Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99979 * 2 1 4 4 H 1.48502 * 109.46672 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47212 * 119.99716 * 3 2 1 7 7 C 1.38951 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99319 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99322 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00498 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99405 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46758 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99935 * 180.02562 * 13 12 10 15 15 H 1.08994 * 110.88629 * 37.42650 * 14 13 12 16 16 C 1.55156 * 111.00307 * 273.54482 * 14 13 12 17 17 C 1.54324 * 102.94413 * 206.42433 * 16 14 13 18 18 N 1.47016 * 107.26889 * 22.19488 * 17 16 14 19 19 C 1.34777 * 125.64953 * 181.02636 * 18 17 16 20 20 O 1.21283 * 120.00463 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.74753 * 19 18 17 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 N 1.34775 * 120.00069 * 180.02562 * 22 21 19 24 24 O 1.21283 * 120.00006 * 359.97438 * 22 21 19 25 25 C 1.47426 * 108.70680 * 1.28811 * 18 17 16 26 26 H 0.97007 * 119.99805 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00427 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47269 * 60.00320 * 12 10 9 29 29 H 1.08994 * 109.47407 * 299.99803 * 12 10 9 30 30 H 1.00903 * 111.00186 * 56.05293 * 13 12 10 31 31 H 1.09003 * 110.71620 * 88.06194 * 16 14 13 32 32 H 1.09002 * 110.87567 * 324.86359 * 16 14 13 33 33 H 1.09004 * 109.87967 * 262.78223 * 17 16 14 34 34 H 1.08996 * 109.88311 * 141.61383 * 17 16 14 35 35 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 36 36 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 37 37 H 0.97002 * 120.00050 * 359.97438 * 23 22 21 38 38 H 0.96996 * 120.00041 * 180.02562 * 23 22 21 39 39 H 1.08999 * 110.36638 * 94.48082 * 25 18 17 40 40 H 1.09000 * 110.36899 * 216.80900 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8628 0.0011 13 7 2.1984 -5.9794 0.0004 14 6 1.4981 -7.2708 0.0003 15 1 0.6017 -7.2267 -0.6182 16 6 1.1549 -7.7174 1.4460 17 6 1.0923 -9.2548 1.3273 18 7 1.8747 -9.6331 0.1415 19 6 2.0489 -10.8885 -0.3169 20 8 2.7182 -11.0844 -1.3092 21 6 1.4173 -12.0494 0.4073 22 6 1.7684 -13.3333 -0.2995 23 7 1.3099 -14.5095 0.1726 24 8 2.4626 -13.3081 -1.2936 25 6 2.4423 -8.4125 -0.4597 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 -0.0002 28 1 0.6168 -4.9208 -0.8886 29 1 0.6175 -4.9204 0.8913 30 1 2.8338 -5.9124 0.7813 31 1 0.1902 -7.3149 1.7552 32 1 1.9378 -7.4158 2.1419 33 1 0.0575 -9.5754 1.2064 34 1 1.5231 -9.7132 2.2174 35 1 1.7895 -12.0849 1.4312 36 1 0.3345 -11.9252 0.4184 37 1 0.7544 -14.5297 0.9675 38 1 1.5362 -15.3359 -0.2821 39 1 3.4539 -8.2431 -0.0908 40 1 2.4419 -8.4896 -1.5469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181768500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = -98.839518 kcal Electronic energy + Delta-G solvation = -23297.510124 eV Core-core repulsion = 19533.334376 eV Total energy + Delta-G solvation = -3764.175748 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61581 -39.36253 -38.31355 -37.43782 -34.78550 -34.00266 -33.79537 -31.45370 -31.17107 -30.20655 -28.74593 -26.11439 -24.07941 -23.37954 -21.62021 -20.89667 -19.46675 -19.28062 -17.96091 -17.82029 -17.58112 -16.73962 -16.39840 -15.90867 -15.81939 -15.19881 -14.95935 -14.53738 -14.35229 -13.96747 -13.90645 -13.69802 -13.52905 -13.05260 -12.85138 -12.78642 -12.50438 -12.22038 -12.02729 -11.66264 -11.49678 -11.34727 -11.03581 -10.97096 -10.45761 -10.45153 -10.22847 -10.01570 -9.67339 -9.51739 -8.81844 -8.50064 -8.11863 -7.98092 -6.43365 -3.84231 2.29584 2.52287 2.52974 3.19474 3.25301 3.27329 3.30057 3.87899 3.99270 4.06529 4.21716 4.42533 4.47474 4.60874 4.70858 4.81000 4.82403 5.06453 5.10544 5.20031 5.23543 5.28218 5.55889 5.68899 5.73608 5.89170 5.90836 5.94214 6.06315 6.24458 6.41543 6.91717 7.11169 7.31287 7.53683 7.55842 7.91392 8.04172 8.09227 8.59129 9.16088 9.51999 10.03326 10.74178 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.056331 B = 0.002142 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.940783 B =13070.136943 C =13303.445719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.656 5.656 14 C 0.079 3.921 15 H 0.095 0.905 16 C -0.169 4.169 17 C 0.104 3.896 18 N -0.623 5.623 19 C 0.526 3.474 20 O -0.494 6.494 21 C -0.162 4.162 22 C 0.514 3.486 23 N -0.861 5.861 24 O -0.495 6.495 25 C 0.118 3.882 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.353 0.647 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.399 0.601 38 H 0.403 0.597 39 H 0.075 0.925 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 -24.374 7.597 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.288 5.288 14 C -0.033 4.033 15 H 0.113 0.887 16 C -0.208 4.208 17 C -0.020 4.020 18 N -0.361 5.361 19 C 0.312 3.688 20 O -0.366 6.366 21 C -0.205 4.205 22 C 0.296 3.704 23 N -0.427 5.427 24 O -0.367 6.367 25 C -0.005 4.005 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.174 0.826 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.227 0.773 38 H 0.234 0.766 39 H 0.093 0.907 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.341 -24.135 5.660 25.168 hybrid contribution -0.990 0.496 1.429 1.808 sum -5.332 -23.639 7.089 25.249 Atomic orbital electron populations 1.69602 1.05933 1.28286 1.50492 1.25266 0.95646 0.99746 0.97265 0.85910 0.78760 0.80405 0.79104 1.19854 1.20983 1.19916 1.19660 0.93370 0.82223 1.47717 0.87940 1.41849 1.09190 1.04591 1.64296 1.19786 0.88395 0.84707 0.84653 1.90534 1.13741 1.87029 1.55389 1.21685 0.94265 0.90729 1.01322 1.59910 1.18308 0.99096 1.51468 1.22801 0.96563 0.89500 0.94424 0.88679 1.23465 1.03601 0.94227 0.99541 1.21982 0.95783 0.96115 0.88131 1.48481 1.52295 1.06031 1.29266 1.19541 0.81911 0.82188 0.85134 1.90891 1.37897 1.83153 1.24625 1.21562 1.04266 0.92748 1.01903 1.20013 0.80278 0.85121 0.84963 1.43856 1.56545 1.08835 1.33459 1.90933 1.35160 1.86345 1.24230 1.22180 0.97073 0.81631 0.99605 0.91810 0.77454 0.89454 0.93637 0.82585 0.89745 0.90065 0.91310 0.91404 0.86133 0.86105 0.77305 0.76620 0.90700 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.99 5.29 -10.96 -0.06 -14.04 16 10 C 0.44 10.10 7.82 -10.98 -0.09 10.02 16 11 O -0.58 -15.61 15.78 5.55 0.09 -15.53 16 12 C 0.05 0.87 6.04 -4.97 -0.03 0.84 16 13 N -0.66 -9.88 6.00 -105.60 -0.63 -10.52 16 14 C 0.08 0.89 3.33 -65.44 -0.22 0.67 16 15 H 0.10 1.04 7.92 -51.93 -0.41 0.62 16 16 C -0.17 -1.37 6.53 -24.90 -0.16 -1.54 16 17 C 0.10 0.69 6.48 -3.07 -0.02 0.67 16 18 N -0.62 -6.39 3.32 -170.38 -0.57 -6.96 16 19 C 0.53 6.26 7.84 -10.98 -0.09 6.17 16 20 O -0.49 -8.63 14.43 -18.96 -0.27 -8.90 16 21 C -0.16 -1.06 5.38 -29.03 -0.16 -1.22 16 22 C 0.51 4.74 8.09 -10.98 -0.09 4.65 16 23 N -0.86 -3.69 8.87 31.22 0.28 -3.42 16 24 O -0.50 -7.71 15.02 -18.96 -0.28 -7.99 16 25 C 0.12 1.44 6.61 -2.41 -0.02 1.42 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 28 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.35 5.45 8.01 -39.29 -0.31 5.14 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.69 7.82 -51.93 -0.41 0.28 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.12 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.40 0.24 8.83 -40.82 -0.36 -0.12 16 38 H 0.40 1.57 8.93 -40.82 -0.36 1.21 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.18 8.03 -51.93 -0.42 0.77 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -38.45 343.93 -7.16 -45.61 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.49 Total: 10.44 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -1.10 Total: 13.74 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.26 Total: -58.45 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.47 Total: -32.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.45 -7.16 -45.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181768500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.229 kcal (2) G-P(sol) polarization free energy of solvation -38.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds