Wall clock time and date at job start Tue Mar 31 2020 04:15:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86800 * 119.99892 * 2 1
4 4 H 1.48503 * 109.47189 * 274.91038 * 3 2 1
5 5 H 1.48506 * 109.47114 * 34.91212 * 3 2 1
6 6 H 1.48502 * 109.46855 * 154.91217 * 3 2 1
7 7 C 1.38805 * 119.99947 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00446 * 339.74776 * 7 2 1
9 9 N 1.36939 * 120.00250 * 159.74409 * 7 2 1
10 10 C 1.47200 * 120.81597 * 152.90192 * 9 7 2
11 11 C 1.53196 * 108.85514 * 126.34857 * 10 9 7
12 12 C 1.53033 * 109.31618 * 54.64745 * 11 10 9
13 13 H 1.09003 * 109.46327 * 178.61573 * 12 11 10
14 14 N 1.46503 * 109.46066 * 58.65486 * 12 11 10
15 15 C 1.34774 * 119.99530 * 84.93374 * 14 12 11
16 16 O 1.21276 * 120.00572 * 359.97438 * 15 14 12
17 17 C 1.50701 * 119.99826 * 180.02562 * 15 14 12
18 18 O 1.42898 * 109.47284 * 179.97438 * 17 15 14
19 19 C 1.42902 * 114.00219 * 180.02562 * 18 17 15
20 20 C 1.53004 * 109.47234 * 180.02562 * 19 18 17
21 21 C 1.52998 * 117.49410 * 243.74619 * 20 19 18
22 22 C 1.52997 * 117.49713 * 175.08686 * 20 19 18
23 23 C 1.53039 * 109.53853 * 298.63730 * 12 11 10
24 24 H 1.08998 * 109.49672 * 301.40999 * 23 12 11
25 25 O 1.42900 * 109.49905 * 181.31480 * 23 12 11
26 26 C 1.46936 * 120.62682 * 332.76292 * 9 7 2
27 27 H 0.96994 * 119.99979 * 359.97438 * 1 2 3
28 28 H 1.08997 * 109.53570 * 6.53973 * 10 9 7
29 29 H 1.09008 * 109.55971 * 246.16310 * 10 9 7
30 30 H 1.08999 * 109.49289 * 294.69741 * 11 10 9
31 31 H 1.08997 * 109.49630 * 174.60472 * 11 10 9
32 32 H 0.96996 * 120.00100 * 264.92959 * 14 12 11
33 33 H 1.08998 * 109.47483 * 299.99841 * 17 15 14
34 34 H 1.09000 * 109.47068 * 60.00219 * 17 15 14
35 35 H 1.09004 * 109.46665 * 299.99996 * 19 18 17
36 36 H 1.09000 * 109.47176 * 60.00170 * 19 18 17
37 37 H 1.09000 * 115.55177 * 29.41400 * 20 19 18
38 38 H 1.09002 * 117.50135 * 0.02562 * 21 20 19
39 39 H 1.09005 * 117.49852 * 145.01963 * 21 20 19
40 40 H 1.09002 * 117.49910 * 214.97669 * 22 20 19
41 41 H 1.08997 * 117.50236 * 359.97438 * 22 20 19
42 42 H 0.96703 * 114.00207 * 180.15768 * 25 23 12
43 43 H 1.08996 * 109.58385 * 113.81393 * 26 9 7
44 44 H 1.08993 * 109.58606 * 353.53350 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3940 2.1064 -1.3950
5 1 1.5034 2.6205 0.8013
6 1 3.5959 1.4124 0.5937
7 6 2.0103 -1.2021 -0.0005
8 1 1.5204 -2.1087 0.3228
9 7 3.3162 -1.2386 -0.4111
10 6 4.2380 -2.2674 0.0974
11 6 4.8837 -2.9852 -1.0921
12 6 5.5413 -1.9524 -2.0102
13 1 6.0227 -2.4625 -2.8446
14 7 6.5447 -1.1973 -1.2557
15 6 7.7940 -1.6845 -1.1212
16 8 8.0875 -2.7483 -1.6243
17 6 8.8261 -0.9080 -0.3447
18 8 10.0616 -1.6261 -0.3442
19 6 11.1131 -0.9731 0.3698
20 6 12.3812 -1.8266 0.3036
21 6 12.9249 -2.3870 1.6194
22 6 13.6577 -1.2436 0.9131
23 6 4.4767 -0.9921 -2.5455
24 1 3.7166 -1.5562 -3.0860
25 8 5.0867 -0.0470 -3.4268
26 6 3.8264 -0.2517 -1.3726
27 1 -0.4850 0.8400 0.0004
28 1 3.6845 -2.9864 0.7014
29 1 5.0118 -1.7965 0.7039
30 1 4.1198 -3.5305 -1.6462
31 1 5.6387 -3.6829 -0.7297
32 1 6.3098 -0.3466 -0.8531
33 1 8.9724 0.0672 -0.8090
34 1 8.4837 -0.7742 0.6815
35 1 11.3072 0.0008 -0.0797
36 1 10.8178 -0.8405 1.4106
37 1 12.4860 -2.4446 -0.5881
38 1 12.3790 -2.1479 2.5321
39 1 13.3877 -3.3736 1.5932
40 1 14.6024 -1.4784 0.4225
41 1 13.5943 -0.2519 1.3608
42 1 4.4696 0.5959 -3.8024
43 1 4.5665 0.3836 -0.8861
44 1 3.0030 0.3613 -1.7388
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001099702222.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:15:41
Heat of formation + Delta-G solvation = -75.200815 kcal
Electronic energy + Delta-G solvation = -24924.381902 eV
Core-core repulsion = 21264.771548 eV
Total energy + Delta-G solvation = -3659.610354 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.07744 -38.74389 -37.90964 -36.50120 -35.55355 -34.21861 -32.14733 -30.61117
-29.45865 -28.54291 -26.36765 -25.18554 -23.00804 -22.71319 -21.79497 -21.20229
-20.73110 -19.01606 -17.49105 -17.22946 -16.97232 -16.68363 -16.41646 -15.92177
-15.41378 -15.08204 -14.75685 -14.41866 -14.31701 -13.94357 -13.80729 -13.53820
-13.04156 -12.77028 -12.55511 -12.39089 -12.32651 -11.87537 -11.82630 -11.59599
-11.37119 -11.12343 -11.01851 -10.78243 -10.57195 -10.56568 -10.38314 -9.90978
-9.77628 -9.75333 -9.58920 -9.53554 -8.81458 -8.73387 -7.12877 -6.07073
-3.44674 2.77023 2.78809 3.16831 3.35246 3.37840 3.44701 3.86135
4.29141 4.39083 4.50091 4.55779 4.75367 4.82745 4.84667 4.98019
5.00562 5.06625 5.14305 5.19051 5.25376 5.29286 5.34422 5.44578
5.53356 5.55738 5.64941 5.74339 5.76693 5.88818 5.96643 6.16031
6.28639 6.30583 6.41018 6.54759 6.63684 6.78326 6.90216 7.68547
7.73383 7.89974 8.20602 8.39350 8.78858 9.57433 9.93372 11.08579
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.022518 B = 0.003318 C = 0.003222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.169574 B = 8437.078015 C = 8687.225845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.023 3.977
3 Si 0.884 3.116
4 H -0.290 1.290
5 H -0.302 1.302
6 H -0.271 1.271
7 C -0.262 4.262
8 H 0.089 0.911
9 N -0.601 5.601
10 C 0.148 3.852
11 C -0.146 4.146
12 C 0.167 3.833
13 H 0.086 0.914
14 N -0.709 5.709
15 C 0.516 3.484
16 O -0.527 6.527
17 C 0.044 3.956
18 O -0.359 6.359
19 C 0.091 3.909
20 C -0.152 4.152
21 C -0.177 4.177
22 C -0.175 4.175
23 C 0.076 3.924
24 H 0.074 0.926
25 O -0.571 6.571
26 C 0.099 3.901
27 H 0.264 0.736
28 H 0.067 0.933
29 H 0.025 0.975
30 H 0.076 0.924
31 H 0.070 0.930
32 H 0.401 0.599
33 H 0.079 0.921
34 H 0.079 0.921
35 H 0.055 0.945
36 H 0.052 0.948
37 H 0.116 0.884
38 H 0.095 0.905
39 H 0.096 0.904
40 H 0.098 0.902
41 H 0.095 0.905
42 H 0.377 0.623
43 H 0.030 0.970
44 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.334 0.796 -0.007 20.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.177 4.177
3 Si 0.714 3.286
4 H -0.218 1.218
5 H -0.230 1.230
6 H -0.196 1.196
7 C -0.390 4.390
8 H 0.106 0.894
9 N -0.326 5.326
10 C 0.023 3.977
11 C -0.186 4.186
12 C 0.063 3.937
13 H 0.104 0.896
14 N -0.362 5.362
15 C 0.300 3.700
16 O -0.403 6.403
17 C -0.036 4.036
18 O -0.277 6.277
19 C 0.014 3.986
20 C -0.170 4.170
21 C -0.214 4.214
22 C -0.212 4.212
23 C 0.015 3.985
24 H 0.092 0.908
25 O -0.375 6.375
26 C -0.028 4.028
27 H 0.074 0.926
28 H 0.086 0.914
29 H 0.043 0.957
30 H 0.094 0.906
31 H 0.089 0.911
32 H 0.237 0.763
33 H 0.096 0.904
34 H 0.097 0.903
35 H 0.073 0.927
36 H 0.070 0.930
37 H 0.134 0.866
38 H 0.114 0.886
39 H 0.115 0.885
40 H 0.116 0.884
41 H 0.113 0.887
42 H 0.224 0.776
43 H 0.047 0.953
44 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 20.937 -0.422 -0.287 20.943
hybrid contribution -0.361 2.099 0.222 2.141
sum 20.576 1.677 -0.065 20.644
Atomic orbital electron populations
1.69830 1.05696 1.26652 1.52549 1.25309 0.95269 0.97593 0.99483
0.86944 0.80060 0.84715 0.76835 1.21819 1.22997 1.19584 1.18936
0.84541 0.94911 1.40608 0.89371 1.44359 1.08739 1.32716 1.46785
1.20997 0.92187 0.91241 0.93296 1.22407 0.99983 0.97532 0.98711
1.20831 0.87391 0.91652 0.93871 0.89632 1.45873 1.10047 1.24974
1.55322 1.20080 0.82683 0.86303 0.80906 1.90700 1.79756 1.22178
1.47645 1.22203 0.85504 0.95345 1.00535 1.88002 1.18492 1.46300
1.74936 1.22068 0.86205 0.94737 0.95583 1.22112 0.92978 1.03264
0.98660 1.23088 1.03883 0.98446 0.95972 1.22989 0.95609 0.98501
1.04057 1.22767 0.93854 0.90669 0.91197 0.90818 1.86443 1.39816
1.46838 1.64452 1.22010 0.97581 0.92861 0.90347 0.92634 0.91435
0.95728 0.90552 0.91141 0.76349 0.90357 0.90275 0.92724 0.92964
0.86640 0.88612 0.88542 0.88386 0.88670 0.77593 0.95251 0.90528
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.64 13.97 55.49 0.78 -25.87 16
2 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16
3 Si 0.88 20.96 24.35 -169.99 -4.14 16.82 16
4 H -0.29 -6.55 6.70 56.52 0.38 -6.17 16
5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16
6 H -0.27 -6.19 6.46 56.52 0.36 -5.83 16
7 C -0.26 -6.92 10.06 -15.06 -0.15 -7.07 16
8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16
9 N -0.60 -13.21 2.79 -172.09 -0.48 -13.69 16
10 C 0.15 2.77 6.27 -3.56 -0.02 2.75 16
11 C -0.15 -2.44 5.77 -26.61 -0.15 -2.59 16
12 C 0.17 2.77 2.47 -67.89 -0.17 2.60 16
13 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16
14 N -0.71 -10.83 4.15 -53.77 -0.22 -11.05 16
15 C 0.52 8.11 7.87 -10.99 -0.09 8.02 16
16 O -0.53 -10.31 16.16 -14.35 -0.23 -10.54 16
17 C 0.04 0.53 6.42 36.01 0.23 0.76 16
18 O -0.36 -4.88 9.88 -55.14 -0.54 -5.43 16
19 C 0.09 0.89 6.22 37.16 0.23 1.12 16
20 C -0.15 -1.40 6.05 -90.62 -0.55 -1.95 16
21 C -0.18 -1.38 10.18 -26.69 -0.27 -1.66 16
22 C -0.17 -1.22 10.25 -26.69 -0.27 -1.49 16
23 C 0.08 1.29 3.36 -26.61 -0.09 1.20 16
24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
25 O -0.57 -8.75 13.21 -35.23 -0.47 -9.22 16
26 C 0.10 1.94 3.51 -3.71 -0.01 1.93 16
27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
28 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16
29 H 0.02 0.45 7.74 -51.92 -0.40 0.04 16
30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16
31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
32 H 0.40 5.75 6.87 -40.82 -0.28 5.47 16
33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
36 H 0.05 0.45 7.88 -51.93 -0.41 0.04 16
37 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16
38 H 0.10 0.70 8.03 -51.93 -0.42 0.29 16
39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
42 H 0.38 4.50 9.08 45.56 0.41 4.91 16
43 H 0.03 0.57 5.48 -51.93 -0.28 0.28 16
44 H 0.08 1.65 4.48 -51.93 -0.23 1.42 16
LS Contribution 351.31 15.07 5.29 5.29
Total: -1.00 -32.81 351.31 -7.68 -40.49
By element:
Atomic # 1 Polarization: 15.30 SS G_CDS: -6.26 Total: 9.04 kcal
Atomic # 6 Polarization: 5.56 SS G_CDS: -1.41 Total: 4.15 kcal
Atomic # 7 Polarization: -50.68 SS G_CDS: 0.07 Total: -50.61 kcal
Atomic # 8 Polarization: -23.95 SS G_CDS: -1.24 Total: -25.19 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -32.81 -7.68 -40.49 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099702222.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.709 kcal
(2) G-P(sol) polarization free energy of solvation -32.808 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds