Wall clock time and date at job start Tue Mar 31 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72188 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72311 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72121 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46777 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46715 * 305.00624 * 11 10 9 13 13 C 1.54802 * 109.46618 * 185.01572 * 11 10 9 14 14 N 1.45127 * 109.53959 * 172.11501 * 13 11 10 15 15 C 1.34781 * 118.74999 * 269.29036 * 14 13 11 16 16 O 1.21277 * 120.00327 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99342 * 180.02562 * 15 14 13 18 18 H 1.09006 * 110.26943 * 305.62837 * 17 15 14 19 19 C 1.54940 * 110.31341 * 67.82947 * 17 15 14 20 20 C 1.55301 * 100.94192 * 155.36007 * 19 17 15 21 21 C 1.54379 * 102.25198 * 325.86621 * 20 19 17 22 22 O 1.43230 * 107.59250 * 21.35783 * 21 20 19 23 23 C 1.47500 * 122.48854 * 89.28415 * 14 13 11 24 24 C 1.53578 * 111.02497 * 318.37603 * 23 14 13 25 25 C 1.51533 * 109.58128 * 320.01884 * 24 23 14 26 26 O 1.38013 * 109.46940 * 65.00678 * 11 10 9 27 27 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 29 29 H 1.08992 * 109.47350 * 300.00438 * 10 9 7 30 30 H 1.08997 * 109.46726 * 60.00801 * 10 9 7 31 31 H 1.09006 * 109.45853 * 292.12719 * 13 11 10 32 32 H 1.08996 * 109.46322 * 52.08817 * 13 11 10 33 33 H 1.09004 * 111.12439 * 273.27552 * 19 17 15 34 34 H 1.08998 * 111.12438 * 37.43694 * 19 17 15 35 35 H 1.09003 * 110.84954 * 207.67501 * 20 19 17 36 36 H 1.09001 * 111.02686 * 84.13546 * 20 19 17 37 37 H 1.09009 * 109.82844 * 261.84515 * 21 20 19 38 38 H 1.08997 * 109.90667 * 140.91697 * 21 20 19 39 39 H 1.08999 * 109.17020 * 197.98165 * 23 14 13 40 40 H 1.09003 * 109.17116 * 78.77283 * 23 14 13 41 41 H 1.08999 * 109.45049 * 199.98704 * 24 23 14 42 42 H 1.08996 * 109.43444 * 80.04421 * 24 23 14 43 43 H 1.08993 * 109.58921 * 331.61668 * 25 24 23 44 44 H 1.08998 * 109.58866 * 211.17900 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0068 5 1 1.8967 2.3934 -1.2160 6 1 1.8865 2.3993 1.2091 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 6 1.0635 -4.8197 0.0097 12 1 0.3758 -4.7110 0.8484 13 6 1.8327 -6.1565 0.1432 14 7 0.8888 -7.2432 0.3289 15 6 0.5358 -7.5881 1.5831 16 8 1.0056 -6.9940 2.5304 17 6 -0.4417 -8.7127 1.8084 18 1 -1.3593 -8.5334 1.2479 19 6 0.1894 -10.0653 1.3926 20 6 -0.6339 -11.0544 2.2620 21 6 -0.8850 -10.2325 3.5444 22 8 -0.7314 -8.8486 3.2088 23 6 0.3012 -7.9843 -0.8029 24 6 -0.0852 -7.0318 -1.9440 25 6 -0.6864 -5.7660 -1.3674 26 8 0.3516 -4.8144 -1.1727 27 1 -0.4851 -0.8400 -0.0004 28 1 0.3554 -2.3880 0.0015 29 1 2.6879 -3.7166 -0.8758 30 1 2.6810 -3.7127 0.9041 31 1 2.4152 -6.3322 -0.7612 32 1 2.5020 -6.1061 1.0020 33 1 0.0405 -10.2583 0.3302 34 1 1.2475 -10.1013 1.6520 35 1 -0.0550 -11.9511 2.4830 36 1 -1.5749 -11.3122 1.7760 37 1 -0.1599 -10.5102 4.3095 38 1 -1.8957 -10.4143 3.9098 39 1 -0.5887 -8.5128 -0.4613 40 1 1.0272 -8.7088 -1.1719 41 1 -0.8149 -7.5181 -2.5914 42 1 0.8033 -6.7805 -2.5232 43 1 -1.1615 -5.9893 -0.4123 44 1 -1.4253 -5.3638 -2.0604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199785761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:27 Heat of formation + Delta-G solvation = -98.113889 kcal Electronic energy + Delta-G solvation = -25524.146423 eV Core-core repulsion = 21863.542484 eV Total energy + Delta-G solvation = -3660.603939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01636 -39.49559 -38.07420 -35.81385 -34.78626 -33.04267 -32.58699 -30.91632 -30.52402 -28.39259 -26.67582 -25.22286 -23.64648 -22.44368 -22.18312 -21.69226 -21.06492 -19.35712 -18.11310 -17.29386 -16.95560 -16.52559 -16.38564 -15.94548 -15.74450 -15.22263 -14.91802 -14.25109 -14.12570 -14.01762 -13.65804 -13.54034 -13.46867 -13.03157 -12.85162 -12.51867 -12.34098 -12.16545 -12.02169 -11.85255 -11.59092 -11.43738 -11.40175 -11.01617 -10.62675 -10.44782 -10.32014 -10.22127 -9.97018 -9.54842 -9.48119 -9.12455 -8.78711 -8.61666 -6.87724 -5.99646 -2.97679 2.38400 2.60072 3.50056 3.58472 3.66145 3.75413 3.86863 3.90672 4.12871 4.33124 4.48409 4.57855 4.62588 4.67460 4.74826 4.80859 4.85722 5.13805 5.16537 5.21006 5.24452 5.26895 5.34701 5.37076 5.39105 5.41842 5.54543 5.60184 5.71894 5.76752 5.89183 5.92082 6.03418 6.17499 6.37383 6.58192 6.62915 6.74201 7.11402 7.90148 7.93859 8.03650 8.87672 9.35361 10.21879 10.37800 11.49576 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.003382 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.373619 B = 8277.507947 C = 8789.095688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.047 4.047 3 Si 1.087 2.913 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.329 4.329 8 H 0.065 0.935 9 N -0.738 5.738 10 C 0.172 3.828 11 C 0.087 3.913 12 H 0.051 0.949 13 C 0.083 3.917 14 N -0.607 5.607 15 C 0.505 3.495 16 O -0.509 6.509 17 C 0.065 3.935 18 H 0.096 0.904 19 C -0.147 4.147 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.353 6.353 23 C 0.103 3.897 24 C -0.167 4.167 25 C 0.072 3.928 26 O -0.370 6.370 27 H 0.256 0.744 28 H 0.370 0.630 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -27.639 -1.818 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.245 4.245 3 Si 0.919 3.081 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.383 5.383 10 C 0.044 3.956 11 C 0.027 3.973 12 H 0.069 0.931 13 C -0.040 4.040 14 N -0.343 5.343 15 C 0.291 3.709 16 O -0.383 6.383 17 C 0.004 3.996 18 H 0.113 0.887 19 C -0.184 4.184 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.271 6.271 23 C -0.020 4.020 24 C -0.206 4.206 25 C -0.005 4.005 26 O -0.288 6.288 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.909 -25.373 -1.276 25.477 hybrid contribution -0.228 -2.264 -0.024 2.276 sum -2.137 -27.638 -1.300 27.751 Atomic orbital electron populations 1.70782 1.06049 1.28522 1.53828 1.25778 0.97110 1.00947 1.00642 0.83129 0.73504 0.74998 0.76515 1.22146 1.22081 1.22069 1.20099 0.92026 0.85774 1.48098 0.91698 1.42237 1.05019 1.00524 1.90559 1.20540 0.92286 0.84123 0.98649 1.22304 0.93859 0.94192 0.86980 0.93090 1.22414 0.92007 0.86109 1.03512 1.47876 1.45582 1.35346 1.05490 1.20526 0.82673 0.84607 0.83068 1.90762 1.53428 1.53210 1.40883 1.22856 0.97319 0.94446 0.85017 0.88676 1.23326 1.01170 0.92463 1.01475 1.23130 1.01014 0.99089 0.95905 1.23225 1.01706 0.80895 0.97126 1.88573 1.91634 1.24455 1.22448 1.22124 0.98299 0.94274 0.87259 1.22523 1.03081 0.97100 0.97857 1.22128 0.89934 0.88516 0.99895 1.86430 1.48314 1.55681 1.38371 0.93288 0.79715 0.95402 0.94655 0.89677 0.88760 0.88827 0.89636 0.89504 0.90027 0.90952 0.90867 0.90071 0.91188 0.89543 0.89779 0.93539 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.80 13.70 55.49 0.76 -30.04 16 2 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 3 Si 1.09 27.26 29.92 -169.99 -5.09 22.17 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.33 -9.90 9.99 -15.06 -0.15 -10.05 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.74 -20.33 5.54 -59.91 -0.33 -20.66 16 10 C 0.17 3.83 5.92 -4.04 -0.02 3.80 16 11 C 0.09 1.60 2.68 -25.78 -0.07 1.54 16 12 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.08 1.22 4.86 -3.83 -0.02 1.20 16 14 N -0.61 -7.49 2.19 -172.47 -0.38 -7.87 16 15 C 0.51 7.25 7.04 -10.98 -0.08 7.18 16 16 O -0.51 -9.90 15.98 -13.76 -0.22 -10.12 16 17 C 0.06 0.69 2.89 -26.86 -0.08 0.61 16 18 H 0.10 0.83 7.12 -51.93 -0.37 0.46 16 19 C -0.15 -1.00 5.82 -24.49 -0.14 -1.14 16 20 C -0.15 -0.84 7.02 -24.79 -0.17 -1.02 16 21 C 0.05 0.39 7.79 37.88 0.30 0.69 16 22 O -0.35 -4.63 10.61 -54.55 -0.58 -5.21 16 23 C 0.10 0.83 4.90 -3.19 -0.02 0.81 16 24 C -0.17 -1.50 5.78 -27.17 -0.16 -1.66 16 25 C 0.07 0.93 6.37 36.42 0.23 1.17 16 26 O -0.37 -6.63 9.38 -26.53 -0.25 -6.87 16 27 H 0.26 8.29 6.77 -40.82 -0.28 8.01 16 28 H 0.37 10.55 6.49 -40.82 -0.26 10.29 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 32 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 33 H 0.09 0.40 6.73 -51.93 -0.35 0.05 16 34 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.48 4.99 -51.93 -0.26 0.22 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 43 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -38.45 345.40 -8.32 -46.77 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.97 Total: 5.05 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.47 Total: 1.57 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.05 Total: -58.57 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.05 Total: -22.20 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -5.09 Total: 22.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.45 -8.32 -46.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199785761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.343 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds