Wall clock time and date at job start Tue Mar 31 2020 03:52:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46499 * 109.46980 * 2 1
4 4 N 1.40525 * 127.42148 * 264.97233 * 3 2 1
5 5 H 0.97001 * 126.16158 * 0.02562 * 4 3 2
6 6 N 1.28700 * 107.66894 * 180.28231 * 4 3 2
7 7 N 1.28400 * 111.09163 * 359.58838 * 6 4 3
8 8 C 1.35146 * 109.87321 * 0.41933 * 7 6 4
9 9 N 1.32513 * 126.89207 * 179.77513 * 8 7 6
10 10 C 1.34064 * 120.00340 * 359.97438 * 9 8 7
11 11 O 1.21807 * 120.00132 * 0.02562 * 10 9 8
12 12 N 1.34775 * 120.00125 * 179.97438 * 10 9 8
13 13 C 1.46506 * 119.99729 * 179.97438 * 12 10 9
14 14 C 1.50700 * 109.47107 * 90.00241 * 13 12 10
15 15 H 1.07996 * 120.00116 * 359.97438 * 14 13 12
16 16 C 1.37878 * 119.99738 * 179.97438 * 14 13 12
17 17 N 1.31517 * 120.00214 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 119.99652 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47357 * 0.02562 * 18 16 14
20 20 H 1.48511 * 109.46594 * 120.00255 * 18 16 14
21 21 H 1.48499 * 109.47511 * 240.00038 * 18 16 14
22 22 C 1.46494 * 120.00426 * 0.02562 * 12 10 9
23 23 C 1.52995 * 109.47515 * 89.99667 * 22 12 10
24 24 O 1.42899 * 109.47015 * 65.00410 * 23 22 12
25 25 C 1.42901 * 113.99808 * 180.02562 * 24 23 22
26 26 H 1.08998 * 109.47155 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.47404 * 300.00277 * 1 2 3
28 28 H 1.09003 * 109.46845 * 60.00158 * 1 2 3
29 29 H 1.09003 * 109.47404 * 239.99723 * 2 1 3
30 30 H 1.09003 * 109.46845 * 119.99842 * 2 1 3
31 31 H 1.09005 * 109.46692 * 209.99977 * 13 12 10
32 32 H 1.08998 * 109.47189 * 329.99866 * 13 12 10
33 33 H 0.97000 * 119.99969 * 179.97438 * 17 16 14
34 34 H 1.09001 * 109.47355 * 210.00341 * 22 12 10
35 35 H 1.09008 * 109.46598 * 329.99742 * 22 12 10
36 36 H 1.08999 * 109.47046 * 185.00690 * 23 22 12
37 37 H 1.09010 * 109.47075 * 305.00313 * 23 22 12
38 38 H 1.09005 * 109.47356 * 299.99807 * 25 24 23
39 39 H 1.09002 * 109.47424 * 59.99707 * 25 24 23
40 40 H 1.08997 * 109.47111 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.3952 2.1537 -1.1117
5 1 2.3803 1.8682 -2.0387
6 7 2.7686 3.3064 -0.6779
7 7 2.6682 3.3738 0.6004
8 6 2.2074 2.2004 1.0875
9 7 1.9825 1.9001 2.3584
10 6 2.2164 2.8109 3.3139
11 8 2.6351 3.9146 3.0139
12 7 1.9872 2.5055 4.6065
13 6 2.2433 3.5007 5.6507
14 6 0.9975 4.3158 5.8843
15 1 0.1044 4.1132 5.3119
16 6 0.9979 5.3203 6.8288
17 7 2.0856 5.5674 7.5255
18 14 -0.5462 6.3311 7.1178
19 1 -1.6241 5.8582 6.2124
20 1 -0.9821 6.1762 8.5290
21 1 -0.2600 7.7619 6.8423
22 6 1.4831 1.1783 4.9674
23 6 2.6618 0.2362 5.2198
24 8 3.3947 0.6854 6.3614
25 6 4.5232 -0.1293 6.6850
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3634 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 1.8934 -0.5139 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 2.5246 2.9942 6.5741
32 1 3.0537 4.1579 5.3354
33 1 2.0860 6.2743 8.1897
34 1 0.8776 1.2528 5.8707
35 1 0.8734 0.7873 4.1527
36 1 2.2889 -0.7719 5.4010
37 1 3.3156 0.2304 4.3475
38 1 4.1893 -1.1452 6.8965
39 1 5.2154 -0.1423 5.8431
40 1 5.0259 0.2782 7.5620
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001205245922.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:51
Heat of formation + Delta-G solvation = 73.083654 kcal
Electronic energy + Delta-G solvation = -24943.652407 eV
Core-core repulsion = 21219.224558 eV
Total energy + Delta-G solvation = -3724.427849 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.154 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-44.21658 -40.61023 -38.73150 -37.01408 -36.58527 -35.40144 -34.68271 -33.02377
-31.48600 -30.91050 -28.85799 -27.03506 -26.14323 -25.49766 -24.56743 -23.91350
-22.84233 -20.84793 -19.54000 -18.56637 -18.29907 -17.95871 -17.65116 -17.36682
-16.74534 -16.62673 -16.36076 -15.93598 -15.36559 -15.28952 -14.80687 -14.53012
-14.29899 -14.11798 -13.51129 -13.31887 -13.13114 -13.04497 -12.74335 -12.70584
-12.64290 -12.60151 -12.52579 -12.13012 -12.10210 -11.85622 -11.83770 -11.71688
-11.58443 -10.58054 -10.48571 -10.12615 -9.53609 -8.98822 -8.11523 -6.27737
-0.62129 -0.25344 1.08839 1.36289 1.40569 1.52582 2.11583 2.41612
2.65402 2.97347 3.10772 3.15704 3.24408 3.39591 3.77753 4.04572
4.21447 4.29064 4.35705 4.40805 4.49994 4.57471 4.59899 4.71455
4.83291 4.87351 4.93030 5.01992 5.10399 5.30211 5.33562 5.40779
5.69770 5.89918 6.07221 6.20029 6.35150 6.42304 6.81122 6.93205
7.16926 7.38416 8.06129 8.94428
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.012383 B = 0.005097 C = 0.004151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2260.658294 B = 5491.927020 C = 6744.427479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.133 3.867
3 N -0.395 5.395
4 N -0.255 5.255
5 H 0.502 0.498
6 N 0.101 4.899
7 N -0.348 5.348
8 C 0.546 3.454
9 N -0.623 5.623
10 C 0.659 3.341
11 O -0.637 6.637
12 N -0.587 5.587
13 C 0.287 3.713
14 C -0.539 4.539
15 H 0.046 0.954
16 C 0.005 3.995
17 N -0.930 5.930
18 Si 0.971 3.029
19 H -0.270 1.270
20 H -0.265 1.265
21 H -0.280 1.280
22 C 0.128 3.872
23 C 0.058 3.942
24 O -0.419 6.419
25 C 0.030 3.970
26 H 0.113 0.887
27 H 0.039 0.961
28 H 0.066 0.934
29 H 0.150 0.850
30 H 0.116 0.884
31 H 0.029 0.971
32 H -0.017 1.017
33 H 0.266 0.734
34 H 0.066 0.934
35 H 0.112 0.888
36 H 0.090 0.910
37 H 0.041 0.959
38 H 0.064 0.936
39 H 0.038 0.962
40 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.629 -21.585 -20.978 30.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.015 3.985
3 N -0.210 5.210
4 N -0.112 5.112
5 H 0.366 0.634
6 N 0.104 4.896
7 N -0.239 5.239
8 C 0.181 3.819
9 N -0.389 5.389
10 C 0.358 3.642
11 O -0.516 6.516
12 N -0.320 5.320
13 C 0.165 3.835
14 C -0.578 4.578
15 H 0.064 0.936
16 C -0.194 4.194
17 N -0.570 5.570
18 Si 0.795 3.205
19 H -0.194 1.194
20 H -0.189 1.189
21 H -0.206 1.206
22 C 0.005 3.995
23 C -0.019 4.019
24 O -0.339 6.339
25 C -0.067 4.067
26 H 0.131 0.869
27 H 0.058 0.942
28 H 0.085 0.915
29 H 0.168 0.832
30 H 0.134 0.866
31 H 0.047 0.953
32 H 0.001 0.999
33 H 0.075 0.925
34 H 0.085 0.915
35 H 0.130 0.870
36 H 0.107 0.893
37 H 0.059 0.941
38 H 0.083 0.917
39 H 0.057 0.943
40 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -1.288 -20.411 -20.634 29.052
hybrid contribution -0.379 0.385 -0.092 0.548
sum -1.666 -20.026 -20.727 28.869
Atomic orbital electron populations
1.22263 0.93473 1.05041 1.02342 1.22595 0.95815 0.71909 1.08155
1.49485 1.61142 1.13270 0.97135 1.48685 1.50765 1.05534 1.06218
0.63383 1.78013 1.02524 1.00708 1.08353 1.77483 1.26881 1.21146
0.98405 1.21595 0.87595 0.83059 0.89671 1.68629 1.41091 1.35073
0.94153 1.17122 0.79150 0.83894 0.84041 1.90931 1.51522 1.26605
1.82558 1.47027 1.65878 1.15011 1.04075 1.18540 0.94487 0.85807
0.84673 1.21775 0.98147 1.17788 1.20048 0.93589 1.25900 1.00089
0.98014 0.95356 1.70102 1.29466 1.32513 1.24899 0.85324 0.78761
0.77997 0.78380 1.19425 1.18943 1.20566 1.21538 0.95123 0.81503
1.01377 1.23031 0.93528 0.97849 0.87495 1.88041 1.43112 1.54404
1.48317 1.22834 0.87956 0.95366 1.00494 0.86879 0.94202 0.91493
0.83247 0.86605 0.95294 0.99879 0.92529 0.91515 0.87016 0.89256
0.94051 0.91717 0.94337 0.90015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.33 10.24 71.98 0.74 -0.59 16
2 C 0.13 0.91 7.26 86.38 0.63 1.54 16
3 N -0.40 -6.94 3.75 -349.74 -1.31 -8.26 16
4 N -0.25 -3.08 8.33 37.02 0.31 -2.77 16
5 H 0.50 -0.69 8.96 -340.22 -3.05 -3.74 16
6 N 0.10 2.51 13.33 37.02 0.49 3.00 16
7 N -0.35 -13.46 10.46 -58.83 -0.62 -14.08 16
8 C 0.55 18.73 8.57 260.73 2.24 20.96 16
9 N -0.62 -25.43 9.17 -327.34 -3.00 -28.43 16
10 C 0.66 35.50 8.19 179.28 1.47 36.97 16
11 O -0.64 -40.70 14.50 -4.69 -0.07 -40.77 16
12 N -0.59 -31.27 2.42 -844.64 -2.04 -33.32 16
13 C 0.29 18.29 4.98 85.63 0.43 18.72 16
14 C -0.54 -35.43 9.39 25.60 0.24 -35.19 16
15 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16
16 C 0.00 0.29 5.46 84.65 0.46 0.75 16
17 N -0.93 -61.83 13.29 21.45 0.28 -61.54 16
18 Si 0.97 49.46 29.54 68.60 2.03 51.48 16
19 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16
20 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16
21 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16
22 C 0.13 5.15 5.79 86.38 0.50 5.65 16
23 C 0.06 1.97 6.28 71.98 0.45 2.42 16
24 O -0.42 -16.78 9.52 -148.98 -1.42 -18.20 16
25 C 0.03 0.85 11.01 113.37 1.25 2.10 16
26 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16
27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16
28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16
29 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16
30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.03 1.90 7.11 -2.38 -0.02 1.88 16
32 H -0.02 -1.24 7.42 -2.39 -0.02 -1.26 16
33 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16
34 H 0.07 2.81 8.07 -2.39 -0.02 2.79 16
35 H 0.11 3.84 7.30 -2.38 -0.02 3.82 16
36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
37 H 0.04 1.41 8.14 -2.38 -0.02 1.40 16
38 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16
39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
Total: -1.00 -106.35 349.21 1.06 -105.29
By element:
Atomic # 1 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.74 kcal
Atomic # 6 Polarization: 44.94 SS G_CDS: 8.40 Total: 53.33 kcal
Atomic # 7 Polarization: -139.51 SS G_CDS: -5.89 Total: -145.39 kcal
Atomic # 8 Polarization: -57.48 SS G_CDS: -1.49 Total: -58.97 kcal
Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.48 kcal
Total: -106.35 1.06 -105.29 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205245922.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 178.377 kcal
(2) G-P(sol) polarization free energy of solvation -106.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.084 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds