Wall clock time and date at job start Tue Mar 31 2020 03:52:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46499 * 109.46980 * 2 1
4 4 N 1.40525 * 127.42148 * 264.97233 * 3 2 1
5 5 H 0.97001 * 126.16158 * 0.02562 * 4 3 2
6 6 N 1.28700 * 107.66894 * 180.28231 * 4 3 2
7 7 N 1.28400 * 111.09163 * 359.58838 * 6 4 3
8 8 C 1.35146 * 109.87321 * 0.41933 * 7 6 4
9 9 N 1.32513 * 126.89207 * 179.77513 * 8 7 6
10 10 C 1.34064 * 120.00340 * 359.97438 * 9 8 7
11 11 O 1.21807 * 120.00132 * 0.02562 * 10 9 8
12 12 N 1.34775 * 120.00125 * 179.97438 * 10 9 8
13 13 C 1.46506 * 119.99729 * 179.97438 * 12 10 9
14 14 C 1.50700 * 109.47107 * 90.00241 * 13 12 10
15 15 H 1.07996 * 120.00116 * 359.97438 * 14 13 12
16 16 C 1.37878 * 119.99738 * 179.97438 * 14 13 12
17 17 N 1.31517 * 120.00214 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 119.99652 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47357 * 0.02562 * 18 16 14
20 20 H 1.48511 * 109.46594 * 120.00255 * 18 16 14
21 21 H 1.48499 * 109.47511 * 240.00038 * 18 16 14
22 22 C 1.46494 * 120.00426 * 0.02562 * 12 10 9
23 23 C 1.52995 * 109.47515 * 89.99667 * 22 12 10
24 24 O 1.42899 * 109.47015 * 65.00410 * 23 22 12
25 25 C 1.42901 * 113.99808 * 180.02562 * 24 23 22
26 26 H 1.08998 * 109.47155 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.47404 * 300.00277 * 1 2 3
28 28 H 1.09003 * 109.46845 * 60.00158 * 1 2 3
29 29 H 1.09003 * 109.47404 * 239.99723 * 2 1 3
30 30 H 1.09003 * 109.46845 * 119.99842 * 2 1 3
31 31 H 1.09005 * 109.46692 * 209.99977 * 13 12 10
32 32 H 1.08998 * 109.47189 * 329.99866 * 13 12 10
33 33 H 0.97000 * 119.99969 * 179.97438 * 17 16 14
34 34 H 1.09001 * 109.47355 * 210.00341 * 22 12 10
35 35 H 1.09008 * 109.46598 * 329.99742 * 22 12 10
36 36 H 1.08999 * 109.47046 * 185.00690 * 23 22 12
37 37 H 1.09010 * 109.47075 * 305.00313 * 23 22 12
38 38 H 1.09005 * 109.47356 * 299.99807 * 25 24 23
39 39 H 1.09002 * 109.47424 * 59.99707 * 25 24 23
40 40 H 1.08997 * 109.47111 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.3952 2.1537 -1.1117
5 1 2.3803 1.8682 -2.0387
6 7 2.7686 3.3064 -0.6779
7 7 2.6682 3.3738 0.6004
8 6 2.2074 2.2004 1.0875
9 7 1.9825 1.9001 2.3584
10 6 2.2164 2.8109 3.3139
11 8 2.6351 3.9146 3.0139
12 7 1.9872 2.5055 4.6065
13 6 2.2433 3.5007 5.6507
14 6 0.9975 4.3158 5.8843
15 1 0.1044 4.1132 5.3119
16 6 0.9979 5.3203 6.8288
17 7 2.0856 5.5674 7.5255
18 14 -0.5462 6.3311 7.1178
19 1 -1.6241 5.8582 6.2124
20 1 -0.9821 6.1762 8.5290
21 1 -0.2600 7.7619 6.8423
22 6 1.4831 1.1783 4.9674
23 6 2.6618 0.2362 5.2198
24 8 3.3947 0.6854 6.3614
25 6 4.5232 -0.1293 6.6850
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3634 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 1.8934 -0.5139 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 2.5246 2.9942 6.5741
32 1 3.0537 4.1579 5.3354
33 1 2.0860 6.2743 8.1897
34 1 0.8776 1.2528 5.8707
35 1 0.8734 0.7873 4.1527
36 1 2.2889 -0.7719 5.4010
37 1 3.3156 0.2304 4.3475
38 1 4.1893 -1.1452 6.8965
39 1 5.2154 -0.1423 5.8431
40 1 5.0259 0.2782 7.5620
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205245922.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:53
Heat of formation + Delta-G solvation = 107.528672 kcal
Electronic energy + Delta-G solvation = -24942.158759 eV
Core-core repulsion = 21219.224558 eV
Total energy + Delta-G solvation = -3722.934201 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.154 amu
Computer time = 1.41 seconds
Orbital eigenvalues (eV)
-43.05421 -38.87697 -37.32705 -36.06717 -34.96506 -33.85146 -32.45286 -31.89173
-30.41925 -29.24566 -26.88023 -25.73355 -25.13857 -24.02322 -23.16026 -22.37407
-21.45448 -19.62104 -18.14589 -17.14199 -16.76106 -16.29548 -16.18105 -15.99542
-15.23375 -14.96997 -14.73568 -14.50168 -14.20514 -13.80604 -13.76281 -13.24539
-13.00254 -12.52143 -12.24920 -11.93356 -11.81135 -11.64658 -11.39880 -11.36877
-11.18205 -11.02271 -10.93602 -10.67573 -10.61470 -10.26874 -10.03658 -9.88304
-9.30923 -9.19112 -8.38143 -8.16155 -8.03348 -7.17472 -5.77058 -3.79970
0.52182 0.68813 2.46614 3.18509 3.45919 3.52428 3.57610 4.06734
4.10595 4.31206 4.51437 4.53258 4.63513 4.77484 4.77930 4.88980
5.01451 5.31254 5.48182 5.51720 5.56087 5.61605 5.76792 5.77817
5.79818 5.91172 5.98273 6.15262 6.31282 6.59827 6.69921 7.56002
7.65453 7.75002 7.86354 7.97765 8.18832 8.25155 8.56342 8.93475
9.22034 9.74201 9.89629 11.30498
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.012383 B = 0.005097 C = 0.004151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2260.658294 B = 5491.927020 C = 6744.427479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.148 3.852
3 N -0.429 5.429
4 N -0.324 5.324
5 H 0.472 0.528
6 N 0.097 4.903
7 N -0.263 5.263
8 C 0.551 3.449
9 N -0.607 5.607
10 C 0.661 3.339
11 O -0.572 6.572
12 N -0.575 5.575
13 C 0.261 3.739
14 C -0.517 4.517
15 H 0.054 0.946
16 C 0.059 3.941
17 N -0.896 5.896
18 Si 0.894 3.106
19 H -0.275 1.275
20 H -0.285 1.285
21 H -0.285 1.285
22 C 0.129 3.871
23 C 0.050 3.950
24 O -0.373 6.373
25 C 0.034 3.966
26 H 0.082 0.918
27 H 0.076 0.924
28 H 0.057 0.943
29 H 0.091 0.909
30 H 0.114 0.886
31 H 0.046 0.954
32 H 0.038 0.962
33 H 0.259 0.741
34 H 0.080 0.920
35 H 0.087 0.913
36 H 0.044 0.956
37 H 0.044 0.956
38 H 0.032 0.968
39 H 0.032 0.968
40 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.118 -18.677 -18.196 26.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.028 3.972
3 N -0.246 5.246
4 N -0.174 5.174
5 H 0.328 0.672
6 N 0.100 4.900
7 N -0.157 5.157
8 C 0.186 3.814
9 N -0.369 5.369
10 C 0.360 3.640
11 O -0.446 6.446
12 N -0.308 5.308
13 C 0.141 3.859
14 C -0.556 4.556
15 H 0.073 0.927
16 C -0.142 4.142
17 N -0.536 5.536
18 Si 0.722 3.278
19 H -0.200 1.200
20 H -0.212 1.212
21 H -0.211 1.211
22 C 0.004 3.996
23 C -0.028 4.028
24 O -0.291 6.291
25 C -0.063 4.063
26 H 0.101 0.899
27 H 0.095 0.905
28 H 0.076 0.924
29 H 0.109 0.891
30 H 0.132 0.868
31 H 0.064 0.936
32 H 0.056 0.944
33 H 0.069 0.931
34 H 0.098 0.902
35 H 0.105 0.895
36 H 0.062 0.938
37 H 0.063 0.937
38 H 0.051 0.949
39 H 0.051 0.949
40 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 0.230 -17.400 -17.702 24.823
hybrid contribution -0.883 -0.315 -0.526 1.075
sum -0.652 -17.715 -18.229 25.427
Atomic orbital electron populations
1.22275 0.93995 1.03485 1.03760 1.21877 0.95468 0.74774 1.05119
1.48890 1.64711 1.12693 0.98344 1.48360 1.56667 1.07123 1.05251
0.67164 1.78073 1.02824 0.99371 1.09759 1.77440 1.22464 1.19148
0.96644 1.21384 0.88608 0.82432 0.88955 1.68716 1.36796 1.37401
0.93998 1.16688 0.80144 0.83952 0.83221 1.91001 1.48192 1.23773
1.81665 1.47200 1.65063 1.13911 1.04618 1.19244 0.96680 0.85737
0.84240 1.21569 0.98024 1.16515 1.19488 0.92739 1.24901 0.96203
0.97033 0.96040 1.69968 1.27122 1.31920 1.24545 0.86507 0.83473
0.80242 0.77530 1.20008 1.21167 1.21073 1.21293 0.93728 0.83351
1.01206 1.23097 0.94753 0.96836 0.88153 1.88104 1.41421 1.52121
1.47453 1.22657 0.89043 0.94347 1.00279 0.89942 0.90494 0.92385
0.89107 0.86773 0.93642 0.94358 0.93111 0.90158 0.89526 0.93764
0.93737 0.94922 0.94895 0.89978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.02 10.24 37.16 0.38 -0.64 16
2 C 0.15 0.86 7.26 -4.04 -0.03 0.83 16
3 N -0.43 -4.44 3.75 -61.90 -0.23 -4.67 16
4 N -0.32 -2.58 8.33 60.35 0.50 -2.08 16
5 H 0.47 1.04 8.96 -331.76 -2.97 -1.93 16
6 N 0.10 1.27 13.33 60.35 0.80 2.07 16
7 N -0.26 -4.96 10.46 30.06 0.31 -4.64 16
8 C 0.55 9.46 8.57 -320.65 -2.75 6.71 16
9 N -0.61 -12.02 9.17 -17.34 -0.16 -12.18 16
10 C 0.66 16.71 8.19 -87.56 -0.72 15.99 16
11 O -0.57 -16.88 14.50 5.09 0.07 -16.81 16
12 N -0.57 -14.35 2.42 -180.97 -0.44 -14.79 16
13 C 0.26 7.69 4.98 -5.19 -0.03 7.66 16
14 C -0.52 -16.09 9.39 -34.44 -0.32 -16.42 16
15 H 0.05 1.71 7.81 -52.49 -0.41 1.30 16
16 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16
17 N -0.90 -28.63 13.29 55.43 0.74 -27.90 16
18 Si 0.89 23.49 29.54 -169.99 -5.02 18.46 16
19 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16
20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
21 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16
22 C 0.13 2.52 5.79 -4.05 -0.02 2.50 16
23 C 0.05 0.84 6.28 37.15 0.23 1.08 16
24 O -0.37 -7.27 9.52 -35.23 -0.34 -7.60 16
25 C 0.03 0.49 11.01 101.05 1.11 1.60 16
26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16
30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16
32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16
33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16
34 H 0.08 1.62 8.07 -51.93 -0.42 1.20 16
35 H 0.09 1.48 7.30 -51.92 -0.38 1.10 16
36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
37 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16
38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 349.21 15.07 5.26 5.26
Total: -1.00 -43.11 349.21 -9.03 -52.14
By element:
Atomic # 1 Polarization: -0.02 SS G_CDS: -8.30 Total: -8.32 kcal
Atomic # 6 Polarization: 23.29 SS G_CDS: -2.24 Total: 21.05 kcal
Atomic # 7 Polarization: -65.72 SS G_CDS: 1.53 Total: -64.19 kcal
Atomic # 8 Polarization: -24.15 SS G_CDS: -0.26 Total: -24.41 kcal
Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -43.11 -9.03 -52.14 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205245922.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 159.671 kcal
(2) G-P(sol) polarization free energy of solvation -43.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.143 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds