Wall clock time and date at job start Tue Mar 31 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99808 * 2 1 4 4 H 1.48505 * 109.47086 * 269.99572 * 3 2 1 5 5 H 1.48496 * 109.47279 * 29.99498 * 3 2 1 6 6 H 1.48503 * 109.47309 * 149.99891 * 3 2 1 7 7 C 1.38947 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 0.02562 * 7 2 1 9 9 N 1.37104 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99833 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99775 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.47088 * 180.02562 * 12 10 9 14 14 C 1.46896 * 110.99993 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.46954 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47161 * 180.02562 * 15 14 13 17 17 C 1.34773 * 119.99968 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00360 * 359.73034 * 17 16 15 19 19 C 1.50706 * 120.00081 * 180.02562 * 17 16 15 20 20 H 1.09000 * 110.21391 * 41.65447 * 19 17 16 21 21 C 1.54480 * 110.24451 * 279.72875 * 19 17 16 22 22 C 1.54628 * 101.76211 * 215.58282 * 21 19 17 23 23 C 1.51279 * 104.19779 * 24.79842 * 22 21 19 24 24 O 1.21274 * 124.94331 * 163.71625 * 23 22 21 25 25 N 1.34419 * 110.11159 * 343.74657 * 23 22 21 26 26 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99862 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.47144 * 60.00547 * 12 10 9 29 29 H 1.09000 * 109.47125 * 300.00067 * 12 10 9 30 30 H 1.00898 * 110.99570 * 303.95572 * 13 12 10 31 31 H 1.09004 * 109.46619 * 60.00190 * 14 13 12 32 32 H 1.08993 * 109.47481 * 300.00171 * 14 13 12 33 33 H 1.09004 * 109.47116 * 60.00722 * 15 14 13 34 34 H 1.08998 * 109.47794 * 300.00634 * 15 14 13 35 35 H 0.96998 * 119.99507 * 0.02562 * 16 15 14 36 36 H 1.09002 * 110.96705 * 333.70167 * 21 19 17 37 37 H 1.08999 * 110.96815 * 97.42311 * 21 19 17 38 38 H 1.09002 * 110.48530 * 143.47857 * 22 21 19 39 39 H 1.09006 * 110.48540 * 266.11550 * 22 21 19 40 40 H 0.97007 * 124.34261 * 179.59966 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4210 0.0000 12 6 5.5608 -2.3704 0.0000 13 7 6.0505 -3.7555 -0.0006 14 6 7.5190 -3.7946 -0.0012 15 6 7.9903 -5.2501 -0.0012 16 7 9.4549 -5.2892 -0.0012 17 6 10.0973 -6.4739 -0.0007 18 8 9.4632 -7.5077 0.0047 19 6 11.6039 -6.5141 -0.0001 20 1 12.0005 -5.7600 0.6797 21 6 12.1453 -6.2839 -1.4285 22 6 13.3852 -7.2075 -1.4483 23 6 13.0802 -8.2605 -0.4058 24 8 13.6573 -9.3220 -0.3012 25 7 12.0761 -7.8485 0.3873 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3632 -0.0004 28 1 5.9241 -1.8567 0.8900 29 1 5.9241 -1.8566 -0.8900 30 1 5.6750 -4.2720 0.7805 31 1 7.8962 -3.2909 0.8888 32 1 7.8955 -3.2904 -0.8911 33 1 7.6131 -5.7542 -0.8911 34 1 7.6138 -5.7541 0.8889 35 1 9.9620 -4.4623 -0.0009 36 1 11.4159 -6.5940 -2.1768 37 1 12.4316 -5.2423 -1.5740 38 1 13.5039 -7.6659 -2.4301 39 1 14.2811 -6.6493 -1.1761 40 1 11.7108 -8.3667 1.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148418097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:07 Heat of formation + Delta-G solvation = -136.182899 kcal Electronic energy + Delta-G solvation = -22710.125290 eV Core-core repulsion = 18944.330211 eV Total energy + Delta-G solvation = -3765.795079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81562 -40.34666 -40.15127 -37.64902 -37.13860 -36.03170 -35.26872 -33.73933 -32.27543 -31.09419 -29.18719 -27.49630 -25.38386 -23.69101 -22.98880 -21.70880 -21.41685 -21.28211 -20.28585 -18.95106 -18.27004 -17.74507 -17.29889 -17.09375 -16.79591 -16.70276 -16.24027 -15.89839 -15.48067 -15.36434 -14.95327 -14.82885 -14.70620 -14.51778 -14.19083 -14.07206 -13.93486 -13.54600 -13.37892 -12.98688 -12.90281 -12.56964 -12.39463 -12.36159 -12.07241 -11.96129 -11.49883 -11.24582 -11.02142 -10.44823 -10.24182 -10.23070 -10.14265 -9.35031 -8.40107 -6.01748 1.31574 1.38320 1.43989 1.46312 1.47233 1.87724 1.97446 2.25150 2.41601 2.82841 3.16270 3.31111 3.37380 3.53945 3.76820 3.92804 4.04320 4.12171 4.13691 4.20127 4.47799 4.51114 4.51693 4.62970 4.84096 4.93398 4.97828 5.00527 5.07591 5.32207 5.53630 5.67259 5.89756 5.91794 6.03128 6.32558 6.49227 6.60731 6.89387 7.10791 7.19841 7.40957 7.98455 8.77652 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.050311 B = 0.001912 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.408675 B =14641.040634 C =15019.751670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.226 1.226 7 C -0.331 4.331 8 H 0.052 0.948 9 N -0.589 5.589 10 C 0.444 3.556 11 O -0.618 6.618 12 C 0.067 3.933 13 N -0.694 5.694 14 C 0.059 3.941 15 C 0.125 3.875 16 N -0.700 5.700 17 C 0.501 3.499 18 O -0.584 6.584 19 C 0.118 3.882 20 H 0.154 0.846 21 C -0.113 4.113 22 C -0.145 4.145 23 C 0.508 3.492 24 O -0.590 6.590 25 N -0.715 5.715 26 H 0.279 0.721 27 H 0.391 0.609 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.344 0.656 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.425 0.575 36 H 0.075 0.925 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.654 0.877 -0.698 32.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.217 4.217 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.149 1.149 7 C -0.460 4.460 8 H 0.070 0.930 9 N -0.231 5.231 10 C 0.232 3.768 11 O -0.503 6.503 12 C -0.066 4.066 13 N -0.327 5.327 14 C -0.070 4.070 15 C 0.000 4.000 16 N -0.354 5.354 17 C 0.286 3.714 18 O -0.463 6.463 19 C 0.009 3.991 20 H 0.171 0.829 21 C -0.151 4.151 22 C -0.185 4.185 23 C 0.296 3.704 24 O -0.471 6.471 25 N -0.369 5.369 26 H 0.088 0.912 27 H 0.227 0.773 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.158 0.842 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 31.888 -0.980 -1.418 31.935 hybrid contribution -0.733 0.630 1.363 1.671 sum 31.155 -0.350 -0.055 31.157 Atomic orbital electron populations 1.69818 1.08306 1.29290 1.50258 1.26195 0.96510 1.02973 0.95991 0.85312 0.79552 0.76302 0.79983 1.18092 1.20277 1.14935 1.19004 0.81695 0.94846 1.50482 0.92990 1.42009 1.05687 1.07691 1.67746 1.21139 0.91348 0.83225 0.81079 1.90564 1.71570 1.32982 1.55193 1.21623 0.89048 0.91257 1.04632 1.59884 1.08162 1.12641 1.51978 1.22092 0.86511 0.94891 1.03457 1.21070 0.79875 0.97418 1.01663 1.45594 1.06795 1.08921 1.74107 1.21309 0.91137 0.83403 0.75505 1.90782 1.69532 1.35063 1.50933 1.21936 0.89100 0.86478 1.01566 0.82924 1.22763 0.96058 1.04155 0.92093 1.22434 1.01397 0.95750 0.98918 1.21751 0.78523 0.87105 0.82996 1.90740 1.55574 1.26873 1.73882 1.46194 1.36278 1.19790 1.34613 0.91173 0.77283 0.89797 0.86065 0.83701 0.91906 0.88067 0.92633 0.92964 0.73679 0.90581 0.83194 0.87226 0.84233 0.75274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 13.96 21.66 0.30 -55.64 16 2 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 3 Si 0.97 37.18 27.74 68.60 1.90 39.08 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.23 -7.03 6.52 99.48 0.65 -6.38 16 7 C -0.33 -19.08 10.16 84.04 0.85 -18.23 16 8 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 9 N -0.59 -26.57 5.09 -306.98 -1.56 -28.14 16 10 C 0.44 19.04 7.82 87.65 0.69 19.73 16 11 O -0.62 -33.73 15.78 -3.08 -0.05 -33.78 16 12 C 0.07 1.72 6.17 85.55 0.53 2.25 16 13 N -0.69 -17.46 6.13 -517.96 -3.17 -20.63 16 14 C 0.06 0.80 5.80 86.30 0.50 1.30 16 15 C 0.12 2.02 5.93 86.38 0.51 2.53 16 16 N -0.70 -6.16 5.56 -463.05 -2.57 -8.74 16 17 C 0.50 7.00 7.03 87.66 0.62 7.62 16 18 O -0.58 -15.47 16.54 -3.04 -0.05 -15.52 16 19 C 0.12 0.72 3.93 44.70 0.18 0.89 16 20 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 21 C -0.11 -0.20 6.68 31.65 0.21 0.01 16 22 C -0.15 -0.83 6.86 30.59 0.21 -0.62 16 23 C 0.51 8.77 8.43 87.90 0.74 9.51 16 24 O -0.59 -16.61 18.03 -3.01 -0.05 -16.66 16 25 N -0.72 -10.08 5.46 -442.99 -2.42 -12.50 16 26 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.39 14.14 5.76 -92.71 -0.53 13.61 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.34 9.78 8.43 -89.70 -0.76 9.02 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.42 -0.15 8.47 -92.71 -0.79 -0.93 16 36 H 0.08 0.42 7.91 -2.39 -0.02 0.40 16 37 H 0.15 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.14 0.01 8.14 -2.38 -0.02 -0.01 16 40 H 0.41 6.68 8.94 -92.70 -0.83 5.85 16 Total: -1.00 -96.10 345.93 -4.02 -100.12 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -1.85 Total: 27.93 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 5.50 Total: 24.47 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -9.42 Total: -125.64 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -0.15 Total: -65.96 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 1.90 Total: 39.08 kcal Total: -96.10 -4.02 -100.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148418097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.060 kcal (2) G-P(sol) polarization free energy of solvation -96.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds