Wall clock time and date at job start Tue Mar 31 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48501 * 109.47259 * 239.99948 * 3 2 1 5 5 H 1.48499 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47363 * 119.99824 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 N 1.46506 * 109.57219 * 177.59060 * 16 15 14 18 18 C 1.34776 * 119.99826 * 85.28461 * 17 16 15 19 19 O 1.21351 * 119.99867 * 0.02562 * 18 17 16 20 20 C 1.49448 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.34780 * 120.00033 * 180.02562 * 20 18 17 22 22 O 1.21348 * 120.00043 * 0.02562 * 20 18 17 23 23 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 24 24 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 25 25 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 28 28 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 29 29 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 30 30 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 31 31 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 32 32 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 33 33 H 1.08994 * 109.52529 * 297.74668 * 16 15 14 34 34 H 0.97000 * 120.00083 * 265.28915 * 17 16 15 35 35 H 0.97000 * 119.99793 * 0.02562 * 21 20 18 36 36 H 0.96991 * 119.99899 * 179.97438 * 21 20 18 37 37 H 1.08998 * 109.50519 * 182.40701 * 23 16 15 38 38 H 1.08998 * 109.50523 * 62.27926 * 23 16 15 39 39 H 1.08994 * 109.45963 * 294.17267 * 24 13 12 40 40 H 1.09003 * 109.46062 * 54.15362 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 7 4.3137 -9.4309 -1.2935 18 6 3.9957 -10.7054 -1.5950 19 8 2.8483 -10.9979 -1.8605 20 6 5.0564 -11.7581 -1.6034 21 7 4.7386 -13.0326 -1.9054 22 8 6.2038 -11.4655 -1.3383 23 6 3.9106 -7.0293 -1.5387 24 6 2.8288 -5.9489 -1.4706 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.7037 -4.9702 0.9428 28 1 0.5359 -4.8742 -0.8266 29 1 1.0434 -7.2425 1.0720 30 1 0.7887 -7.4464 -0.6777 31 1 2.0841 -9.3427 0.2440 32 1 3.3121 -8.2105 0.8615 33 1 2.5441 -8.6111 -2.0669 34 1 5.2309 -9.1970 -1.0815 35 1 3.8214 -13.2665 -2.1177 36 1 5.4271 -13.7158 -1.9113 37 1 4.3728 -7.0196 -2.5258 38 1 4.6680 -6.8342 -0.7796 39 1 2.0789 -6.1369 -2.2390 40 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228904607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:26 Heat of formation + Delta-G solvation = -105.029382 kcal Electronic energy + Delta-G solvation = -23861.360492 eV Core-core repulsion = 20096.916331 eV Total energy + Delta-G solvation = -3764.444161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93397 -39.40525 -38.54909 -37.55296 -35.37448 -34.02900 -33.79987 -31.79098 -31.15043 -30.78908 -27.45392 -25.55163 -24.25277 -23.19733 -22.43968 -20.67679 -20.05213 -19.18170 -18.80787 -17.85451 -17.57929 -16.43334 -16.20240 -16.06815 -15.84256 -15.19571 -14.97365 -14.59761 -14.36382 -14.19801 -13.90154 -13.78979 -13.48263 -13.23220 -13.07199 -12.31515 -12.09007 -11.92501 -11.61399 -11.46471 -11.26830 -11.15022 -11.02996 -10.85570 -10.48971 -10.43733 -10.30717 -10.20850 -9.96162 -9.47103 -9.36956 -8.44200 -7.97007 -7.86397 -6.41026 -3.81818 1.09508 2.18663 2.90000 3.20389 3.26169 3.30382 3.54920 3.91709 3.96733 4.23820 4.24084 4.66907 4.73314 5.03434 5.06738 5.24854 5.27761 5.40118 5.43643 5.59663 5.64734 5.76608 5.82861 5.92115 5.97831 6.02922 6.07975 6.12917 6.27542 6.31771 6.38788 6.53609 7.01938 7.26420 7.39045 7.47333 7.55560 7.69170 8.06986 8.62713 9.18814 9.55491 10.07342 10.76664 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.044236 B = 0.002496 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.816118 B =11214.776294 C =11614.464541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.058 3.942 15 C -0.124 4.124 16 C 0.141 3.859 17 N -0.690 5.690 18 C 0.505 3.495 19 O -0.522 6.522 20 C 0.513 3.487 21 N -0.824 5.824 22 O -0.521 6.521 23 C -0.120 4.120 24 C 0.060 3.940 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.414 0.586 36 H 0.410 0.590 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -22.131 -3.613 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.241 5.241 14 C -0.070 4.070 15 C -0.162 4.162 16 C 0.037 3.963 17 N -0.342 5.342 18 C 0.285 3.715 19 O -0.399 6.399 20 C 0.292 3.708 21 N -0.390 5.390 22 O -0.396 6.396 23 C -0.158 4.158 24 C -0.069 4.069 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.250 0.750 35 H 0.245 0.755 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.053 -21.728 -3.261 22.342 hybrid contribution -0.663 0.395 -0.556 0.951 sum 3.390 -21.333 -3.816 21.935 Atomic orbital electron populations 1.69602 1.05926 1.28241 1.50600 1.25260 0.95632 0.99713 0.97375 0.85922 0.78754 0.80504 0.79059 1.19942 1.21020 1.19896 1.19640 0.93311 0.82221 1.47645 0.87974 1.41882 1.09197 1.04608 1.64500 1.19752 0.88439 0.84519 0.84463 1.90502 1.13629 1.86943 1.55001 1.21843 0.93684 0.91179 1.01776 1.61513 1.31182 1.01043 1.30323 1.22045 0.94911 0.88847 1.01225 1.21950 0.98949 0.98292 0.97043 1.21317 0.89576 0.86625 0.98785 1.45960 1.13733 1.07000 1.67466 1.20036 0.88551 0.84139 0.78793 1.90773 1.20311 1.81297 1.47478 1.20221 0.88623 0.84445 0.77525 1.43532 1.15520 1.08905 1.71028 1.90832 1.20573 1.81517 1.46713 1.21854 0.99351 0.91954 1.02661 1.22115 0.95570 1.00785 0.88393 0.91841 0.77506 0.89205 0.93492 0.90306 0.94909 0.91188 0.90429 0.89257 0.75009 0.75544 0.75745 0.90949 0.89870 0.95539 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.57 -14.12 5.29 -10.96 -0.06 -14.18 16 10 C 0.44 10.21 7.31 -10.99 -0.08 10.13 16 11 O -0.58 -15.14 14.29 5.55 0.08 -15.06 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 N -0.52 -8.23 4.35 -236.12 -1.03 -9.26 16 14 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 15 C -0.12 -1.42 5.68 -26.65 -0.15 -1.57 16 16 C 0.14 1.57 2.52 -67.80 -0.17 1.40 16 17 N -0.69 -6.99 5.08 -54.11 -0.27 -7.26 16 18 C 0.50 5.31 7.86 -11.59 -0.09 5.22 16 19 O -0.52 -6.43 16.14 5.50 0.09 -6.34 16 20 C 0.51 4.79 8.16 -11.58 -0.09 4.70 16 21 N -0.82 -4.61 8.87 30.90 0.27 -4.33 16 22 O -0.52 -6.22 17.31 5.50 0.10 -6.13 16 23 C -0.12 -1.47 5.57 -26.65 -0.15 -1.61 16 24 C 0.06 0.91 5.12 -3.83 -0.02 0.89 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 26 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 27 H 0.09 1.42 7.98 -51.93 -0.41 1.00 16 28 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.41 3.83 8.08 -40.82 -0.33 3.50 16 35 H 0.41 1.79 8.30 -40.82 -0.34 1.45 16 36 H 0.41 1.47 8.93 -40.82 -0.36 1.10 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 1.95 6.06 -51.93 -0.31 1.63 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -33.05 338.80 -6.42 -39.47 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.36 Total: 12.97 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -1.04 Total: 12.77 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.36 Total: -58.72 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: 0.26 Total: -27.53 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.05 -6.42 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228904607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.561 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds