Wall clock time and date at job start Tue Mar 31 2020 03:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47259 * 89.99903 * 3 2 1 5 5 H 1.48502 * 109.47253 * 209.99956 * 3 2 1 6 6 H 1.48501 * 109.46858 * 329.99794 * 3 2 1 7 7 C 1.38956 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00062 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99893 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99660 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47206 * 179.97438 * 12 10 9 14 14 C 1.46901 * 111.00221 * 179.97438 * 13 12 10 15 15 H 1.08994 * 109.49790 * 325.07078 * 14 13 12 16 16 C 1.53037 * 109.49944 * 204.99935 * 14 13 12 17 17 C 1.53040 * 109.53790 * 178.68542 * 16 14 13 18 18 C 1.53189 * 109.31022 * 61.36687 * 17 16 14 19 19 N 1.46920 * 108.77815 * 305.36523 * 18 17 16 20 20 C 1.34783 * 120.63027 * 233.58934 * 19 18 17 21 21 O 1.21350 * 119.99734 * 171.35820 * 20 19 18 22 22 C 1.49441 * 119.99945 * 351.36009 * 20 19 18 23 23 N 1.34781 * 119.99960 * 173.23186 * 22 20 19 24 24 O 1.21349 * 120.00400 * 353.22891 * 22 20 19 25 25 C 1.46928 * 118.74075 * 53.60665 * 19 18 17 26 26 H 0.96999 * 119.99566 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00380 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46958 * 299.99634 * 12 10 9 29 29 H 1.08995 * 109.47139 * 59.99573 * 12 10 9 30 30 H 1.00898 * 110.99957 * 56.04602 * 13 12 10 31 31 H 1.09000 * 109.46196 * 298.71046 * 16 14 13 32 32 H 1.08999 * 109.45807 * 58.67723 * 16 14 13 33 33 H 1.08999 * 109.49766 * 181.32184 * 17 16 14 34 34 H 1.08999 * 109.49932 * 301.38203 * 17 16 14 35 35 H 1.09001 * 109.59091 * 65.15479 * 18 17 16 36 36 H 1.09002 * 109.58570 * 185.57631 * 18 17 16 37 37 H 0.97001 * 119.99868 * 359.97438 * 23 22 20 38 38 H 0.97000 * 120.00056 * 179.97438 * 23 22 20 39 39 H 1.08998 * 109.58794 * 186.60729 * 25 19 18 40 40 H 1.08998 * 109.58326 * 66.18025 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 1.4000 5 1 3.5458 1.4401 -0.7000 6 1 1.4457 2.6526 -0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9796 -0.0016 14 6 1.4978 -7.2709 -0.0016 15 1 0.5841 -7.1892 0.5870 16 6 2.4038 -8.3433 0.6076 17 6 1.6630 -9.6821 0.6381 18 6 1.3137 -10.1005 -0.7935 19 7 0.5652 -9.0113 -1.4353 20 6 -0.6319 -9.2454 -2.0087 21 8 -1.3112 -8.3173 -2.3954 22 6 -1.1224 -10.6480 -2.1681 23 7 -2.3732 -10.8778 -2.6147 24 8 -0.3947 -11.5801 -1.8956 25 6 1.1466 -7.6619 -1.4405 26 1 -0.4849 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0002 28 1 0.6167 -4.9209 0.8887 29 1 0.6173 -4.9204 -0.8913 30 1 2.8330 -5.9129 0.7798 31 1 3.3066 -8.4414 0.0047 32 1 2.6751 -8.0554 1.6233 33 1 2.3002 -10.4402 1.0935 34 1 0.7478 -9.5783 1.2209 35 1 2.2298 -10.2929 -1.3520 36 1 0.7008 -11.0017 -0.7716 37 1 -2.9550 -10.1328 -2.8322 38 1 -2.6915 -11.7882 -2.7185 39 1 0.4235 -6.9540 -1.8454 40 1 2.0492 -7.6554 -2.0516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209385680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:17 Heat of formation + Delta-G solvation = -91.104942 kcal Electronic energy + Delta-G solvation = -24060.984175 eV Core-core repulsion = 20297.143823 eV Total energy + Delta-G solvation = -3763.840352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16926 -39.13016 -38.32251 -37.74406 -35.27647 -34.08181 -33.77504 -32.50222 -31.21470 -30.01399 -27.02920 -26.07925 -24.17797 -23.97783 -22.31778 -20.97698 -19.88824 -19.17391 -18.18321 -17.86004 -17.46729 -16.70374 -16.32351 -15.93653 -15.60514 -15.34685 -14.93532 -14.55513 -14.33755 -14.26907 -14.05421 -13.81842 -13.68605 -13.28292 -12.86447 -12.72659 -12.22748 -12.11396 -11.77173 -11.50706 -11.38328 -11.15911 -11.02221 -11.00821 -10.55721 -10.37994 -10.29823 -10.20070 -9.53666 -9.49489 -8.99279 -8.44928 -8.10917 -7.94658 -6.39981 -3.80832 1.09091 2.14655 2.87457 3.19049 3.27642 3.33672 3.36458 3.91965 4.06706 4.12216 4.29150 4.63329 4.72749 4.85779 4.94065 5.17835 5.22108 5.27828 5.39873 5.42852 5.62670 5.70060 5.71770 5.81517 5.82828 5.94416 6.00639 6.04282 6.13311 6.26997 6.31843 6.54575 6.97739 7.17930 7.44949 7.56809 7.62091 7.68365 8.07786 8.62802 9.19351 9.55985 10.07245 10.77767 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002849 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.157225 B = 9825.051611 C =10668.318342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.284 1.284 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.049 3.951 13 N -0.661 5.661 14 C 0.076 3.924 15 H 0.047 0.953 16 C -0.125 4.125 17 C -0.131 4.131 18 C 0.068 3.932 19 N -0.576 5.576 20 C 0.503 3.497 21 O -0.519 6.519 22 C 0.517 3.483 23 N -0.820 5.820 24 O -0.515 6.515 25 C 0.116 3.884 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.355 0.645 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.095 0.905 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -22.883 -1.325 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.209 1.209 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.084 4.084 13 N -0.295 5.295 14 C -0.035 4.035 15 H 0.065 0.935 16 C -0.163 4.163 17 C -0.170 4.170 18 C -0.053 4.053 19 N -0.310 5.310 20 C 0.284 3.716 21 O -0.395 6.395 22 C 0.297 3.703 23 N -0.386 5.386 24 O -0.392 6.392 25 C -0.006 4.006 26 H 0.081 0.919 27 H 0.226 0.774 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.175 0.825 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.246 0.754 38 H 0.243 0.757 39 H 0.113 0.887 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.936 -22.644 -1.996 23.070 hybrid contribution -0.974 0.906 0.774 1.539 sum -4.910 -21.738 -1.222 22.319 Atomic orbital electron populations 1.69616 1.05945 1.28155 1.50548 1.25269 0.95633 0.99731 0.97329 0.85854 0.79261 0.80809 0.78344 1.20446 1.19391 1.20920 1.19703 0.93365 0.82227 1.47599 0.87911 1.41866 1.09232 1.04606 1.64276 1.19774 0.88356 0.84678 0.84519 1.90522 1.13712 1.87066 1.55491 1.21760 0.94319 0.90944 1.01339 1.59948 1.18713 0.99224 1.51625 1.21778 0.96323 0.90019 0.95358 0.93492 1.21759 0.98989 0.94087 1.01431 1.21924 1.00909 0.97492 0.96696 1.22874 0.98542 0.91394 0.92501 1.47983 1.18233 1.11142 1.53622 1.19947 0.82306 0.89154 0.80157 1.90797 1.54934 1.44647 1.49130 1.20231 0.82729 0.89913 0.77411 1.43572 1.14493 1.13362 1.67156 1.90557 1.54688 1.45387 1.48608 1.21823 0.99531 0.81703 0.97537 0.91868 0.77433 0.93764 0.89518 0.82470 0.90458 0.91382 0.90134 0.91700 0.90942 0.84607 0.75388 0.75694 0.88651 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 11 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 12 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 13 N -0.66 -10.56 5.94 -107.87 -0.64 -11.20 16 14 C 0.08 0.96 2.64 -67.59 -0.18 0.78 16 15 H 0.05 0.62 7.80 -51.93 -0.41 0.21 16 16 C -0.12 -1.26 5.17 -26.69 -0.14 -1.40 16 17 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 18 C 0.07 0.64 5.98 -3.72 -0.02 0.62 16 19 N -0.58 -6.57 2.97 -173.28 -0.52 -7.08 16 20 C 0.50 5.93 7.73 -11.59 -0.09 5.85 16 21 O -0.52 -7.35 15.93 5.50 0.09 -7.26 16 22 C 0.52 4.93 8.01 -11.59 -0.09 4.83 16 23 N -0.82 -4.84 8.87 30.90 0.27 -4.56 16 24 O -0.52 -5.61 14.02 5.50 0.08 -5.54 16 25 C 0.12 1.49 5.91 -3.71 -0.02 1.47 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 28 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 29 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 30 H 0.35 5.75 8.03 -39.29 -0.32 5.44 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.14 1.32 4.32 -54.76 -0.24 1.09 16 37 H 0.42 2.09 8.32 -40.82 -0.34 1.75 16 38 H 0.41 1.46 8.93 -40.82 -0.36 1.10 16 39 H 0.10 1.39 6.49 -51.93 -0.34 1.05 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -33.51 334.89 -6.18 -39.69 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -5.18 Total: 15.06 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -1.06 Total: 14.08 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.22 Total: -61.48 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: 0.25 Total: -28.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.51 -6.18 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209385680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.418 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds