Wall clock time and date at job start Tue Mar 31 2020 04:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99601 * 2 1 4 4 H 1.48505 * 109.47059 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47330 * 29.99765 * 3 2 1 6 6 H 1.48504 * 109.47105 * 149.99963 * 3 2 1 7 7 C 1.38815 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99741 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99797 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46908 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46623 * 60.00720 * 11 10 9 13 13 C 1.54802 * 109.46481 * 180.02562 * 11 10 9 14 14 N 1.45126 * 109.52800 * 187.89361 * 13 11 10 15 15 C 1.34776 * 118.75873 * 90.42354 * 14 13 11 16 16 O 1.21284 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00407 * 180.02562 * 15 14 13 18 18 H 1.09006 * 109.86516 * 304.29641 * 17 15 14 19 19 C 1.54101 * 109.87995 * 65.30469 * 17 15 14 20 20 C 1.54805 * 104.18799 * 121.45682 * 19 17 15 21 21 C 1.54995 * 102.09274 * 20.87974 * 20 19 17 22 22 O 1.43737 * 109.88119 * 183.29600 * 17 15 14 23 23 C 1.47503 * 122.48598 * 270.70232 * 14 13 11 24 24 C 1.53580 * 111.02517 * 41.63202 * 23 14 13 25 25 C 1.51533 * 109.58138 * 39.97969 * 24 23 14 26 26 O 1.38012 * 109.46711 * 300.00792 * 11 10 9 27 27 H 0.96995 * 120.00241 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00202 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47203 * 59.99840 * 10 9 7 30 30 H 1.08992 * 109.46847 * 299.99165 * 10 9 7 31 31 H 1.09002 * 109.46627 * 67.87480 * 13 11 10 32 32 H 1.08999 * 109.45083 * 307.90149 * 13 11 10 33 33 H 1.09006 * 110.48738 * 240.13466 * 19 17 15 34 34 H 1.08995 * 110.48569 * 2.77909 * 19 17 15 35 35 H 1.08998 * 110.90623 * 139.08013 * 20 19 17 36 36 H 1.08997 * 110.90891 * 262.68442 * 20 19 17 37 37 H 1.09001 * 110.61247 * 81.47587 * 21 20 19 38 38 H 1.08998 * 110.61687 * 204.31597 * 21 20 19 39 39 H 1.09003 * 109.17000 * 162.02964 * 23 14 13 40 40 H 1.08998 * 109.17054 * 281.23390 * 23 14 13 41 41 H 1.09001 * 109.45592 * 279.94004 * 24 23 14 42 42 H 1.09007 * 109.45012 * 160.01140 * 24 23 14 43 43 H 1.08998 * 109.59144 * 148.81979 * 25 24 23 44 44 H 1.08998 * 109.70743 * 28.45746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2022 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6165 -2.1911 0.0011 12 1 5.8797 -1.6197 0.8911 13 6 6.3905 -3.5318 0.0004 14 7 7.8063 -3.2746 0.1883 15 6 8.3002 -3.2500 1.4420 16 8 7.5647 -3.4411 2.3873 17 6 9.7661 -2.9849 1.6695 18 1 10.3638 -3.7043 1.1096 19 6 10.1152 -1.5523 1.2219 20 6 10.6866 -0.8851 2.4966 21 6 11.1039 -2.1124 3.3462 22 8 10.0690 -3.0837 3.0711 23 6 8.7243 -3.0333 -0.9408 24 6 8.0755 -2.1225 -1.9935 25 6 7.2898 -1.0267 -1.3021 26 8 5.9498 -1.4673 -1.1257 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3620 0.0007 29 1 3.8492 -3.0422 -0.8891 30 1 3.8487 -3.0424 0.8908 31 1 6.2368 -4.0395 -0.9518 32 1 6.0252 -4.1621 0.8112 33 1 10.8662 -1.5718 0.4320 34 1 9.2202 -1.0289 0.8857 35 1 11.5509 -0.2657 2.2572 36 1 9.9206 -0.3013 3.0067 37 1 12.0755 -2.4886 3.0257 38 1 11.1230 -1.8572 4.4057 39 1 9.6327 -2.5595 -0.5686 40 1 8.9823 -3.9865 -1.4024 41 1 7.4043 -2.7112 -2.6189 42 1 8.8517 -1.6759 -2.6150 43 1 7.3008 -0.1261 -1.9159 44 1 7.7351 -0.8122 -0.3306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199785755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:21 Heat of formation + Delta-G solvation = -91.365742 kcal Electronic energy + Delta-G solvation = -25861.772702 eV Core-core repulsion = 22201.461384 eV Total energy + Delta-G solvation = -3660.311318 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12975 -39.46984 -38.09618 -35.87740 -34.75008 -32.99423 -32.52049 -31.14678 -30.60347 -28.80778 -26.80142 -25.44947 -23.76166 -22.37831 -22.22014 -21.53853 -21.00789 -19.43383 -17.94663 -17.57234 -16.98665 -16.65730 -16.46492 -15.88047 -15.65094 -15.38887 -14.59140 -14.39385 -14.26911 -14.12234 -13.91936 -13.57454 -13.33535 -12.94563 -12.63646 -12.53703 -12.26403 -12.18013 -12.00424 -11.88583 -11.71786 -11.45617 -11.30592 -11.15997 -10.88929 -10.80214 -10.44339 -10.32054 -10.06945 -9.61044 -9.54520 -9.51018 -8.82763 -8.67274 -7.13721 -5.68881 -3.03056 2.39750 2.55839 3.44981 3.49137 3.51208 3.54661 3.80229 3.95304 4.12274 4.32797 4.46056 4.52377 4.58634 4.67895 4.74397 4.80374 4.87539 5.05631 5.08011 5.14951 5.21489 5.26524 5.29941 5.34904 5.39982 5.46153 5.52349 5.61132 5.61763 5.69705 5.81995 5.87107 5.96008 6.01815 6.28676 6.46626 6.59437 6.69825 7.08951 7.83550 8.01155 8.07548 8.50287 9.30150 10.02662 10.23746 11.49711 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004053 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.646156 B = 6905.964614 C = 7120.632987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.084 3.916 12 H 0.051 0.949 13 C 0.083 3.917 14 N -0.609 5.609 15 C 0.505 3.495 16 O -0.509 6.509 17 C 0.062 3.938 18 H 0.093 0.907 19 C -0.151 4.151 20 C -0.154 4.154 21 C 0.044 3.956 22 O -0.347 6.347 23 C 0.096 3.904 24 C -0.166 4.166 25 C 0.071 3.929 26 O -0.370 6.370 27 H 0.259 0.741 28 H 0.364 0.636 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.051 -4.591 -1.799 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.069 0.931 13 C -0.041 4.041 14 N -0.344 5.344 15 C 0.291 3.709 16 O -0.382 6.382 17 C 0.000 4.000 18 H 0.111 0.889 19 C -0.188 4.188 20 C -0.192 4.192 21 C -0.033 4.033 22 O -0.265 6.265 23 C -0.027 4.027 24 C -0.204 4.204 25 C -0.006 4.006 26 O -0.289 6.289 27 H 0.069 0.931 28 H 0.197 0.803 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 28.181 -4.911 -1.256 28.633 hybrid contribution 1.002 1.262 -0.093 1.614 sum 29.183 -3.650 -1.349 29.441 Atomic orbital electron populations 1.69707 1.05065 1.25729 1.57952 1.24639 0.95212 0.97161 1.02169 0.86503 0.79122 0.84940 0.77741 1.21047 1.21864 1.20497 1.19073 0.80565 0.94797 1.42592 0.89164 1.42544 1.03891 1.02093 1.90989 1.20599 0.85539 0.90155 0.99421 1.22346 0.96450 0.90722 0.88083 0.93148 1.22408 0.78932 0.99016 1.03706 1.47874 1.09320 1.71498 1.05711 1.20576 0.89832 0.77459 0.83040 1.90761 1.59789 1.46776 1.40922 1.22640 0.93755 0.98162 0.85449 0.88939 1.23083 1.02565 0.94046 0.99154 1.23159 1.01932 0.98510 0.95604 1.23678 0.91075 0.87401 1.01132 1.89072 1.56652 1.58584 1.22154 1.22192 0.92628 1.00128 0.87725 1.22500 1.01028 0.98528 0.98391 1.22183 0.83078 0.96058 0.99295 1.86426 1.27024 1.71980 1.43424 0.93145 0.80290 0.94641 0.93857 0.89467 0.88606 0.89239 0.89729 0.89568 0.89965 0.91797 0.88395 0.89590 0.91196 0.89647 0.89576 0.89256 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.36 13.97 55.49 0.78 -29.58 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 23.24 27.74 -169.99 -4.71 18.53 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.75 -19.18 5.29 -59.91 -0.32 -19.50 16 10 C 0.17 3.54 5.95 -4.04 -0.02 3.52 16 11 C 0.08 1.44 2.73 -25.78 -0.07 1.37 16 12 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.08 1.15 4.86 -3.83 -0.02 1.13 16 14 N -0.61 -7.14 2.19 -172.47 -0.38 -7.52 16 15 C 0.50 6.94 6.83 -10.99 -0.08 6.87 16 16 O -0.51 -9.52 15.96 -14.02 -0.22 -9.74 16 17 C 0.06 0.62 2.95 -27.31 -0.08 0.54 16 18 H 0.09 0.70 7.86 -51.93 -0.41 0.29 16 19 C -0.15 -1.09 4.77 -25.21 -0.12 -1.21 16 20 C -0.15 -1.07 7.16 -24.73 -0.18 -1.25 16 21 C 0.04 0.34 7.72 38.21 0.29 0.64 16 22 O -0.35 -4.31 10.75 -54.80 -0.59 -4.90 16 23 C 0.10 0.73 5.62 -3.19 -0.02 0.71 16 24 C -0.17 -1.36 5.78 -27.17 -0.16 -1.52 16 25 C 0.07 0.82 6.37 36.42 0.23 1.05 16 26 O -0.37 -6.12 9.18 -26.52 -0.24 -6.36 16 27 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 28 H 0.36 9.27 5.39 -40.82 -0.22 9.05 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 32 H 0.10 1.45 7.28 -51.93 -0.38 1.07 16 33 H 0.09 0.37 7.44 -51.93 -0.39 -0.01 16 34 H 0.08 0.73 5.71 -51.93 -0.30 0.43 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.48 4.00 -51.93 -0.21 0.27 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.53 5.65 -51.93 -0.29 0.24 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -37.62 339.77 -7.88 -45.51 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.85 Total: 3.89 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.47 Total: 4.55 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.08 Total: -56.60 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.06 Total: -21.00 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.62 -7.88 -45.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199785755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.856 kcal (2) G-P(sol) polarization free energy of solvation -37.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds