Wall clock time and date at job start Tue Mar 31 2020 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99937 * 2 1 4 4 H 1.48501 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46850 * 299.99595 * 3 2 1 6 6 H 1.48497 * 109.47123 * 59.99633 * 3 2 1 7 7 C 1.38811 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.65236 * 359.95644 * 9 7 2 11 11 C 1.54316 * 107.27568 * 178.97773 * 10 9 7 12 12 H 1.08999 * 110.87697 * 96.23821 * 11 10 9 13 13 O 1.42899 * 110.72448 * 219.44573 * 11 10 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 15 15 H 1.08998 * 111.00511 * 277.42784 * 14 11 10 16 16 N 1.46500 * 111.04193 * 153.58939 * 14 11 10 17 17 C 1.34770 * 120.00561 * 161.33100 * 16 14 11 18 18 O 1.21283 * 119.99925 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00305 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47135 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47022 * 180.02562 * 20 19 17 22 22 H 1.08997 * 109.82124 * 305.70046 * 21 20 19 23 23 C 1.54387 * 109.82869 * 184.81539 * 21 20 19 24 24 C 1.55448 * 102.18198 * 219.17818 * 23 21 20 25 25 C 1.54947 * 100.98834 * 34.04343 * 24 23 21 26 26 O 1.43236 * 109.83139 * 66.58835 * 21 20 19 27 27 C 1.47422 * 125.64571 * 179.97438 * 9 7 2 28 28 H 0.97006 * 120.00279 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88493 * 59.55525 * 10 9 7 30 30 H 1.09003 * 109.87996 * 298.39614 * 10 9 7 31 31 H 0.96707 * 113.99253 * 293.52308 * 13 11 10 32 32 H 0.97004 * 119.99482 * 341.33243 * 16 14 11 33 33 H 1.08997 * 109.46797 * 300.00116 * 19 17 16 34 34 H 1.09000 * 109.46714 * 60.00157 * 19 17 16 35 35 H 1.09001 * 109.46961 * 300.00013 * 20 19 17 36 36 H 1.08998 * 109.46806 * 60.00068 * 20 19 17 37 37 H 1.08999 * 110.84832 * 337.32188 * 23 21 20 38 38 H 1.09004 * 110.84404 * 100.93900 * 23 21 20 39 39 H 1.08999 * 111.06324 * 276.12159 * 24 23 21 40 40 H 1.09002 * 111.17837 * 152.00571 * 24 23 21 41 41 H 1.09006 * 110.30792 * 204.68817 * 25 24 23 42 42 H 1.08997 * 110.39575 * 82.56509 * 25 24 23 43 43 H 1.08998 * 110.36873 * 85.25284 * 27 9 7 44 44 H 1.09005 * 110.36491 * 322.92691 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4485 -4.0441 -0.0255 12 1 -0.6331 -4.4203 0.9807 13 8 -1.5631 -4.3162 -0.8774 14 6 0.8517 -4.6562 -0.6105 15 1 0.8564 -4.5966 -1.6988 16 7 1.0296 -6.0396 -0.1625 17 6 1.8618 -6.8627 -0.8306 18 8 2.4638 -6.4579 -1.8026 19 6 2.0443 -8.2859 -0.3700 20 6 3.0333 -8.9984 -1.2949 21 6 3.2181 -10.4436 -0.8277 22 1 3.5080 -10.4581 0.2229 23 6 4.3039 -11.1348 -1.6802 24 6 3.7154 -12.5614 -1.8671 25 6 2.1992 -12.2491 -1.9332 26 8 1.9973 -11.1715 -1.0051 27 6 1.9334 -3.7311 0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5579 -2.0523 -0.8826 30 1 -0.5542 -2.0843 0.9028 31 1 -2.4007 -3.9547 -0.5566 32 1 0.5484 -6.3632 0.6152 33 1 2.4309 -8.2912 0.6491 34 1 1.0849 -8.8025 -0.3975 35 1 2.6462 -8.9930 -2.3139 36 1 3.9927 -8.4819 -1.2679 37 1 4.4195 -10.6340 -2.6414 38 1 5.2524 -11.1720 -1.1444 39 1 3.9488 -13.1965 -1.0126 40 1 4.0643 -13.0127 -2.7959 41 1 1.6197 -13.1217 -1.6316 42 1 1.9188 -11.9390 -2.9399 43 1 2.1669 -4.0418 1.0189 44 1 2.8326 -3.7405 -0.6155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191167381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:08 Heat of formation + Delta-G solvation = -141.944206 kcal Electronic energy + Delta-G solvation = -24342.106135 eV Core-core repulsion = 20679.601570 eV Total energy + Delta-G solvation = -3662.504564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12046 -40.32555 -39.36838 -36.69915 -35.55776 -34.49836 -33.59530 -32.95050 -30.50580 -29.55927 -28.55539 -26.48690 -25.09026 -22.72592 -22.40371 -22.02053 -21.67124 -21.12928 -19.11037 -18.44355 -17.91785 -17.86208 -17.34827 -16.74897 -16.52266 -16.41130 -15.81915 -15.42473 -15.26423 -14.81077 -14.50506 -14.47973 -14.31212 -14.22119 -13.77118 -13.61673 -13.18371 -13.09236 -12.95493 -12.77870 -12.74860 -12.61455 -12.22045 -12.07211 -11.90728 -11.84406 -11.80470 -11.64365 -11.54166 -11.12090 -10.79959 -10.75450 -10.41840 -10.14900 -8.99108 -7.90765 -5.28193 1.44431 1.46045 1.56443 1.67037 2.10995 2.46672 2.95757 3.11457 3.30025 3.53274 3.60883 3.68182 3.85147 3.91505 4.03348 4.04364 4.15507 4.19210 4.26894 4.37857 4.43605 4.48989 4.55896 4.65720 4.80335 4.80610 4.85460 4.90872 4.97343 4.99633 5.03405 5.14786 5.24865 5.34860 5.37451 5.42063 5.48799 5.64123 6.11572 6.15267 6.58507 6.85507 7.02826 7.29961 7.67111 8.29725 9.19285 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031107 B = 0.002678 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.903679 B =10452.119850 C =11124.914670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.161 3.839 11 C 0.091 3.909 12 H 0.097 0.903 13 O -0.570 6.570 14 C 0.152 3.848 15 H 0.065 0.935 16 N -0.704 5.704 17 C 0.507 3.493 18 O -0.590 6.590 19 C -0.123 4.123 20 C -0.111 4.111 21 C 0.080 3.920 22 H 0.097 0.903 23 C -0.154 4.154 24 C -0.150 4.150 25 C 0.040 3.960 26 O -0.399 6.399 27 C 0.132 3.868 28 H 0.250 0.750 29 H 0.020 0.980 30 H 0.027 0.973 31 H 0.396 0.604 32 H 0.417 0.583 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.224 -25.905 2.144 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.114 0.886 13 O -0.377 6.377 14 C 0.045 3.955 15 H 0.083 0.917 16 N -0.356 5.356 17 C 0.296 3.704 18 O -0.470 6.470 19 C -0.162 4.162 20 C -0.149 4.149 21 C 0.023 3.977 22 H 0.114 0.886 23 C -0.191 4.191 24 C -0.188 4.188 25 C -0.036 4.036 26 O -0.319 6.319 27 C 0.006 3.994 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.247 0.753 32 H 0.255 0.745 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.862 -25.676 1.212 25.993 hybrid contribution -0.255 1.638 0.188 1.669 sum 3.607 -24.038 1.400 24.347 Atomic orbital electron populations 1.70137 1.06184 1.25516 1.57899 1.25681 0.96780 1.01050 1.02109 0.84959 0.78078 0.79066 0.76897 1.19199 1.21891 1.21269 1.19480 0.91001 0.83470 1.43633 0.90131 1.44546 1.02315 1.00862 1.87364 1.21627 0.84303 0.91415 0.99129 1.23154 0.85709 0.94482 0.93536 0.88553 1.86437 1.19520 1.79798 1.51982 1.21692 0.93923 0.81347 0.98522 0.91700 1.45773 1.46473 1.10327 1.33009 1.21582 0.77559 0.89096 0.82208 1.90693 1.48726 1.78403 1.29156 1.21627 1.03385 0.88840 1.02381 1.21704 0.99478 0.94904 0.98827 1.22855 0.84292 0.90063 1.00481 0.88570 1.23235 0.99329 0.95689 1.00874 1.23283 0.94452 0.96898 1.04145 1.23539 0.96977 0.89951 0.93140 1.88400 1.33757 1.45206 1.64529 1.21917 0.94941 0.84649 0.97916 0.94100 0.96210 0.95442 0.75330 0.74505 0.86001 0.87152 0.93035 0.90759 0.90943 0.88433 0.89403 0.88751 0.88614 0.92746 0.93929 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 10.31 21.65 0.22 -56.72 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.25 -14.30 10.28 84.03 0.86 -13.43 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.62 -33.16 3.39 -692.04 -2.35 -35.51 16 10 C 0.16 7.92 5.15 86.73 0.45 8.36 16 11 C 0.09 3.33 3.96 31.78 0.13 3.46 16 12 H 0.10 2.84 7.99 -2.39 -0.02 2.82 16 13 O -0.57 -19.35 13.39 -148.98 -1.99 -21.35 16 14 C 0.15 5.86 3.04 46.38 0.14 6.00 16 15 H 0.06 3.00 7.73 -2.39 -0.02 2.98 16 16 N -0.70 -20.21 5.23 -435.99 -2.28 -22.49 16 17 C 0.51 15.20 7.83 87.66 0.69 15.88 16 18 O -0.59 -23.64 15.73 -3.04 -0.05 -23.69 16 19 C -0.12 -2.43 5.61 29.85 0.17 -2.26 16 20 C -0.11 -2.28 4.07 30.59 0.12 -2.15 16 21 C 0.08 1.26 3.51 31.07 0.11 1.37 16 22 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 23 C -0.15 -1.90 6.56 31.91 0.21 -1.69 16 24 C -0.15 -1.49 7.16 32.10 0.23 -1.26 16 25 C 0.04 0.54 7.78 72.65 0.57 1.11 16 26 O -0.40 -7.43 10.64 -148.98 -1.59 -9.01 16 27 C 0.13 5.84 6.93 86.85 0.60 6.45 16 28 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 29 H 0.02 1.12 7.30 -2.39 -0.02 1.10 16 30 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 31 H 0.40 9.92 9.12 -74.05 -0.68 9.24 16 32 H 0.42 8.64 8.52 -92.71 -0.79 7.85 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.98 7.89 -2.39 -0.02 1.96 16 35 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 36 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.07 1.01 7.85 -2.39 -0.02 0.99 16 38 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -77.41 356.42 -1.73 -79.14 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.46 Total: 22.54 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 4.74 Total: 18.66 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -4.41 Total: -114.72 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -3.63 Total: -54.05 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.41 -1.73 -79.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191167381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.805 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds