.92464 -16.52246 -16.42828 -15.81479 -15.45327 -15.08029 -14.74236 -14.58831 -14.32149 -13.96172 -13.82315 -13.63776 -12.78226 -12.63554 -12.53305 -12.51213 -12.24722 -11.87852 -11.86094 -11.58503 -11.37107 -11.27007 -11.20162 -10.78146 -10.56485 -10.35464 -10.13280 -10.00638 -9.77478 -9.75717 -9.58170 -9.57388 -8.85049 -8.65823 -7.11332 -6.05313 -3.43660 2.77817 2.79594 3.26194 3.40467 3.42675 3.45221 3.86459 4.26684 4.43458 4.50331 4.56361 4.75897 4.83571 4.85526 4.98179 5.00631 5.06639 5.16614 5.19666 5.23230 5.29552 5.35255 5.41876 5.51918 5.55453 5.66969 5.74627 5.76764 5.89553 5.97579 6.16148 6.30757 6.32880 6.41804 6.56757 6.64676 6.78304 6.90905 7.69008 7.73717 7.87155 8.21050 8.40321 8.80138 9.59661 9.94471 11.10104 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003646 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.110947 B = 7678.671652 C = 8678.649354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.086 0.914 9 N -0.601 5.601 10 C 0.126 3.874 11 C -0.146 4.146 12 C 0.167 3.833 13 H 0.086 0.914 14 N -0.709 5.709 15 C 0.515 3.485 16 O -0.526 6.526 17 C 0.044 3.956 18 O -0.359 6.359 19 C 0.091 3.909 20 C -0.152 4.152 21 C -0.177 4.177 22 C -0.174 4.174 23 C 0.076 3.924 24 H 0.072 0.928 25 O -0.569 6.569 26 C 0.122 3.878 27 H 0.264 0.736 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.376 0.624 43 H 0.027 0.973 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.623 0.229 0.062 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.395 4.395 8 H 0.104 0.896 9 N -0.326 5.326 10 C 0.001 3.999 11 C -0.186 4.186 12 C 0.063 3.937 13 H 0.104 0.896 14 N -0.362 5.362 15 C 0.299 3.701 16 O -0.402 6.402 17 C -0.036 4.036 18 O -0.277 6.277 19 C 0.014 3.986 20 C -0.170 4.170 21 C -0.214 4.214 22 C -0.211 4.211 23 C 0.015 3.985 24 H 0.090 0.910 25 O -0.374 6.374 26 C -0.005 4.005 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.237 0.763 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.223 0.777 43 H 0.044 0.956 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.900 0.567 -1.366 20.952 hybrid contribution -0.073 0.785 1.171 1.412 sum 20.827 1.353 -0.195 20.871 Atomic orbital electron populations 1.69829 1.05740 1.26748 1.52334 1.25264 0.95207 0.97641 0.99123 0.86945 0.79899 0.84618 0.77122 1.21501 1.23044 1.19678 1.18875 0.84659 0.94854 1.41074 0.89594 1.44284 1.08568 1.33005 1.46740 1.21352 0.97279 0.92046 0.89233 1.22424 0.97606 0.99240 0.99379 1.20823 0.88058 0.90821 0.94014 0.89635 1.45855 1.25126 1.53817 1.11438 1.20092 0.81970 0.79768 0.88239 1.90703 1.75741 1.59590 1.14172 1.22202 0.90543 0.98357 0.92465 1.88006 1.36377 1.70744 1.32606 1.22067 0.88174 0.94367 0.93982 1.22113 0.89551 1.04163 1.01181 1.23073 0.98141 0.96778 1.03421 1.22980 1.02252 0.93673 1.02222 1.22708 0.89569 0.89763 0.96444 0.90995 1.86476 1.37700 1.45233 1.67986 1.21561 0.92988 0.92428 0.93567 0.92598 0.90631 0.95519 0.91303 0.90343 0.76325 0.90285 0.90335 0.92652 0.93028 0.86609 0.88667 0.88561 0.88366 0.88662 0.77713 0.95559 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.97 55.49 0.78 -26.14 16 2 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 3 Si 0.88 21.72 24.35 -169.99 -4.14 17.58 16 4 H -0.29 -6.93 6.62 56.52 0.37 -6.56 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.45 6.63 56.52 0.37 -6.07 16 7 C -0.27 -7.06 10.03 -15.06 -0.15 -7.21 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -13.23 2.77 -172.33 -0.48 -13.70 16 10 C 0.13 2.65 3.95 -3.71 -0.01 2.64 16 11 C -0.15 -2.66 5.77 -26.61 -0.15 -2.81 16 12 C 0.17 2.78 2.47 -67.89 -0.17 2.61 16 13 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 14 N -0.71 -10.83 4.15 -53.77 -0.22 -11.06 16 15 C 0.51 8.27 7.87 -10.99 -0.09 8.18 16 16 O -0.53 -10.55 16.16 -14.35 -0.23 -10.78 16 17 C 0.04 0.55 6.42 36.00 0.23 0.78 16 18 O -0.36 -5.00 9.88 -55.14 -0.54 -5.55 16 19 C 0.09 0.91 6.22 37.16 0.23 1.14 16 20 C -0.15 -1.44 6.06 -90.62 -0.55 -1.99 16 21 C -0.18 -1.39 10.18 -26.73 -0.27 -1.66 16 22 C -0.17 -1.25 10.25 -26.73 -0.27 -1.53 16 23 C 0.08 1.18 3.36 -26.61 -0.09 1.09 16 24 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 25 O -0.57 -7.70 13.21 -35.23 -0.47 -8.16 16 26 C 0.12 2.12 5.84 -3.71 -0.02 2.10 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.08 1.77 4.49 -51.93 -0.23 1.54 16 29 H 0.03 0.56 6.68 -51.93 -0.35 0.21 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.40 5.54 6.87 -40.82 -0.28 5.26 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.38 3.52 9.08 45.56 0.41 3.94 16 43 H 0.03 0.44 6.64 -51.93 -0.34 0.09 16 44 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -33.51 351.46 -7.68 -41.19 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.26 Total: 7.34 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.41 Total: 4.00 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.07 Total: -50.90 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -1.24 Total: -24.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.51 -7.68 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099702221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.992 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds