Wall clock time and date at job start Tue Mar 31 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47259 * 89.99903 * 3 2 1 5 5 H 1.48502 * 109.47253 * 209.99956 * 3 2 1 6 6 H 1.48501 * 109.46858 * 329.99794 * 3 2 1 7 7 C 1.38956 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00062 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99893 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99660 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47206 * 179.97438 * 12 10 9 14 14 C 1.46901 * 111.00221 * 179.97438 * 13 12 10 15 15 H 1.08994 * 109.49790 * 325.07078 * 14 13 12 16 16 C 1.53037 * 109.49944 * 204.99935 * 14 13 12 17 17 C 1.53040 * 109.53790 * 178.68542 * 16 14 13 18 18 C 1.53189 * 109.31022 * 61.36687 * 17 16 14 19 19 N 1.46920 * 108.77815 * 305.36523 * 18 17 16 20 20 C 1.34783 * 120.63027 * 233.58934 * 19 18 17 21 21 O 1.21350 * 119.99734 * 171.35820 * 20 19 18 22 22 C 1.49441 * 119.99945 * 351.36009 * 20 19 18 23 23 N 1.34781 * 119.99960 * 173.23186 * 22 20 19 24 24 O 1.21349 * 120.00400 * 353.22891 * 22 20 19 25 25 C 1.46928 * 118.74075 * 53.60665 * 19 18 17 26 26 H 0.96999 * 119.99566 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00380 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46958 * 299.99634 * 12 10 9 29 29 H 1.08995 * 109.47139 * 59.99573 * 12 10 9 30 30 H 1.00898 * 110.99957 * 56.04602 * 13 12 10 31 31 H 1.09000 * 109.46196 * 298.71046 * 16 14 13 32 32 H 1.08999 * 109.45807 * 58.67723 * 16 14 13 33 33 H 1.08999 * 109.49766 * 181.32184 * 17 16 14 34 34 H 1.08999 * 109.49932 * 301.38203 * 17 16 14 35 35 H 1.09001 * 109.59091 * 65.15479 * 18 17 16 36 36 H 1.09002 * 109.58570 * 185.57631 * 18 17 16 37 37 H 0.97001 * 119.99868 * 359.97438 * 23 22 20 38 38 H 0.97000 * 120.00056 * 179.97438 * 23 22 20 39 39 H 1.08998 * 109.58794 * 186.60729 * 25 19 18 40 40 H 1.08998 * 109.58326 * 66.18025 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 1.4000 5 1 3.5458 1.4401 -0.7000 6 1 1.4457 2.6526 -0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9796 -0.0016 14 6 1.4978 -7.2709 -0.0016 15 1 0.5841 -7.1892 0.5870 16 6 2.4038 -8.3433 0.6076 17 6 1.6630 -9.6821 0.6381 18 6 1.3137 -10.1005 -0.7935 19 7 0.5652 -9.0113 -1.4353 20 6 -0.6319 -9.2454 -2.0087 21 8 -1.3112 -8.3173 -2.3954 22 6 -1.1224 -10.6480 -2.1681 23 7 -2.3732 -10.8778 -2.6147 24 8 -0.3947 -11.5801 -1.8956 25 6 1.1466 -7.6619 -1.4405 26 1 -0.4849 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0002 28 1 0.6167 -4.9209 0.8887 29 1 0.6173 -4.9204 -0.8913 30 1 2.8330 -5.9129 0.7798 31 1 3.3066 -8.4414 0.0047 32 1 2.6751 -8.0554 1.6233 33 1 2.3002 -10.4402 1.0935 34 1 0.7478 -9.5783 1.2209 35 1 2.2298 -10.2929 -1.3520 36 1 0.7008 -11.0017 -0.7716 37 1 -2.9550 -10.1328 -2.8322 38 1 -2.6915 -11.7882 -2.7185 39 1 0.4235 -6.9540 -1.8454 40 1 2.0492 -7.6554 -2.0516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209385680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:16 Heat of formation + Delta-G solvation = -120.647096 kcal Electronic energy + Delta-G solvation = -24062.265219 eV Core-core repulsion = 20297.143823 eV Total energy + Delta-G solvation = -3765.121396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02120 -40.32590 -39.73067 -38.86425 -36.50283 -35.81572 -34.70854 -33.45493 -33.22291 -31.15858 -28.30519 -27.36014 -25.83499 -24.85193 -23.30579 -21.87240 -21.09763 -20.66741 -19.90558 -18.94869 -18.26691 -17.90421 -17.40017 -16.99921 -16.95465 -16.56756 -16.18272 -16.05790 -15.69399 -15.38251 -15.32938 -15.00522 -14.82034 -14.41426 -14.15780 -13.90544 -13.58221 -13.49425 -13.23564 -12.94697 -12.85682 -12.44230 -12.42128 -12.12536 -11.97387 -11.85864 -11.51936 -11.50001 -10.93178 -10.38859 -10.33150 -10.03157 -9.91489 -9.41857 -8.47343 -5.96506 0.26616 1.32552 1.37775 1.41588 1.54764 2.02727 2.04097 2.28395 2.59058 2.88545 3.19573 3.43896 3.44889 3.71810 3.87724 4.05647 4.14616 4.24103 4.29398 4.40534 4.49305 4.54617 4.61121 4.76520 4.88257 4.94784 5.00874 5.11613 5.19010 5.34899 5.40292 5.67645 5.85996 5.89309 6.05253 6.15910 6.34987 6.58138 6.66057 6.98055 7.11054 7.54124 8.08770 8.70188 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002849 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.157225 B = 9825.051611 C =10668.318342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.081 3.919 15 H 0.047 0.953 16 C -0.120 4.120 17 C -0.123 4.123 18 C 0.067 3.933 19 N -0.576 5.576 20 C 0.496 3.504 21 O -0.549 6.549 22 C 0.522 3.478 23 N -0.798 5.798 24 O -0.530 6.530 25 C 0.119 3.881 26 H 0.278 0.722 27 H 0.396 0.604 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.353 0.647 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.422 0.578 38 H 0.425 0.575 39 H 0.074 0.926 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -24.063 -0.938 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.068 4.068 13 N -0.305 5.305 14 C -0.029 4.029 15 H 0.065 0.935 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.053 4.053 19 N -0.308 5.308 20 C 0.279 3.721 21 O -0.428 6.428 22 C 0.300 3.700 23 N -0.364 5.364 24 O -0.409 6.409 25 C -0.004 4.004 26 H 0.087 0.913 27 H 0.229 0.771 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.174 0.826 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.254 0.746 38 H 0.260 0.740 39 H 0.093 0.907 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.410 -23.871 -1.611 24.328 hybrid contribution -0.865 1.213 0.625 1.616 sum -5.275 -22.658 -0.986 23.284 Atomic orbital electron populations 1.69680 1.06916 1.29345 1.50253 1.26078 0.96548 1.02519 0.96204 0.84906 0.77869 0.76726 0.78706 1.19484 1.19716 1.19578 1.19687 0.92751 0.83951 1.49985 0.90156 1.41946 1.09328 1.04789 1.64956 1.20753 0.88227 0.85990 0.82333 1.90489 1.15620 1.87908 1.56640 1.21577 0.94054 0.88464 1.02688 1.59920 1.18768 0.99961 1.51806 1.21806 0.96629 0.89088 0.95384 0.93530 1.21742 0.98512 0.93983 1.01548 1.21903 1.01147 0.97019 0.96123 1.23014 0.98583 0.90700 0.93006 1.48076 1.18334 1.10935 1.53493 1.20433 0.82124 0.90033 0.79510 1.90779 1.55808 1.45779 1.50399 1.19807 0.83637 0.88492 0.78020 1.43436 1.13162 1.14553 1.65261 1.90555 1.55326 1.45145 1.49833 1.21650 0.98806 0.82376 0.97529 0.91272 0.77070 0.91690 0.88625 0.82633 0.90478 0.90588 0.87663 0.91704 0.90296 0.84380 0.74640 0.73964 0.90730 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 13.05 21.66 0.28 -50.22 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -30.07 5.29 -306.98 -1.62 -31.69 16 10 C 0.44 21.30 7.82 87.65 0.69 21.98 16 11 O -0.62 -34.54 15.78 -3.08 -0.05 -34.59 16 12 C 0.06 2.31 5.97 85.56 0.51 2.82 16 13 N -0.67 -21.09 5.94 -495.20 -2.94 -24.03 16 14 C 0.08 1.97 2.64 44.99 0.12 2.09 16 15 H 0.05 1.16 7.80 -2.39 -0.02 1.14 16 16 C -0.12 -2.20 5.17 30.62 0.16 -2.04 16 17 C -0.12 -1.79 6.08 30.67 0.19 -1.60 16 18 C 0.07 1.14 5.98 86.36 0.52 1.66 16 19 N -0.58 -12.60 2.97 -820.50 -2.44 -15.04 16 20 C 0.50 11.37 7.73 87.26 0.67 12.05 16 21 O -0.55 -15.50 15.93 -3.25 -0.05 -15.55 16 22 C 0.52 9.18 8.01 87.27 0.70 9.88 16 23 N -0.80 -7.97 8.87 -174.50 -1.55 -9.52 16 24 O -0.53 -10.63 14.02 -3.24 -0.05 -10.68 16 25 C 0.12 3.03 5.91 86.36 0.51 3.54 16 26 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 28 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 29 H 0.10 3.27 7.57 -2.39 -0.02 3.26 16 30 H 0.35 11.29 8.03 -89.70 -0.72 10.57 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.30 8.10 -2.39 -0.02 1.29 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.14 2.41 4.32 -47.25 -0.20 2.21 16 37 H 0.42 3.58 8.32 -92.71 -0.77 2.81 16 38 H 0.43 2.07 8.93 -92.71 -0.83 1.24 16 39 H 0.07 2.20 6.49 -2.39 -0.02 2.19 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -72.46 334.89 -3.16 -75.61 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -2.11 Total: 38.67 kcal Atomic # 6 Polarization: 26.31 SS G_CDS: 5.34 Total: 31.66 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -8.27 Total: -130.51 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -0.15 Total: -60.82 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.46 -3.16 -75.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209385680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.034 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds