Wall clock time and date at job start Tue Mar 31 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99979 * 2 1 4 4 H 1.48502 * 109.46672 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47212 * 119.99716 * 3 2 1 7 7 C 1.38951 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99319 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99322 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00498 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99405 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46758 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99935 * 180.02562 * 13 12 10 15 15 H 1.08994 * 110.88629 * 37.42650 * 14 13 12 16 16 C 1.55156 * 111.00307 * 273.54482 * 14 13 12 17 17 C 1.54324 * 102.94413 * 206.42433 * 16 14 13 18 18 N 1.47016 * 107.26889 * 22.19488 * 17 16 14 19 19 C 1.34777 * 125.64953 * 181.02636 * 18 17 16 20 20 O 1.21283 * 120.00463 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.74753 * 19 18 17 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 N 1.34775 * 120.00069 * 180.02562 * 22 21 19 24 24 O 1.21283 * 120.00006 * 359.97438 * 22 21 19 25 25 C 1.47426 * 108.70680 * 1.28811 * 18 17 16 26 26 H 0.97007 * 119.99805 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00427 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47269 * 60.00320 * 12 10 9 29 29 H 1.08994 * 109.47407 * 299.99803 * 12 10 9 30 30 H 1.00903 * 111.00186 * 56.05293 * 13 12 10 31 31 H 1.09003 * 110.71620 * 88.06194 * 16 14 13 32 32 H 1.09002 * 110.87567 * 324.86359 * 16 14 13 33 33 H 1.09004 * 109.87967 * 262.78223 * 17 16 14 34 34 H 1.08996 * 109.88311 * 141.61383 * 17 16 14 35 35 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 36 36 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 37 37 H 0.97002 * 120.00050 * 359.97438 * 23 22 21 38 38 H 0.96996 * 120.00041 * 180.02562 * 23 22 21 39 39 H 1.08999 * 110.36638 * 94.48082 * 25 18 17 40 40 H 1.09000 * 110.36899 * 216.80900 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8628 0.0011 13 7 2.1984 -5.9794 0.0004 14 6 1.4981 -7.2708 0.0003 15 1 0.6017 -7.2267 -0.6182 16 6 1.1549 -7.7174 1.4460 17 6 1.0923 -9.2548 1.3273 18 7 1.8747 -9.6331 0.1415 19 6 2.0489 -10.8885 -0.3169 20 8 2.7182 -11.0844 -1.3092 21 6 1.4173 -12.0494 0.4073 22 6 1.7684 -13.3333 -0.2995 23 7 1.3099 -14.5095 0.1726 24 8 2.4626 -13.3081 -1.2936 25 6 2.4423 -8.4125 -0.4597 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 -0.0002 28 1 0.6168 -4.9208 -0.8886 29 1 0.6175 -4.9204 0.8913 30 1 2.8338 -5.9124 0.7813 31 1 0.1902 -7.3149 1.7552 32 1 1.9378 -7.4158 2.1419 33 1 0.0575 -9.5754 1.2064 34 1 1.5231 -9.7132 2.2174 35 1 1.7895 -12.0849 1.4312 36 1 0.3345 -11.9252 0.4184 37 1 0.7544 -14.5297 0.9675 38 1 1.5362 -15.3359 -0.2821 39 1 3.4539 -8.2431 -0.0908 40 1 2.4419 -8.4896 -1.5469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181768500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:27 Heat of formation + Delta-G solvation = -133.131830 kcal Electronic energy + Delta-G solvation = -23298.997150 eV Core-core repulsion = 19533.334376 eV Total energy + Delta-G solvation = -3765.662774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41764 -40.32812 -39.85794 -38.48119 -36.18057 -35.54313 -34.61105 -33.26482 -32.20307 -30.89790 -29.70399 -27.67154 -25.67153 -24.21553 -22.28976 -21.77258 -21.08731 -20.16005 -19.90987 -18.56931 -18.15999 -17.80412 -17.44732 -17.00478 -16.76952 -16.48048 -16.24868 -15.86932 -15.74890 -15.27530 -15.01827 -14.62140 -14.49465 -14.07644 -14.02499 -13.76443 -13.66352 -13.45866 -13.12072 -12.95433 -12.87752 -12.61104 -12.42786 -12.32306 -12.11607 -11.71644 -11.49472 -11.24330 -10.58084 -10.56899 -10.34924 -10.00512 -9.64045 -9.28302 -8.45793 -5.94226 1.40446 1.42688 1.53155 1.62753 1.74840 1.78480 2.06840 2.30241 2.72795 2.94975 3.21669 3.35746 3.48598 3.70750 3.84639 4.04260 4.16753 4.28684 4.32581 4.39699 4.42008 4.43351 4.52256 4.62309 4.73519 4.85929 4.90323 5.07402 5.15343 5.27989 5.41969 5.89875 5.97264 6.10633 6.38444 6.49573 6.59313 6.61582 7.13853 7.20613 7.49211 7.57762 8.13478 8.71138 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.056331 B = 0.002142 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.940783 B =13070.136943 C =13303.445719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.070 3.930 13 N -0.678 5.678 14 C 0.083 3.917 15 H 0.103 0.897 16 C -0.161 4.161 17 C 0.102 3.898 18 N -0.620 5.620 19 C 0.514 3.486 20 O -0.564 6.564 21 C -0.147 4.147 22 C 0.506 3.494 23 N -0.835 5.835 24 O -0.572 6.572 25 C 0.116 3.884 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.349 0.651 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.421 0.579 38 H 0.406 0.594 39 H 0.058 0.942 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -25.345 10.075 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.513 6.513 12 C -0.062 4.062 13 N -0.310 5.310 14 C -0.028 4.028 15 H 0.121 0.879 16 C -0.200 4.200 17 C -0.020 4.020 18 N -0.355 5.355 19 C 0.303 3.697 20 O -0.441 6.441 21 C -0.189 4.189 22 C 0.290 3.710 23 N -0.401 5.401 24 O -0.450 6.450 25 C -0.008 4.008 26 H 0.087 0.913 27 H 0.232 0.768 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.169 0.831 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.253 0.747 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.944 -25.145 8.231 27.354 hybrid contribution -0.213 0.726 0.684 1.020 sum -7.157 -24.420 8.915 26.963 Atomic orbital electron populations 1.69656 1.06712 1.29341 1.50217 1.26009 0.96565 1.02320 0.96307 0.85014 0.77787 0.76805 0.78879 1.20019 1.19431 1.19627 1.19615 0.92682 0.84123 1.50031 0.90461 1.41911 1.09365 1.04644 1.65015 1.20959 0.88260 0.86305 0.82177 1.90503 1.16059 1.88004 1.56704 1.21515 0.93763 0.87363 1.03534 1.59822 1.18920 1.00336 1.51883 1.22743 0.95850 0.87028 0.97131 0.87901 1.23418 1.04511 0.95450 0.96621 1.22297 0.97295 0.94999 0.87400 1.48564 1.51959 1.04999 1.29995 1.20571 0.81081 0.83521 0.84576 1.90871 1.41113 1.84241 1.27908 1.21621 1.06332 0.88571 1.02335 1.20579 0.79297 0.86974 0.84159 1.43653 1.55214 1.07649 1.33564 1.90918 1.38855 1.87480 1.27717 1.21984 0.97083 0.83651 0.98055 0.91282 0.76836 0.87881 0.90338 0.83095 0.87646 0.90368 0.87920 0.88505 0.81951 0.81780 0.74676 0.76281 0.92327 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.71 29.55 68.60 2.03 44.73 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -28.73 5.29 -306.98 -1.62 -30.36 16 10 C 0.44 20.19 7.82 87.66 0.69 20.88 16 11 O -0.63 -34.51 15.78 -3.06 -0.05 -34.56 16 12 C 0.07 2.22 6.04 85.56 0.52 2.73 16 13 N -0.68 -20.03 6.00 -487.99 -2.93 -22.96 16 14 C 0.08 1.74 3.33 46.38 0.15 1.89 16 15 H 0.10 2.01 7.92 -2.39 -0.02 1.99 16 16 C -0.16 -2.02 6.53 31.78 0.21 -1.82 16 17 C 0.10 0.88 6.48 86.73 0.56 1.44 16 18 N -0.62 -11.63 3.32 -811.36 -2.70 -14.32 16 19 C 0.51 11.77 7.84 87.66 0.69 12.46 16 20 O -0.56 -20.87 14.43 20.40 0.29 -20.58 16 21 C -0.15 -1.40 5.38 29.10 0.16 -1.24 16 22 C 0.51 8.61 8.09 87.66 0.71 9.32 16 23 N -0.83 -5.00 8.87 -173.53 -1.54 -6.54 16 24 O -0.57 -18.56 15.02 20.40 0.31 -18.26 16 25 C 0.12 2.89 6.61 86.93 0.57 3.46 16 26 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 27 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 28 H 0.10 2.96 8.09 -2.39 -0.02 2.94 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.35 10.74 8.01 -89.69 -0.72 10.02 16 31 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.08 7.82 -2.39 -0.02 1.06 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.16 0.21 8.14 -2.38 -0.02 0.19 16 36 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.42 -1.24 8.83 -92.71 -0.82 -2.06 16 38 H 0.41 2.47 8.93 -92.71 -0.83 1.64 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.65 8.03 -2.39 -0.02 1.63 16 Total: -1.00 -91.81 343.93 -2.37 -94.18 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -1.98 Total: 26.30 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 5.54 Total: 30.88 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -8.50 Total: -122.71 kcal Atomic # 8 Polarization: -73.95 SS G_CDS: 0.55 Total: -73.40 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -91.81 -2.37 -94.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181768500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.949 kcal (2) G-P(sol) polarization free energy of solvation -91.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds