Wall clock time and date at job start Tue Mar 31 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72188 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72311 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72121 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46777 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46715 * 305.00624 * 11 10 9 13 13 C 1.54802 * 109.46618 * 185.01572 * 11 10 9 14 14 N 1.45127 * 109.53959 * 172.11501 * 13 11 10 15 15 C 1.34781 * 118.74999 * 269.29036 * 14 13 11 16 16 O 1.21277 * 120.00327 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99342 * 180.02562 * 15 14 13 18 18 H 1.09006 * 110.26943 * 305.62837 * 17 15 14 19 19 C 1.54940 * 110.31341 * 67.82947 * 17 15 14 20 20 C 1.55301 * 100.94192 * 155.36007 * 19 17 15 21 21 C 1.54379 * 102.25198 * 325.86621 * 20 19 17 22 22 O 1.43230 * 107.59250 * 21.35783 * 21 20 19 23 23 C 1.47500 * 122.48854 * 89.28415 * 14 13 11 24 24 C 1.53578 * 111.02497 * 318.37603 * 23 14 13 25 25 C 1.51533 * 109.58128 * 320.01884 * 24 23 14 26 26 O 1.38013 * 109.46940 * 65.00678 * 11 10 9 27 27 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 29 29 H 1.08992 * 109.47350 * 300.00438 * 10 9 7 30 30 H 1.08997 * 109.46726 * 60.00801 * 10 9 7 31 31 H 1.09006 * 109.45853 * 292.12719 * 13 11 10 32 32 H 1.08996 * 109.46322 * 52.08817 * 13 11 10 33 33 H 1.09004 * 111.12439 * 273.27552 * 19 17 15 34 34 H 1.08998 * 111.12438 * 37.43694 * 19 17 15 35 35 H 1.09003 * 110.84954 * 207.67501 * 20 19 17 36 36 H 1.09001 * 111.02686 * 84.13546 * 20 19 17 37 37 H 1.09009 * 109.82844 * 261.84515 * 21 20 19 38 38 H 1.08997 * 109.90667 * 140.91697 * 21 20 19 39 39 H 1.08999 * 109.17020 * 197.98165 * 23 14 13 40 40 H 1.09003 * 109.17116 * 78.77283 * 23 14 13 41 41 H 1.08999 * 109.45049 * 199.98704 * 24 23 14 42 42 H 1.08996 * 109.43444 * 80.04421 * 24 23 14 43 43 H 1.08993 * 109.58921 * 331.61668 * 25 24 23 44 44 H 1.08998 * 109.58866 * 211.17900 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0068 5 1 1.8967 2.3934 -1.2160 6 1 1.8865 2.3993 1.2091 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 6 1.0635 -4.8197 0.0097 12 1 0.3758 -4.7110 0.8484 13 6 1.8327 -6.1565 0.1432 14 7 0.8888 -7.2432 0.3289 15 6 0.5358 -7.5881 1.5831 16 8 1.0056 -6.9940 2.5304 17 6 -0.4417 -8.7127 1.8084 18 1 -1.3593 -8.5334 1.2479 19 6 0.1894 -10.0653 1.3926 20 6 -0.6339 -11.0544 2.2620 21 6 -0.8850 -10.2325 3.5444 22 8 -0.7314 -8.8486 3.2088 23 6 0.3012 -7.9843 -0.8029 24 6 -0.0852 -7.0318 -1.9440 25 6 -0.6864 -5.7660 -1.3674 26 8 0.3516 -4.8144 -1.1727 27 1 -0.4851 -0.8400 -0.0004 28 1 0.3554 -2.3880 0.0015 29 1 2.6879 -3.7166 -0.8758 30 1 2.6810 -3.7127 0.9041 31 1 2.4152 -6.3322 -0.7612 32 1 2.5020 -6.1061 1.0020 33 1 0.0405 -10.2583 0.3302 34 1 1.2475 -10.1013 1.6520 35 1 -0.0550 -11.9511 2.4830 36 1 -1.5749 -11.3122 1.7760 37 1 -0.1599 -10.5102 4.3095 38 1 -1.8957 -10.4143 3.9098 39 1 -0.5887 -8.5128 -0.4613 40 1 1.0272 -8.7088 -1.1719 41 1 -0.8149 -7.5181 -2.5914 42 1 0.8033 -6.7805 -2.5232 43 1 -1.1615 -5.9893 -0.4123 44 1 -1.4253 -5.3638 -2.0604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199785761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:27 Heat of formation + Delta-G solvation = -126.566410 kcal Electronic energy + Delta-G solvation = -25525.380217 eV Core-core repulsion = 21863.542484 eV Total energy + Delta-G solvation = -3661.837733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02306 -40.49270 -39.19360 -37.19091 -36.50070 -34.51367 -33.24331 -32.62531 -31.46212 -29.77816 -27.73783 -26.66136 -25.19050 -23.97948 -22.81461 -22.63568 -22.39653 -20.31915 -19.44095 -18.97977 -18.04684 -17.73501 -17.62477 -16.92014 -16.73748 -16.47095 -16.00225 -15.73941 -15.58095 -15.06244 -15.02603 -14.89649 -14.56435 -14.20881 -14.06132 -13.78358 -13.41806 -13.07940 -12.89218 -12.79689 -12.69830 -12.63407 -12.39441 -12.29049 -12.05450 -11.89005 -11.85637 -11.60597 -11.33943 -11.10829 -11.01271 -10.67409 -10.47992 -9.77593 -9.16845 -8.44973 -5.37979 1.34529 1.56182 1.65510 1.69541 1.81519 2.60099 2.69131 2.80537 3.20689 3.37361 3.47197 3.48571 3.75328 3.79517 3.89294 3.93901 3.97902 4.04892 4.07173 4.19053 4.20315 4.31489 4.36906 4.41765 4.58759 4.63427 4.69395 4.75416 4.75977 4.77804 4.84739 4.95097 4.96125 5.05669 5.12897 5.16543 5.39935 5.52779 5.84349 6.16817 6.43563 6.62341 6.98742 7.03808 7.93426 8.06622 9.06939 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.003382 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.373619 B = 8277.507947 C = 8789.095688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.107 4.107 3 Si 1.139 2.861 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.338 4.338 8 H 0.069 0.931 9 N -0.753 5.753 10 C 0.168 3.832 11 C 0.105 3.895 12 H 0.013 0.987 13 C 0.096 3.904 14 N -0.601 5.601 15 C 0.495 3.505 16 O -0.577 6.577 17 C 0.063 3.937 18 H 0.120 0.880 19 C -0.139 4.139 20 C -0.141 4.141 21 C 0.034 3.966 22 O -0.399 6.399 23 C 0.094 3.906 24 C -0.156 4.156 25 C 0.060 3.940 26 O -0.398 6.398 27 H 0.241 0.759 28 H 0.359 0.641 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -30.487 -3.856 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.298 4.298 3 Si 0.962 3.038 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.469 4.469 8 H 0.087 0.913 9 N -0.397 5.397 10 C 0.041 3.959 11 C 0.045 3.955 12 H 0.031 0.969 13 C -0.029 4.029 14 N -0.335 5.335 15 C 0.284 3.716 16 O -0.456 6.456 17 C 0.002 3.998 18 H 0.137 0.863 19 C -0.176 4.176 20 C -0.178 4.178 21 C -0.042 4.042 22 O -0.319 6.319 23 C -0.026 4.026 24 C -0.194 4.194 25 C -0.016 4.016 26 O -0.317 6.317 27 H 0.051 0.949 28 H 0.191 0.809 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.856 -28.309 -3.360 28.569 hybrid contribution -0.298 -1.435 0.605 1.586 sum -2.154 -29.745 -2.756 29.949 Atomic orbital electron populations 1.70916 1.07240 1.27712 1.56277 1.27431 0.97156 1.04965 1.00246 0.82499 0.73680 0.70900 0.76672 1.19424 1.21294 1.21684 1.20500 0.92480 0.86962 1.46943 0.91262 1.42465 1.04778 1.01856 1.90644 1.20680 0.93099 0.83697 0.98402 1.21854 0.92765 0.94819 0.86083 0.96890 1.22091 0.91894 0.85135 1.03777 1.47984 1.44684 1.34349 1.06475 1.21441 0.82490 0.84930 0.82731 1.90723 1.56053 1.55713 1.43090 1.23074 0.97277 0.94763 0.84660 0.86310 1.23385 1.00318 0.90064 1.03846 1.23141 1.02196 0.98666 0.93837 1.23486 1.02318 0.79540 0.98856 1.88534 1.91805 1.27424 1.24124 1.22573 1.00345 0.94162 0.85476 1.22457 1.03569 0.95103 0.98298 1.22478 0.89218 0.89794 1.00072 1.86348 1.49652 1.58234 1.37453 0.94857 0.80902 0.94683 0.95081 0.87143 0.90646 0.85080 0.90911 0.87696 0.87646 0.91570 0.89690 0.87116 0.87694 0.85486 0.90397 0.94291 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.09 13.70 21.65 0.30 -64.80 16 2 C -0.11 -6.68 5.50 84.86 0.47 -6.21 16 3 Si 1.14 55.02 29.92 68.60 2.05 57.07 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.34 -20.75 9.99 84.04 0.84 -19.92 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.75 -43.20 5.54 -343.44 -1.90 -45.11 16 10 C 0.17 7.78 5.92 86.38 0.51 8.29 16 11 C 0.11 4.06 2.68 31.21 0.08 4.14 16 12 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 13 C 0.10 2.82 4.86 87.25 0.42 3.25 16 14 N -0.60 -14.09 2.19 -817.95 -1.79 -15.89 16 15 C 0.50 14.30 7.04 87.66 0.62 14.91 16 16 O -0.58 -23.89 15.98 15.45 0.25 -23.65 16 17 C 0.06 1.23 2.89 30.51 0.09 1.32 16 18 H 0.12 1.72 7.12 -2.38 -0.02 1.70 16 19 C -0.14 -1.39 5.82 32.05 0.19 -1.20 16 20 C -0.14 -1.02 7.02 31.85 0.22 -0.80 16 21 C 0.03 0.52 7.79 72.45 0.56 1.09 16 22 O -0.40 -10.53 10.61 -130.51 -1.38 -11.91 16 23 C 0.09 1.12 4.90 86.38 0.42 1.55 16 24 C -0.16 -2.21 5.78 30.31 0.18 -2.04 16 25 C 0.06 1.49 6.37 71.50 0.46 1.95 16 26 O -0.40 -14.46 9.38 -117.84 -1.11 -15.57 16 27 H 0.24 16.33 6.77 -92.71 -0.63 15.70 16 28 H 0.36 21.68 6.49 -92.71 -0.60 21.08 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 2.69 8.11 -2.38 -0.02 2.67 16 32 H 0.08 2.52 7.27 -2.39 -0.02 2.51 16 33 H 0.13 0.32 6.73 -2.39 -0.02 0.30 16 34 H 0.07 0.95 8.05 -2.39 -0.02 0.93 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 0.71 4.99 -2.39 -0.01 0.70 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.28 8.01 -2.39 -0.02 1.26 16 43 H 0.04 1.01 7.40 -2.39 -0.02 1.00 16 44 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -90.42 345.40 2.01 -88.41 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.54 Total: 25.10 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.06 Total: 6.33 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -3.40 Total: -125.79 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.24 Total: -51.13 kcal Atomic # 14 Polarization: 55.02 SS G_CDS: 2.05 Total: 57.07 kcal Total: -90.42 2.01 -88.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199785761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.153 kcal (2) G-P(sol) polarization free energy of solvation -90.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds