Wall clock time and date at job start Tue Mar 31 2020 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99937 * 2 1 4 4 H 1.48501 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46850 * 299.99595 * 3 2 1 6 6 H 1.48497 * 109.47123 * 59.99633 * 3 2 1 7 7 C 1.38811 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.65236 * 359.95644 * 9 7 2 11 11 C 1.54316 * 107.27568 * 178.97773 * 10 9 7 12 12 H 1.08999 * 110.87697 * 96.23821 * 11 10 9 13 13 O 1.42899 * 110.72448 * 219.44573 * 11 10 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 15 15 H 1.08998 * 111.00511 * 277.42784 * 14 11 10 16 16 N 1.46500 * 111.04193 * 153.58939 * 14 11 10 17 17 C 1.34770 * 120.00561 * 161.33100 * 16 14 11 18 18 O 1.21283 * 119.99925 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00305 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47135 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47022 * 180.02562 * 20 19 17 22 22 H 1.08997 * 109.82124 * 305.70046 * 21 20 19 23 23 C 1.54387 * 109.82869 * 184.81539 * 21 20 19 24 24 C 1.55448 * 102.18198 * 219.17818 * 23 21 20 25 25 C 1.54947 * 100.98834 * 34.04343 * 24 23 21 26 26 O 1.43236 * 109.83139 * 66.58835 * 21 20 19 27 27 C 1.47422 * 125.64571 * 179.97438 * 9 7 2 28 28 H 0.97006 * 120.00279 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88493 * 59.55525 * 10 9 7 30 30 H 1.09003 * 109.87996 * 298.39614 * 10 9 7 31 31 H 0.96707 * 113.99253 * 293.52308 * 13 11 10 32 32 H 0.97004 * 119.99482 * 341.33243 * 16 14 11 33 33 H 1.08997 * 109.46797 * 300.00116 * 19 17 16 34 34 H 1.09000 * 109.46714 * 60.00157 * 19 17 16 35 35 H 1.09001 * 109.46961 * 300.00013 * 20 19 17 36 36 H 1.08998 * 109.46806 * 60.00068 * 20 19 17 37 37 H 1.08999 * 110.84832 * 337.32188 * 23 21 20 38 38 H 1.09004 * 110.84404 * 100.93900 * 23 21 20 39 39 H 1.08999 * 111.06324 * 276.12159 * 24 23 21 40 40 H 1.09002 * 111.17837 * 152.00571 * 24 23 21 41 41 H 1.09006 * 110.30792 * 204.68817 * 25 24 23 42 42 H 1.08997 * 110.39575 * 82.56509 * 25 24 23 43 43 H 1.08998 * 110.36873 * 85.25284 * 27 9 7 44 44 H 1.09005 * 110.36491 * 322.92691 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4485 -4.0441 -0.0255 12 1 -0.6331 -4.4203 0.9807 13 8 -1.5631 -4.3162 -0.8774 14 6 0.8517 -4.6562 -0.6105 15 1 0.8564 -4.5966 -1.6988 16 7 1.0296 -6.0396 -0.1625 17 6 1.8618 -6.8627 -0.8306 18 8 2.4638 -6.4579 -1.8026 19 6 2.0443 -8.2859 -0.3700 20 6 3.0333 -8.9984 -1.2949 21 6 3.2181 -10.4436 -0.8277 22 1 3.5080 -10.4581 0.2229 23 6 4.3039 -11.1348 -1.6802 24 6 3.7154 -12.5614 -1.8671 25 6 2.1992 -12.2491 -1.9332 26 8 1.9973 -11.1715 -1.0051 27 6 1.9334 -3.7311 0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5579 -2.0523 -0.8826 30 1 -0.5542 -2.0843 0.9028 31 1 -2.4007 -3.9547 -0.5566 32 1 0.5484 -6.3632 0.6152 33 1 2.4309 -8.2912 0.6491 34 1 1.0849 -8.8025 -0.3975 35 1 2.6462 -8.9930 -2.3139 36 1 3.9927 -8.4819 -1.2679 37 1 4.4195 -10.6340 -2.6414 38 1 5.2524 -11.1720 -1.1444 39 1 3.9488 -13.1965 -1.0126 40 1 4.0643 -13.0127 -2.7959 41 1 1.6197 -13.1217 -1.6316 42 1 1.9188 -11.9390 -2.9399 43 1 2.1669 -4.0418 1.0189 44 1 2.8326 -3.7405 -0.6155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191167381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:08 Heat of formation + Delta-G solvation = -114.434040 kcal Electronic energy + Delta-G solvation = -24340.913204 eV Core-core repulsion = 20679.601570 eV Total energy + Delta-G solvation = -3661.311634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98851 -39.39316 -37.80655 -35.05427 -33.98259 -33.58209 -32.38200 -31.66426 -29.17824 -28.15206 -26.93664 -24.83355 -23.91553 -22.04660 -21.16549 -20.58487 -20.27377 -19.86317 -17.30083 -17.23576 -16.97612 -16.55597 -15.99098 -15.66880 -15.36447 -14.65748 -14.56148 -14.13361 -13.83261 -13.76599 -13.69208 -13.07731 -12.92459 -12.66523 -12.34505 -12.15806 -12.05267 -11.98562 -11.64084 -11.43636 -11.24470 -11.18262 -11.11307 -10.96304 -10.86011 -10.81914 -10.12383 -9.87604 -9.83161 -9.76070 -9.66514 -9.25352 -8.77614 -8.60639 -6.89797 -5.75210 -3.09535 2.91463 3.37164 3.40334 3.45581 3.48082 3.57243 4.17447 4.42549 4.47257 4.54631 4.64896 4.80311 4.85926 4.89077 5.11149 5.16995 5.24423 5.33902 5.38433 5.42733 5.45666 5.53071 5.56359 5.60414 5.63355 5.71034 5.75141 5.85706 6.00673 6.12336 6.15105 6.18544 6.58300 6.66391 6.78478 6.94363 7.34214 7.48324 7.72797 7.80311 8.13473 8.18792 8.51333 9.16463 9.76541 10.39878 11.36717 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031107 B = 0.002678 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.903679 B =10452.119850 C =11124.914670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.100 0.900 16 N -0.717 5.717 17 C 0.511 3.489 18 O -0.542 6.542 19 C -0.136 4.136 20 C -0.112 4.112 21 C 0.079 3.921 22 H 0.081 0.919 23 C -0.152 4.152 24 C -0.158 4.158 25 C 0.049 3.951 26 O -0.378 6.378 27 C 0.131 3.869 28 H 0.252 0.748 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.376 0.624 32 H 0.397 0.603 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -23.875 0.712 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.118 0.882 16 N -0.368 5.368 17 C 0.297 3.703 18 O -0.419 6.419 19 C -0.176 4.176 20 C -0.151 4.151 21 C 0.021 3.979 22 H 0.099 0.901 23 C -0.190 4.190 24 C -0.195 4.195 25 C -0.027 4.027 26 O -0.298 6.298 27 C 0.003 3.997 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.223 0.777 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.478 -23.595 -0.252 23.851 hybrid contribution -0.114 1.032 0.683 1.242 sum 3.364 -22.563 0.431 22.816 Atomic orbital electron populations 1.69935 1.04933 1.25070 1.57267 1.24823 0.95794 0.97794 1.02094 0.85988 0.78760 0.83465 0.77230 1.20417 1.21661 1.21731 1.19141 0.90582 0.82078 1.43661 0.90099 1.44266 1.01228 0.99954 1.87404 1.21814 0.85421 0.87824 1.02129 1.23457 0.85551 0.98555 0.91604 0.92475 1.86471 1.18763 1.79991 1.51609 1.22215 0.94381 0.79372 1.00703 0.88154 1.45971 1.46255 1.12232 1.32339 1.20699 0.78834 0.87592 0.83170 1.90704 1.46953 1.77281 1.26997 1.21606 1.02470 0.92512 1.00989 1.21727 1.00054 0.93272 0.99999 1.22829 0.84057 0.91537 0.99444 0.90119 1.23210 0.99099 0.95302 1.01357 1.23289 0.95842 0.97385 1.03001 1.23361 0.95510 0.90123 0.93713 1.88434 1.32881 1.44422 1.64013 1.21842 0.94965 0.85658 0.97206 0.93716 0.92117 0.93331 0.77699 0.76947 0.89163 0.88449 0.90671 0.90097 0.90076 0.89926 0.90461 0.90005 0.89902 0.92215 0.95944 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.31 55.49 0.57 -26.51 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.92 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.68 3.39 -170.09 -0.58 -16.26 16 10 C 0.15 3.71 5.15 -3.07 -0.02 3.69 16 11 C 0.07 1.29 3.96 -24.90 -0.10 1.19 16 12 H 0.06 0.94 7.99 -51.93 -0.42 0.53 16 13 O -0.56 -9.96 13.39 -35.23 -0.47 -10.43 16 14 C 0.14 2.70 3.04 -65.79 -0.20 2.50 16 15 H 0.10 2.26 7.73 -51.93 -0.40 1.86 16 16 N -0.72 -10.97 5.23 -51.74 -0.27 -11.24 16 17 C 0.51 7.94 7.83 -10.99 -0.09 7.85 16 18 O -0.54 -10.71 15.73 5.55 0.09 -10.62 16 19 C -0.14 -1.50 5.61 -27.88 -0.16 -1.66 16 20 C -0.11 -1.21 4.07 -26.73 -0.11 -1.32 16 21 C 0.08 0.70 3.51 -26.00 -0.09 0.61 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 C -0.15 -1.07 6.56 -24.70 -0.16 -1.24 16 24 C -0.16 -0.96 7.16 -24.40 -0.17 -1.13 16 25 C 0.05 0.38 7.78 38.19 0.30 0.67 16 26 O -0.38 -3.88 10.64 -35.23 -0.37 -4.25 16 27 C 0.13 2.88 6.93 -2.54 -0.02 2.86 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 30 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 31 H 0.38 5.04 9.12 45.56 0.42 5.45 16 32 H 0.40 4.80 8.52 -40.82 -0.35 4.45 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.02 7.89 -51.93 -0.41 0.61 16 35 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -34.49 356.42 -8.28 -42.77 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.53 Total: 6.80 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.06 Total: 7.08 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.28 Total: -54.01 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.76 Total: -25.30 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.49 -8.28 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191167381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.665 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds