Wall clock time and date at job start Tue Mar 31 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00513 * 2 1 4 4 H 1.48500 * 109.47420 * 270.00371 * 3 2 1 5 5 H 1.48498 * 109.46873 * 29.99992 * 3 2 1 6 6 H 1.48496 * 109.47342 * 149.99701 * 3 2 1 7 7 C 1.38816 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00031 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47266 * 179.97438 * 10 9 7 12 12 C 1.53038 * 109.46255 * 184.99560 * 11 10 9 13 13 C 1.53190 * 109.31366 * 178.60957 * 12 11 10 14 14 N 1.46925 * 108.77268 * 54.64076 * 13 12 11 15 15 C 1.34779 * 120.63363 * 126.36267 * 14 13 12 16 16 O 1.21279 * 119.99537 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00316 * 179.97438 * 15 14 13 18 18 H 1.09003 * 109.57684 * 54.84022 * 17 15 14 19 19 C 1.53139 * 109.52216 * 294.67927 * 17 15 14 20 20 O 1.43080 * 109.14586 * 184.78335 * 19 17 15 21 21 C 1.43075 * 113.59203 * 57.95273 * 20 19 17 22 22 C 1.53136 * 109.15053 * 302.04275 * 21 20 19 23 23 O 1.43075 * 109.52422 * 175.00406 * 17 15 14 24 24 C 1.46924 * 118.73756 * 306.64169 * 14 13 12 25 25 C 1.52760 * 109.01109 * 53.30948 * 24 14 13 26 26 H 0.96999 * 119.99477 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47054 * 59.99734 * 10 9 7 29 29 H 1.09000 * 109.47024 * 299.99879 * 10 9 7 30 30 H 1.09000 * 109.46013 * 304.97200 * 11 10 9 31 31 H 1.09001 * 109.49097 * 58.66400 * 12 11 10 32 32 H 1.08999 * 109.52883 * 298.58628 * 12 11 10 33 33 H 1.08993 * 109.59164 * 294.85268 * 13 12 11 34 34 H 1.09005 * 109.70440 * 174.49358 * 13 12 11 35 35 H 1.09000 * 109.52721 * 304.67969 * 19 17 15 36 36 H 1.08997 * 109.52924 * 64.88247 * 19 17 15 37 37 H 1.09009 * 109.52391 * 182.14068 * 21 20 19 38 38 H 1.08999 * 109.52604 * 61.95413 * 21 20 19 39 39 H 1.08997 * 109.53109 * 295.41227 * 22 21 20 40 40 H 1.09001 * 109.57948 * 175.24715 * 22 21 20 41 41 H 1.09001 * 109.58533 * 173.14271 * 24 14 13 42 42 H 1.09006 * 109.58567 * 293.56675 * 24 14 13 43 43 H 1.09001 * 109.56567 * 185.55272 * 25 24 14 44 44 H 1.08996 * 109.38632 * 65.51577 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1916 -0.0009 12 6 6.3802 -3.5116 -0.1277 13 6 7.8847 -3.2250 -0.1621 14 7 8.2422 -2.4324 1.0223 15 6 9.2263 -2.8384 1.8488 16 8 9.8264 -3.8667 1.6179 17 6 9.5817 -2.0141 3.0593 18 1 8.6899 -1.8502 3.6643 19 6 10.1508 -0.6650 2.6107 20 8 10.5886 0.0654 3.7605 21 6 11.5727 -0.6245 4.5366 22 6 11.0036 -1.9735 4.9852 23 8 10.5659 -2.7040 3.8355 24 6 7.5024 -1.1920 1.2918 25 6 6.0059 -1.4984 1.3068 26 1 -0.4849 0.8401 0.0004 27 1 3.8647 -0.3623 0.0004 28 1 3.8490 -3.0416 -0.8918 29 1 3.8484 -3.0436 0.8881 30 1 5.8657 -1.5453 -0.8425 31 1 6.0848 -4.0158 -1.0479 32 1 6.1506 -4.1489 0.7262 33 1 8.1295 -2.6646 -1.0643 34 1 8.4380 -4.1642 -0.1539 35 1 10.9949 -0.8302 1.9410 36 1 9.3781 -0.0981 2.0914 37 1 11.8298 -0.0282 5.4122 38 1 12.4646 -0.7883 3.9317 39 1 10.1596 -1.8084 5.6549 40 1 11.7755 -2.5410 5.5051 41 1 7.8015 -0.7913 2.2603 42 1 7.7154 -0.4624 0.5105 43 1 5.4441 -0.5698 1.4077 44 1 5.7792 -2.1539 2.1475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204553011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:33 Heat of formation + Delta-G solvation = -104.217381 kcal Electronic energy + Delta-G solvation = -25185.536928 eV Core-core repulsion = 21524.668321 eV Total energy + Delta-G solvation = -3660.868606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07170 -39.60886 -37.85673 -36.37596 -35.19479 -33.30283 -32.25410 -31.01189 -30.75884 -28.63725 -27.07188 -25.43641 -23.70796 -23.44030 -22.29848 -21.41759 -20.51108 -19.41554 -17.97978 -17.48981 -17.16442 -17.04954 -16.44511 -15.97060 -15.70332 -15.03161 -14.77420 -14.64690 -14.47031 -14.15117 -13.91779 -13.75850 -13.28958 -13.24706 -13.21023 -12.60001 -12.53373 -12.36386 -12.05548 -11.94547 -11.45038 -11.31232 -11.25173 -11.02696 -10.94213 -10.59863 -10.45419 -10.31207 -10.14382 -9.90430 -9.61734 -9.60570 -8.92900 -8.83339 -7.25739 -5.79347 -3.14940 2.27579 2.40869 3.21749 3.31975 3.35365 3.41970 3.42787 4.02924 4.15186 4.43580 4.51013 4.55635 4.59043 4.65109 4.72949 4.82627 4.85708 4.97486 4.99226 5.10128 5.17159 5.23858 5.29620 5.34313 5.40157 5.51922 5.62779 5.66741 5.76438 5.83546 6.00229 6.06282 6.17882 6.28910 6.38214 6.44552 6.51944 6.65292 6.75744 7.11889 7.89923 7.97258 8.39754 9.18758 9.90829 10.10649 11.39275 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.003530 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.748585 B = 7930.117120 C = 8862.658023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.162 3.838 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.114 3.886 14 N -0.604 5.604 15 C 0.525 3.475 16 O -0.520 6.520 17 C 0.037 3.963 18 H 0.096 0.904 19 C 0.031 3.969 20 O -0.371 6.371 21 C 0.020 3.980 22 C 0.022 3.978 23 O -0.351 6.351 24 C 0.095 3.905 25 C -0.129 4.129 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.221 -1.688 6.774 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.340 5.340 15 C 0.311 3.689 16 O -0.395 6.395 17 C -0.024 4.024 18 H 0.114 0.886 19 C -0.047 4.047 20 O -0.290 6.290 21 C -0.057 4.057 22 C -0.054 4.054 23 O -0.269 6.269 24 C -0.028 4.028 25 C -0.167 4.167 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.317 -2.338 6.653 25.319 hybrid contribution 0.371 1.312 0.119 1.369 sum 24.688 -1.025 6.772 25.620 Atomic orbital electron populations 1.69704 1.05131 1.25820 1.57615 1.24688 0.95245 0.97219 1.02115 0.86537 0.79117 0.84997 0.77751 1.21094 1.21733 1.20389 1.19070 0.80692 0.94728 1.42900 0.89279 1.42722 1.04011 1.02201 1.91197 1.20647 0.87884 0.89254 0.98691 1.21368 0.96679 0.96227 0.97433 1.21908 0.93456 0.97915 1.03176 1.21676 0.96123 0.96679 0.86295 1.48075 1.34710 1.25037 1.26154 1.19840 0.80060 0.85734 0.83248 1.90714 1.51501 1.24317 1.73004 1.22567 0.93734 0.92640 0.93466 0.88615 1.23378 1.00967 0.91648 0.88676 1.88150 1.59108 1.42863 1.38855 1.23331 0.91476 0.94088 0.96792 1.23362 1.00501 0.93464 0.88121 1.88226 1.57975 1.42153 1.38534 1.22034 0.93149 0.85669 1.01904 1.21898 0.93451 1.02559 0.98814 0.93048 0.80718 0.95403 0.95556 0.90880 0.90211 0.91289 0.91174 0.88954 0.91365 0.86445 0.87318 0.91804 0.91688 0.87098 0.89675 0.90574 0.89660 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 21.51 27.74 -169.99 -4.71 16.80 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.16 6.52 56.52 0.37 -5.80 16 7 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.20 5.12 -59.91 -0.31 -17.51 16 10 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 11 C -0.10 -1.33 2.19 -90.58 -0.20 -1.53 16 12 C -0.13 -1.45 5.36 -26.61 -0.14 -1.59 16 13 C 0.11 1.25 6.44 -3.71 -0.02 1.22 16 14 N -0.60 -6.76 2.98 -173.03 -0.52 -7.28 16 15 C 0.53 6.78 7.12 -10.98 -0.08 6.71 16 16 O -0.52 -8.67 15.92 -14.25 -0.23 -8.90 16 17 C 0.04 0.40 2.41 -27.81 -0.07 0.34 16 18 H 0.10 0.93 7.41 -51.93 -0.38 0.54 16 19 C 0.03 0.28 5.91 37.23 0.22 0.50 16 20 O -0.37 -3.55 10.85 -48.80 -0.53 -4.07 16 21 C 0.02 0.14 7.05 37.23 0.26 0.41 16 22 C 0.02 0.17 7.05 37.23 0.26 0.44 16 23 O -0.35 -4.20 10.03 -62.50 -0.63 -4.82 16 24 C 0.09 0.93 5.04 -3.93 -0.02 0.91 16 25 C -0.13 -1.62 5.23 -26.83 -0.14 -1.76 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.36 7.85 4.71 -40.82 -0.19 7.66 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.12 0.89 5.52 -51.93 -0.29 0.61 16 37 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.70 4.62 -51.93 -0.24 0.46 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.20 7.15 -51.93 -0.37 0.83 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -34.79 341.39 -8.13 -42.92 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.93 Total: 4.51 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.20 Total: 1.59 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.05 Total: -53.17 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.38 Total: -17.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.79 -8.13 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204553011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.300 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds