Wall clock time and date at job start Tue Mar 31 2020 04:15:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86800 * 119.99892 * 2 1
4 4 H 1.48503 * 109.47189 * 274.91038 * 3 2 1
5 5 H 1.48506 * 109.47114 * 34.91212 * 3 2 1
6 6 H 1.48502 * 109.46855 * 154.91217 * 3 2 1
7 7 C 1.38805 * 119.99947 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00446 * 339.74776 * 7 2 1
9 9 N 1.36939 * 120.00250 * 159.74409 * 7 2 1
10 10 C 1.47200 * 120.81597 * 152.90192 * 9 7 2
11 11 C 1.53196 * 108.85514 * 126.34857 * 10 9 7
12 12 C 1.53033 * 109.31618 * 54.64745 * 11 10 9
13 13 H 1.09003 * 109.46327 * 178.61573 * 12 11 10
14 14 N 1.46503 * 109.46066 * 58.65486 * 12 11 10
15 15 C 1.34774 * 119.99530 * 84.93374 * 14 12 11
16 16 O 1.21276 * 120.00572 * 359.97438 * 15 14 12
17 17 C 1.50701 * 119.99826 * 180.02562 * 15 14 12
18 18 O 1.42898 * 109.47284 * 179.97438 * 17 15 14
19 19 C 1.42902 * 114.00219 * 180.02562 * 18 17 15
20 20 C 1.53004 * 109.47234 * 180.02562 * 19 18 17
21 21 C 1.52998 * 117.49410 * 243.74619 * 20 19 18
22 22 C 1.52997 * 117.49713 * 175.08686 * 20 19 18
23 23 C 1.53039 * 109.53853 * 298.63730 * 12 11 10
24 24 H 1.08998 * 109.49672 * 301.40999 * 23 12 11
25 25 O 1.42900 * 109.49905 * 181.31480 * 23 12 11
26 26 C 1.46936 * 120.62682 * 332.76292 * 9 7 2
27 27 H 0.96994 * 119.99979 * 359.97438 * 1 2 3
28 28 H 1.08997 * 109.53570 * 6.53973 * 10 9 7
29 29 H 1.09008 * 109.55971 * 246.16310 * 10 9 7
30 30 H 1.08999 * 109.49289 * 294.69741 * 11 10 9
31 31 H 1.08997 * 109.49630 * 174.60472 * 11 10 9
32 32 H 0.96996 * 120.00100 * 264.92959 * 14 12 11
33 33 H 1.08998 * 109.47483 * 299.99841 * 17 15 14
34 34 H 1.09000 * 109.47068 * 60.00219 * 17 15 14
35 35 H 1.09004 * 109.46665 * 299.99996 * 19 18 17
36 36 H 1.09000 * 109.47176 * 60.00170 * 19 18 17
37 37 H 1.09000 * 115.55177 * 29.41400 * 20 19 18
38 38 H 1.09002 * 117.50135 * 0.02562 * 21 20 19
39 39 H 1.09005 * 117.49852 * 145.01963 * 21 20 19
40 40 H 1.09002 * 117.49910 * 214.97669 * 22 20 19
41 41 H 1.08997 * 117.50236 * 359.97438 * 22 20 19
42 42 H 0.96703 * 114.00207 * 180.15768 * 25 23 12
43 43 H 1.08996 * 109.58385 * 113.81393 * 26 9 7
44 44 H 1.08993 * 109.58606 * 353.53350 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3940 2.1064 -1.3950
5 1 1.5034 2.6205 0.8013
6 1 3.5959 1.4124 0.5937
7 6 2.0103 -1.2021 -0.0005
8 1 1.5204 -2.1087 0.3228
9 7 3.3162 -1.2386 -0.4111
10 6 4.2380 -2.2674 0.0974
11 6 4.8837 -2.9852 -1.0921
12 6 5.5413 -1.9524 -2.0102
13 1 6.0227 -2.4625 -2.8446
14 7 6.5447 -1.1973 -1.2557
15 6 7.7940 -1.6845 -1.1212
16 8 8.0875 -2.7483 -1.6243
17 6 8.8261 -0.9080 -0.3447
18 8 10.0616 -1.6261 -0.3442
19 6 11.1131 -0.9731 0.3698
20 6 12.3812 -1.8266 0.3036
21 6 12.9249 -2.3870 1.6194
22 6 13.6577 -1.2436 0.9131
23 6 4.4767 -0.9921 -2.5455
24 1 3.7166 -1.5562 -3.0860
25 8 5.0867 -0.0470 -3.4268
26 6 3.8264 -0.2517 -1.3726
27 1 -0.4850 0.8400 0.0004
28 1 3.6845 -2.9864 0.7014
29 1 5.0118 -1.7965 0.7039
30 1 4.1198 -3.5305 -1.6462
31 1 5.6387 -3.6829 -0.7297
32 1 6.3098 -0.3466 -0.8531
33 1 8.9724 0.0672 -0.8090
34 1 8.4837 -0.7742 0.6815
35 1 11.3072 0.0008 -0.0797
36 1 10.8178 -0.8405 1.4106
37 1 12.4860 -2.4446 -0.5881
38 1 12.3790 -2.1479 2.5321
39 1 13.3877 -3.3736 1.5932
40 1 14.6024 -1.4784 0.4225
41 1 13.5943 -0.2519 1.3608
42 1 4.4696 0.5959 -3.8024
43 1 4.5665 0.3836 -0.8861
44 1 3.0030 0.3613 -1.7388
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099702222.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:15:41
Heat of formation + Delta-G solvation = -100.061699 kcal
Electronic energy + Delta-G solvation = -24925.459950 eV
Core-core repulsion = 21264.771548 eV
Total energy + Delta-G solvation = -3660.688403 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.36228 -39.82270 -38.95443 -37.29831 -36.99047 -35.71181 -33.91455 -32.19621
-30.84510 -29.55881 -27.45129 -26.71163 -24.55459 -23.38790 -23.25414 -22.27791
-21.59685 -20.46309 -18.97797 -18.48842 -18.30459 -17.82542 -17.31750 -17.24981
-16.74675 -16.18266 -16.03939 -15.79728 -15.48847 -15.25780 -14.97331 -14.85285
-14.68011 -14.12778 -13.96768 -13.50350 -13.43467 -13.28886 -13.21065 -12.72395
-12.60807 -12.38885 -12.23303 -12.08277 -11.98957 -11.66284 -11.40904 -11.38550
-11.26815 -11.14958 -10.81595 -10.65155 -10.51897 -10.10538 -8.97521 -8.16129
-5.50931 1.29948 1.44275 1.52652 1.58998 1.78323 2.41216 2.74512
2.89488 3.05083 3.14748 3.34637 3.69050 3.81336 3.91605 3.93541
3.96299 4.10522 4.14067 4.19394 4.21131 4.26553 4.34145 4.34945
4.52441 4.53203 4.68496 4.69786 4.77885 4.84569 4.88756 4.93854
5.01293 5.04965 5.21700 5.23887 5.24573 5.47057 5.83249 6.07736
6.12325 6.52901 6.72309 6.88959 7.21318 7.57695 7.96800 9.03267
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.022518 B = 0.003318 C = 0.003222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.169574 B = 8437.078015 C = 8687.225845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.957 5.957
2 C -0.037 4.037
3 Si 0.949 3.051
4 H -0.270 1.270
5 H -0.316 1.316
6 H -0.251 1.251
7 C -0.251 4.251
8 H 0.052 0.948
9 N -0.611 5.611
10 C 0.149 3.851
11 C -0.135 4.135
12 C 0.170 3.830
13 H 0.078 0.922
14 N -0.702 5.702
15 C 0.512 3.488
16 O -0.572 6.572
17 C 0.047 3.953
18 O -0.393 6.393
19 C 0.088 3.912
20 C -0.175 4.175
21 C -0.181 4.181
22 C -0.157 4.157
23 C 0.092 3.908
24 H 0.068 0.932
25 O -0.569 6.569
26 C 0.097 3.903
27 H 0.262 0.738
28 H 0.058 0.942
29 H 0.041 0.959
30 H 0.073 0.927
31 H 0.075 0.925
32 H 0.409 0.591
33 H 0.107 0.893
34 H 0.105 0.895
35 H 0.070 0.930
36 H 0.066 0.934
37 H 0.096 0.904
38 H 0.101 0.899
39 H 0.097 0.903
40 H 0.106 0.894
41 H 0.109 0.891
42 H 0.394 0.606
43 H 0.047 0.953
44 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.009 2.611 0.167 23.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.602 5.602
2 C -0.232 4.232
3 Si 0.777 3.223
4 H -0.196 1.196
5 H -0.245 1.245
6 H -0.175 1.175
7 C -0.380 4.380
8 H 0.069 0.931
9 N -0.337 5.337
10 C 0.024 3.976
11 C -0.175 4.175
12 C 0.065 3.935
13 H 0.096 0.904
14 N -0.356 5.356
15 C 0.299 3.701
16 O -0.451 6.451
17 C -0.032 4.032
18 O -0.312 6.312
19 C 0.012 3.988
20 C -0.194 4.194
21 C -0.218 4.218
22 C -0.194 4.194
23 C 0.031 3.969
24 H 0.086 0.914
25 O -0.376 6.376
26 C -0.029 4.029
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.059 0.941
30 H 0.091 0.909
31 H 0.094 0.906
32 H 0.246 0.754
33 H 0.124 0.876
34 H 0.123 0.877
35 H 0.088 0.912
36 H 0.084 0.916
37 H 0.115 0.885
38 H 0.120 0.880
39 H 0.115 0.885
40 H 0.125 0.875
41 H 0.128 0.872
42 H 0.244 0.756
43 H 0.064 0.936
44 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 23.659 1.412 -0.125 23.701
hybrid contribution -1.175 1.433 0.149 1.859
sum 22.484 2.845 0.024 22.663
Atomic orbital electron populations
1.69979 1.07631 1.27353 1.55282 1.25974 0.95863 1.01266 1.00066
0.85888 0.79094 0.79616 0.77699 1.19625 1.24525 1.17532 1.18822
0.86302 0.93642 1.39279 0.93052 1.44394 1.07720 1.33860 1.47740
1.21079 0.91832 0.90547 0.94121 1.22263 0.99819 0.97487 0.97909
1.20686 0.87497 0.91608 0.93749 0.90428 1.45801 1.09827 1.25015
1.54917 1.20791 0.83093 0.85889 0.80282 1.90681 1.80472 1.24304
1.49611 1.22273 0.84197 0.95283 1.01434 1.87963 1.19563 1.47833
1.75875 1.22253 0.85270 0.95137 0.96100 1.22127 0.94225 1.04360
0.98666 1.23178 1.04036 0.99071 0.95519 1.23084 0.94800 0.98820
1.02664 1.22421 0.93624 0.90535 0.90363 0.91425 1.86429 1.40265
1.47001 1.63905 1.22070 0.97387 0.92580 0.90824 0.92916 0.92306
0.94140 0.90859 0.90632 0.75449 0.87554 0.87738 0.91179 0.91593
0.88544 0.88032 0.88458 0.87542 0.87233 0.75633 0.93576 0.92139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -57.78 13.97 21.65 0.30 -57.48 16
2 C -0.04 -2.03 5.24 84.86 0.44 -1.59 16
3 Si 0.95 42.49 24.35 68.60 1.67 44.16 16
4 H -0.27 -11.09 6.70 99.48 0.67 -10.42 16
5 H -0.32 -14.83 7.11 99.48 0.71 -14.13 16
6 H -0.25 -10.34 6.46 99.48 0.64 -9.70 16
7 C -0.25 -13.41 10.06 84.03 0.85 -12.56 16
8 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16
9 N -0.61 -26.17 2.79 -698.38 -1.95 -28.12 16
10 C 0.15 5.37 6.27 86.31 0.54 5.91 16
11 C -0.13 -4.33 5.77 30.67 0.18 -4.15 16
12 C 0.17 5.30 2.47 45.01 0.11 5.41 16
13 H 0.08 2.62 7.58 -2.39 -0.02 2.60 16
14 N -0.70 -19.50 4.15 -442.42 -1.84 -21.34 16
15 C 0.51 14.99 7.87 87.66 0.69 15.68 16
16 O -0.57 -21.87 16.16 16.02 0.26 -21.61 16
17 C 0.05 0.99 6.42 71.24 0.46 1.45 16
18 O -0.39 -9.96 9.88 -129.94 -1.28 -11.24 16
19 C 0.09 1.51 6.22 71.98 0.45 1.96 16
20 C -0.18 -3.00 6.05 -10.79 -0.07 -3.06 16
21 C -0.18 -2.53 10.18 30.62 0.31 -2.22 16
22 C -0.16 -1.82 10.25 30.62 0.31 -1.50 16
23 C 0.09 2.90 3.36 30.67 0.10 3.00 16
24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
25 O -0.57 -15.65 13.21 -148.98 -1.97 -17.62 16
26 C 0.10 3.58 3.51 86.36 0.30 3.88 16
27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16
28 H 0.06 2.20 7.94 -2.39 -0.02 2.19 16
29 H 0.04 1.36 7.74 -2.38 -0.02 1.34 16
30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16
32 H 0.41 10.13 6.87 -92.71 -0.64 9.50 16
33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16
34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
36 H 0.07 0.93 7.88 -2.39 -0.02 0.91 16
37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16
39 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16
40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
41 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16
42 H 0.39 8.04 9.08 -74.06 -0.67 7.37 16
43 H 0.05 1.58 5.48 -2.39 -0.01 1.56 16
44 H 0.06 2.45 4.48 -2.39 -0.01 2.44 16
Total: -1.00 -71.96 351.31 -0.52 -72.49
By element:
Atomic # 1 Polarization: 28.94 SS G_CDS: -0.40 Total: 28.54 kcal
Atomic # 6 Polarization: 7.53 SS G_CDS: 4.68 Total: 12.21 kcal
Atomic # 7 Polarization: -103.45 SS G_CDS: -3.48 Total: -106.94 kcal
Atomic # 8 Polarization: -47.47 SS G_CDS: -2.99 Total: -50.47 kcal
Atomic # 14 Polarization: 42.49 SS G_CDS: 1.67 Total: 44.16 kcal
Total: -71.96 -0.52 -72.49 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099702222.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.576 kcal
(2) G-P(sol) polarization free energy of solvation -71.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.486 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds