Wall clock time and date at job start Tue Mar 31 2020 04:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99601 * 2 1 4 4 H 1.48505 * 109.47059 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47330 * 29.99765 * 3 2 1 6 6 H 1.48504 * 109.47105 * 149.99963 * 3 2 1 7 7 C 1.38815 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99741 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99797 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46908 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46623 * 60.00720 * 11 10 9 13 13 C 1.54802 * 109.46481 * 180.02562 * 11 10 9 14 14 N 1.45126 * 109.52800 * 187.89361 * 13 11 10 15 15 C 1.34776 * 118.75873 * 90.42354 * 14 13 11 16 16 O 1.21284 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00407 * 180.02562 * 15 14 13 18 18 H 1.09006 * 109.86516 * 304.29641 * 17 15 14 19 19 C 1.54101 * 109.87995 * 65.30469 * 17 15 14 20 20 C 1.54805 * 104.18799 * 121.45682 * 19 17 15 21 21 C 1.54995 * 102.09274 * 20.87974 * 20 19 17 22 22 O 1.43737 * 109.88119 * 183.29600 * 17 15 14 23 23 C 1.47503 * 122.48598 * 270.70232 * 14 13 11 24 24 C 1.53580 * 111.02517 * 41.63202 * 23 14 13 25 25 C 1.51533 * 109.58138 * 39.97969 * 24 23 14 26 26 O 1.38012 * 109.46711 * 300.00792 * 11 10 9 27 27 H 0.96995 * 120.00241 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00202 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47203 * 59.99840 * 10 9 7 30 30 H 1.08992 * 109.46847 * 299.99165 * 10 9 7 31 31 H 1.09002 * 109.46627 * 67.87480 * 13 11 10 32 32 H 1.08999 * 109.45083 * 307.90149 * 13 11 10 33 33 H 1.09006 * 110.48738 * 240.13466 * 19 17 15 34 34 H 1.08995 * 110.48569 * 2.77909 * 19 17 15 35 35 H 1.08998 * 110.90623 * 139.08013 * 20 19 17 36 36 H 1.08997 * 110.90891 * 262.68442 * 20 19 17 37 37 H 1.09001 * 110.61247 * 81.47587 * 21 20 19 38 38 H 1.08998 * 110.61687 * 204.31597 * 21 20 19 39 39 H 1.09003 * 109.17000 * 162.02964 * 23 14 13 40 40 H 1.08998 * 109.17054 * 281.23390 * 23 14 13 41 41 H 1.09001 * 109.45592 * 279.94004 * 24 23 14 42 42 H 1.09007 * 109.45012 * 160.01140 * 24 23 14 43 43 H 1.08998 * 109.59144 * 148.81979 * 25 24 23 44 44 H 1.08998 * 109.70743 * 28.45746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2022 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6165 -2.1911 0.0011 12 1 5.8797 -1.6197 0.8911 13 6 6.3905 -3.5318 0.0004 14 7 7.8063 -3.2746 0.1883 15 6 8.3002 -3.2500 1.4420 16 8 7.5647 -3.4411 2.3873 17 6 9.7661 -2.9849 1.6695 18 1 10.3638 -3.7043 1.1096 19 6 10.1152 -1.5523 1.2219 20 6 10.6866 -0.8851 2.4966 21 6 11.1039 -2.1124 3.3462 22 8 10.0690 -3.0837 3.0711 23 6 8.7243 -3.0333 -0.9408 24 6 8.0755 -2.1225 -1.9935 25 6 7.2898 -1.0267 -1.3021 26 8 5.9498 -1.4673 -1.1257 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3620 0.0007 29 1 3.8492 -3.0422 -0.8891 30 1 3.8487 -3.0424 0.8908 31 1 6.2368 -4.0395 -0.9518 32 1 6.0252 -4.1621 0.8112 33 1 10.8662 -1.5718 0.4320 34 1 9.2202 -1.0289 0.8857 35 1 11.5509 -0.2657 2.2572 36 1 9.9206 -0.3013 3.0067 37 1 12.0755 -2.4886 3.0257 38 1 11.1230 -1.8572 4.4057 39 1 9.6327 -2.5595 -0.5686 40 1 8.9823 -3.9865 -1.4024 41 1 7.4043 -2.7112 -2.6189 42 1 8.8517 -1.6759 -2.6150 43 1 7.3008 -0.1261 -1.9159 44 1 7.7351 -0.8122 -0.3306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199785755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:21 Heat of formation + Delta-G solvation = -119.364466 kcal Electronic energy + Delta-G solvation = -25862.986818 eV Core-core repulsion = 22201.461384 eV Total energy + Delta-G solvation = -3661.525433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05899 -40.40631 -39.12697 -37.11818 -36.38133 -34.41221 -33.25629 -32.98273 -31.45177 -30.09392 -27.80455 -26.77308 -24.88424 -23.76077 -23.01499 -22.75890 -22.09106 -20.34567 -19.83571 -18.73011 -17.96665 -17.72090 -17.27118 -16.98064 -16.67839 -16.39232 -16.27390 -15.60074 -15.33579 -15.09793 -14.89197 -14.82425 -14.65033 -14.32769 -14.05396 -13.81995 -13.58773 -13.29281 -12.86768 -12.85092 -12.76300 -12.60456 -12.40008 -12.30076 -12.12839 -12.03721 -11.86428 -11.75206 -11.45521 -11.17840 -11.04753 -10.62222 -10.52279 -9.72805 -9.34630 -8.05817 -5.39207 1.33603 1.37731 1.41136 1.45123 1.68585 2.45655 2.64889 2.89283 3.24644 3.25465 3.42397 3.50795 3.75853 3.83623 3.89947 3.95906 3.99957 4.03502 4.18349 4.22492 4.24687 4.36015 4.40641 4.44790 4.63097 4.65387 4.69647 4.76821 4.81665 4.84754 4.88207 4.95793 5.02945 5.09493 5.11176 5.19394 5.45147 5.70186 5.74615 6.17440 6.20088 6.66841 7.02683 7.03872 7.78740 7.99641 9.15753 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004053 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.646156 B = 6905.964614 C = 7120.632987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.239 4.239 8 H 0.059 0.941 9 N -0.753 5.753 10 C 0.165 3.835 11 C 0.104 3.896 12 H 0.024 0.976 13 C 0.092 3.908 14 N -0.603 5.603 15 C 0.494 3.506 16 O -0.575 6.575 17 C 0.062 3.938 18 H 0.127 0.873 19 C -0.146 4.146 20 C -0.153 4.153 21 C 0.037 3.963 22 O -0.391 6.391 23 C 0.089 3.911 24 C -0.157 4.157 25 C 0.058 3.942 26 O -0.396 6.396 27 H 0.260 0.740 28 H 0.366 0.634 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.566 -3.687 -3.713 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.369 4.369 8 H 0.077 0.923 9 N -0.398 5.398 10 C 0.038 3.962 11 C 0.043 3.957 12 H 0.041 0.959 13 C -0.032 4.032 14 N -0.336 5.336 15 C 0.283 3.717 16 O -0.454 6.454 17 C 0.001 3.999 18 H 0.145 0.855 19 C -0.184 4.184 20 C -0.190 4.190 21 C -0.039 4.039 22 O -0.310 6.310 23 C -0.031 4.031 24 C -0.194 4.194 25 C -0.018 4.018 26 O -0.315 6.315 27 H 0.068 0.932 28 H 0.199 0.801 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 32.772 -4.022 -3.215 33.174 hybrid contribution -0.397 0.917 0.489 1.113 sum 32.375 -3.105 -2.726 32.637 Atomic orbital electron populations 1.69879 1.06963 1.26791 1.59589 1.25478 0.96156 1.01178 1.02440 0.85360 0.78124 0.79666 0.78305 1.19818 1.21704 1.18918 1.19078 0.82457 0.93791 1.41608 0.92290 1.42544 1.02544 1.03877 1.90883 1.20737 0.88177 0.88253 0.99046 1.21870 0.94056 0.92265 0.87470 0.95855 1.22116 0.80407 0.96783 1.03906 1.47982 1.08665 1.70323 1.06649 1.21501 0.91461 0.76051 0.82675 1.90725 1.61694 1.49909 1.43058 1.22865 0.90966 1.00864 0.85170 0.85523 1.23172 1.03146 0.91691 1.00376 1.23172 1.02432 0.98273 0.95151 1.23935 0.91283 0.87107 1.01545 1.89034 1.58232 1.60062 1.23701 1.22588 0.92411 1.01779 0.86337 1.22444 1.01424 0.97278 0.98302 1.22557 0.81183 0.97953 1.00059 1.86351 1.30426 1.72241 1.42520 0.93162 0.80093 0.94190 0.94628 0.87408 0.90648 0.84651 0.91263 0.86322 0.92427 0.88867 0.88616 0.86712 0.88638 0.90636 0.85553 0.87995 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.35 13.97 21.65 0.30 -65.05 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 3 Si 0.96 48.45 27.74 68.60 1.90 50.36 16 4 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.26 -12.55 6.52 99.48 0.65 -11.90 16 7 C -0.24 -14.64 10.47 84.04 0.88 -13.76 16 8 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.75 -39.25 5.29 -343.45 -1.82 -41.07 16 10 C 0.16 7.07 5.95 86.38 0.51 7.58 16 11 C 0.10 3.60 2.73 31.21 0.09 3.69 16 12 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 13 C 0.09 2.55 4.86 87.25 0.42 2.98 16 14 N -0.60 -13.12 2.19 -817.96 -1.79 -14.92 16 15 C 0.49 13.32 6.83 87.66 0.60 13.92 16 16 O -0.58 -22.58 15.96 15.67 0.25 -22.33 16 17 C 0.06 1.10 2.95 30.22 0.09 1.19 16 18 H 0.13 1.34 7.86 -2.38 -0.02 1.32 16 19 C -0.15 -1.56 4.77 31.58 0.15 -1.41 16 20 C -0.15 -1.69 7.16 31.89 0.23 -1.46 16 21 C 0.04 0.50 7.72 72.66 0.56 1.06 16 22 O -0.39 -9.36 10.75 -130.27 -1.40 -10.76 16 23 C 0.09 0.96 5.62 86.38 0.49 1.45 16 24 C -0.16 -1.87 5.78 30.31 0.18 -1.70 16 25 C 0.06 1.19 6.37 71.50 0.46 1.65 16 26 O -0.40 -12.68 9.18 -117.82 -1.08 -13.76 16 27 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 28 H 0.37 18.61 5.39 -92.71 -0.50 18.11 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16 32 H 0.08 2.40 7.28 -2.39 -0.02 2.38 16 33 H 0.14 0.22 7.44 -2.38 -0.02 0.20 16 34 H 0.07 0.99 5.71 -2.39 -0.01 0.97 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.12 0.60 4.00 -2.39 -0.01 0.59 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 1.12 8.01 -2.39 -0.02 1.11 16 42 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 0.96 5.65 -2.39 -0.01 0.94 16 Total: -1.00 -87.84 339.77 1.92 -85.92 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.44 Total: 19.76 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.11 Total: 11.85 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -3.31 Total: -121.04 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -2.23 Total: -46.84 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 1.90 Total: 50.36 kcal Total: -87.84 1.92 -85.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199785755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.447 kcal (2) G-P(sol) polarization free energy of solvation -87.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds