Wall clock time and date at job start Tue Mar 31 2020 04:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00513 * 2 1 4 4 H 1.48500 * 109.47420 * 270.00371 * 3 2 1 5 5 H 1.48498 * 109.46873 * 29.99992 * 3 2 1 6 6 H 1.48496 * 109.47342 * 149.99701 * 3 2 1 7 7 C 1.38816 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00031 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47266 * 179.97438 * 10 9 7 12 12 C 1.53038 * 109.46255 * 184.99560 * 11 10 9 13 13 C 1.53190 * 109.31366 * 178.60957 * 12 11 10 14 14 N 1.46925 * 108.77268 * 54.64076 * 13 12 11 15 15 C 1.34779 * 120.63363 * 126.36267 * 14 13 12 16 16 O 1.21279 * 119.99537 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00316 * 179.97438 * 15 14 13 18 18 H 1.09003 * 109.57684 * 54.84022 * 17 15 14 19 19 C 1.53139 * 109.52216 * 294.67927 * 17 15 14 20 20 O 1.43080 * 109.14586 * 184.78335 * 19 17 15 21 21 C 1.43075 * 113.59203 * 57.95273 * 20 19 17 22 22 C 1.53136 * 109.15053 * 302.04275 * 21 20 19 23 23 O 1.43075 * 109.52422 * 175.00406 * 17 15 14 24 24 C 1.46924 * 118.73756 * 306.64169 * 14 13 12 25 25 C 1.52760 * 109.01109 * 53.30948 * 24 14 13 26 26 H 0.96999 * 119.99477 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47054 * 59.99734 * 10 9 7 29 29 H 1.09000 * 109.47024 * 299.99879 * 10 9 7 30 30 H 1.09000 * 109.46013 * 304.97200 * 11 10 9 31 31 H 1.09001 * 109.49097 * 58.66400 * 12 11 10 32 32 H 1.08999 * 109.52883 * 298.58628 * 12 11 10 33 33 H 1.08993 * 109.59164 * 294.85268 * 13 12 11 34 34 H 1.09005 * 109.70440 * 174.49358 * 13 12 11 35 35 H 1.09000 * 109.52721 * 304.67969 * 19 17 15 36 36 H 1.08997 * 109.52924 * 64.88247 * 19 17 15 37 37 H 1.09009 * 109.52391 * 182.14068 * 21 20 19 38 38 H 1.08999 * 109.52604 * 61.95413 * 21 20 19 39 39 H 1.08997 * 109.53109 * 295.41227 * 22 21 20 40 40 H 1.09001 * 109.57948 * 175.24715 * 22 21 20 41 41 H 1.09001 * 109.58533 * 173.14271 * 24 14 13 42 42 H 1.09006 * 109.58567 * 293.56675 * 24 14 13 43 43 H 1.09001 * 109.56567 * 185.55272 * 25 24 14 44 44 H 1.08996 * 109.38632 * 65.51577 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1916 -0.0009 12 6 6.3802 -3.5116 -0.1277 13 6 7.8847 -3.2250 -0.1621 14 7 8.2422 -2.4324 1.0223 15 6 9.2263 -2.8384 1.8488 16 8 9.8264 -3.8667 1.6179 17 6 9.5817 -2.0141 3.0593 18 1 8.6899 -1.8502 3.6643 19 6 10.1508 -0.6650 2.6107 20 8 10.5886 0.0654 3.7605 21 6 11.5727 -0.6245 4.5366 22 6 11.0036 -1.9735 4.9852 23 8 10.5659 -2.7040 3.8355 24 6 7.5024 -1.1920 1.2918 25 6 6.0059 -1.4984 1.3068 26 1 -0.4849 0.8401 0.0004 27 1 3.8647 -0.3623 0.0004 28 1 3.8490 -3.0416 -0.8918 29 1 3.8484 -3.0436 0.8881 30 1 5.8657 -1.5453 -0.8425 31 1 6.0848 -4.0158 -1.0479 32 1 6.1506 -4.1489 0.7262 33 1 8.1295 -2.6646 -1.0643 34 1 8.4380 -4.1642 -0.1539 35 1 10.9949 -0.8302 1.9410 36 1 9.3781 -0.0981 2.0914 37 1 11.8298 -0.0282 5.4122 38 1 12.4646 -0.7883 3.9317 39 1 10.1596 -1.8084 5.6549 40 1 11.7755 -2.5410 5.5051 41 1 7.8015 -0.7913 2.2603 42 1 7.7154 -0.4624 0.5105 43 1 5.4441 -0.5698 1.4077 44 1 5.7792 -2.1539 2.1475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204553011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:32 Heat of formation + Delta-G solvation = -128.985998 kcal Electronic energy + Delta-G solvation = -25186.610976 eV Core-core repulsion = 21524.668321 eV Total energy + Delta-G solvation = -3661.942654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91312 -40.41953 -38.94867 -37.14934 -36.67467 -34.69411 -33.42870 -32.43614 -31.81447 -29.43323 -28.35089 -26.31073 -25.10051 -24.38647 -23.41267 -22.57078 -21.59288 -20.40136 -19.64324 -18.63076 -17.97618 -17.76627 -17.11383 -16.83195 -16.63178 -16.41308 -16.00502 -15.73583 -15.54999 -15.47288 -15.04122 -14.68337 -14.54620 -14.27822 -14.18203 -14.05987 -13.71420 -13.33652 -13.22251 -13.01867 -12.77942 -12.63390 -12.22137 -12.14864 -11.95458 -11.87236 -11.74040 -11.65938 -11.43825 -11.38740 -10.95630 -10.82332 -10.32728 -9.77164 -9.27668 -8.01079 -5.35029 1.33417 1.39301 1.45321 1.52652 1.57930 2.51265 2.59875 2.70673 3.27062 3.30353 3.42391 3.56623 3.69912 3.78616 3.83226 3.92803 4.02711 4.08188 4.14861 4.19608 4.30217 4.35418 4.43837 4.49924 4.54243 4.68422 4.74065 4.76181 4.80344 4.83509 4.91442 5.00679 5.08335 5.13228 5.22512 5.46233 5.51199 5.77208 5.81929 5.84051 6.22240 6.23069 6.96194 7.10329 7.85566 8.06892 9.20815 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.003530 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.748585 B = 7930.117120 C = 8862.658023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.240 1.240 7 C -0.237 4.237 8 H 0.050 0.950 9 N -0.754 5.754 10 C 0.159 3.841 11 C -0.088 4.088 12 C -0.117 4.117 13 C 0.116 3.884 14 N -0.599 5.599 15 C 0.522 3.478 16 O -0.566 6.566 17 C 0.039 3.961 18 H 0.107 0.893 19 C 0.036 3.964 20 O -0.383 6.383 21 C 0.017 3.983 22 C 0.017 3.983 23 O -0.383 6.383 24 C 0.098 3.902 25 C -0.128 4.128 26 H 0.258 0.742 27 H 0.369 0.631 28 H 0.022 0.978 29 H 0.016 0.984 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.857 0.206 7.081 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.164 1.164 7 C -0.368 4.368 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.033 3.967 11 C -0.107 4.107 12 C -0.156 4.156 13 C -0.006 4.006 14 N -0.333 5.333 15 C 0.310 3.690 16 O -0.445 6.445 17 C -0.023 4.023 18 H 0.124 0.876 19 C -0.041 4.041 20 O -0.302 6.302 21 C -0.059 4.059 22 C -0.059 4.059 23 O -0.302 6.302 24 C -0.023 4.023 25 C -0.166 4.166 26 H 0.066 0.934 27 H 0.203 0.797 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 26.994 -0.453 6.965 27.882 hybrid contribution -0.506 0.579 0.049 0.771 sum 26.488 0.127 7.014 27.401 Atomic orbital electron populations 1.69910 1.07446 1.26790 1.59702 1.25612 0.96177 1.01681 1.02473 0.85355 0.79013 0.78871 0.78239 1.20364 1.22538 1.16375 1.19032 0.83018 0.93307 1.41478 0.93217 1.42661 1.02218 1.04227 1.90911 1.20799 0.90860 0.87293 0.97760 1.21266 0.93097 0.97608 0.98682 1.21821 0.93780 0.96697 1.03305 1.21684 0.95044 0.96792 0.87096 1.48142 1.34137 1.25308 1.25734 1.20283 0.79777 0.85278 0.83697 1.90689 1.53263 1.26335 1.74187 1.22609 0.94190 0.92837 0.92635 0.87583 1.23379 1.01284 0.90809 0.88652 1.88132 1.59662 1.43312 1.39063 1.23512 0.90900 0.94000 0.97484 1.23614 1.01310 0.93869 0.87114 1.88183 1.58369 1.43787 1.39882 1.22146 0.90804 0.85320 1.04038 1.21849 0.95398 1.01669 0.97683 0.93362 0.79712 0.95951 0.96639 0.89661 0.89185 0.92399 0.89032 0.90006 0.91788 0.84712 0.84780 0.91726 0.91017 0.85334 0.87741 0.88114 0.90559 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.19 13.97 21.65 0.30 -62.89 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.96 43.52 27.74 68.60 1.90 45.42 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.24 -9.28 6.52 99.48 0.65 -8.64 16 7 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -33.44 5.12 -343.45 -1.76 -35.19 16 10 C 0.16 5.67 5.65 86.38 0.49 6.16 16 11 C -0.09 -2.17 2.19 -10.77 -0.02 -2.20 16 12 C -0.12 -2.49 5.36 30.67 0.16 -2.33 16 13 C 0.12 2.27 6.44 86.36 0.56 2.82 16 14 N -0.60 -11.95 2.98 -819.74 -2.44 -14.39 16 15 C 0.52 12.76 7.12 87.66 0.62 13.38 16 16 O -0.57 -18.74 15.92 15.91 0.25 -18.49 16 17 C 0.04 0.76 2.41 29.90 0.07 0.83 16 18 H 0.11 1.82 7.41 -2.39 -0.02 1.80 16 19 C 0.04 0.56 5.91 72.03 0.43 0.99 16 20 O -0.38 -6.24 10.85 -136.00 -1.48 -7.71 16 21 C 0.02 0.20 7.05 72.03 0.51 0.71 16 22 C 0.02 0.23 7.05 72.03 0.51 0.74 16 23 O -0.38 -8.73 10.03 -122.90 -1.23 -9.96 16 24 C 0.10 1.57 5.04 86.22 0.43 2.01 16 25 C -0.13 -2.86 5.23 30.53 0.16 -2.70 16 26 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.37 15.02 4.71 -92.71 -0.44 14.58 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.84 7.00 -2.38 -0.02 1.83 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.14 1.53 5.52 -2.39 -0.01 1.52 16 37 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.31 4.62 -2.39 -0.01 1.30 16 42 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.08 1.89 7.15 -2.39 -0.02 1.87 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -77.53 341.39 1.32 -76.21 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.50 Total: 22.62 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.26 Total: 4.39 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.90 Total: -112.47 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.45 Total: -36.16 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Total: -77.53 1.32 -76.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204553011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.773 kcal (2) G-P(sol) polarization free energy of solvation -77.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds