Wall clock time and date at job start Tue Mar 31 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48501 * 109.47259 * 239.99948 * 3 2 1 5 5 H 1.48499 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47363 * 119.99824 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 N 1.46506 * 109.57219 * 177.59060 * 16 15 14 18 18 C 1.34776 * 119.99826 * 85.28461 * 17 16 15 19 19 O 1.21351 * 119.99867 * 0.02562 * 18 17 16 20 20 C 1.49448 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.34780 * 120.00033 * 180.02562 * 20 18 17 22 22 O 1.21348 * 120.00043 * 0.02562 * 20 18 17 23 23 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 24 24 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 25 25 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 28 28 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 29 29 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 30 30 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 31 31 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 32 32 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 33 33 H 1.08994 * 109.52529 * 297.74668 * 16 15 14 34 34 H 0.97000 * 120.00083 * 265.28915 * 17 16 15 35 35 H 0.97000 * 119.99793 * 0.02562 * 21 20 18 36 36 H 0.96991 * 119.99899 * 179.97438 * 21 20 18 37 37 H 1.08998 * 109.50519 * 182.40701 * 23 16 15 38 38 H 1.08998 * 109.50523 * 62.27926 * 23 16 15 39 39 H 1.08994 * 109.45963 * 294.17267 * 24 13 12 40 40 H 1.09003 * 109.46062 * 54.15362 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 7 4.3137 -9.4309 -1.2935 18 6 3.9957 -10.7054 -1.5950 19 8 2.8483 -10.9979 -1.8605 20 6 5.0564 -11.7581 -1.6034 21 7 4.7386 -13.0326 -1.9054 22 8 6.2038 -11.4655 -1.3383 23 6 3.9106 -7.0293 -1.5387 24 6 2.8288 -5.9489 -1.4706 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.7037 -4.9702 0.9428 28 1 0.5359 -4.8742 -0.8266 29 1 1.0434 -7.2425 1.0720 30 1 0.7887 -7.4464 -0.6777 31 1 2.0841 -9.3427 0.2440 32 1 3.3121 -8.2105 0.8615 33 1 2.5441 -8.6111 -2.0669 34 1 5.2309 -9.1970 -1.0815 35 1 3.8214 -13.2665 -2.1177 36 1 5.4271 -13.7158 -1.9113 37 1 4.3728 -7.0196 -2.5258 38 1 4.6680 -6.8342 -0.7796 39 1 2.0789 -6.1369 -2.2390 40 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228904607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:24 Heat of formation + Delta-G solvation = -134.736060 kcal Electronic energy + Delta-G solvation = -23862.648670 eV Core-core repulsion = 20096.916331 eV Total energy + Delta-G solvation = -3765.732339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76133 -40.63692 -39.71322 -38.88707 -36.44182 -35.79502 -34.64603 -33.30199 -32.72363 -31.84335 -28.85132 -26.84178 -25.72696 -24.26257 -23.53149 -21.49983 -21.08549 -20.89345 -19.85311 -19.57527 -18.32462 -17.73406 -17.19252 -17.06369 -16.84029 -16.56246 -16.32202 -16.17471 -15.59251 -15.33304 -15.18954 -15.12675 -14.75236 -14.37667 -14.21593 -13.82523 -13.47600 -13.20284 -12.95452 -12.92767 -12.69466 -12.42606 -12.35440 -12.18364 -12.11478 -11.87634 -11.63584 -11.38423 -10.90916 -10.80933 -10.28322 -10.22983 -9.97093 -9.17670 -8.44025 -5.92281 0.31902 1.40984 1.42644 1.43122 1.53344 2.09399 2.12231 2.29941 2.76000 2.84768 3.23100 3.40985 3.57078 3.69223 3.82941 4.04484 4.18581 4.30533 4.36072 4.47564 4.49310 4.57513 4.60883 4.73408 4.88523 4.96558 5.02066 5.11809 5.20676 5.33056 5.43157 5.54297 5.89874 5.92555 6.10678 6.24066 6.29459 6.63943 6.76857 7.01086 7.16008 7.60408 8.16266 8.73195 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.044236 B = 0.002496 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.816118 B =11214.776294 C =11614.464541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.060 3.940 15 C -0.117 4.117 16 C 0.149 3.851 17 N -0.685 5.685 18 C 0.506 3.494 19 O -0.540 6.540 20 C 0.516 3.484 21 N -0.800 5.800 22 O -0.552 6.552 23 C -0.111 4.111 24 C 0.061 3.939 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.418 0.582 35 H 0.423 0.577 36 H 0.423 0.577 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -23.534 -3.773 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.073 4.073 13 N -0.259 5.259 14 C -0.068 4.068 15 C -0.156 4.156 16 C 0.045 3.955 17 N -0.337 5.337 18 C 0.287 3.713 19 O -0.418 6.418 20 C 0.294 3.706 21 N -0.367 5.367 22 O -0.429 6.429 23 C -0.149 4.149 24 C -0.068 4.068 25 H 0.086 0.914 26 H 0.229 0.771 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.255 0.745 35 H 0.255 0.745 36 H 0.257 0.743 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.536 -23.187 -3.428 23.704 hybrid contribution -0.512 0.733 -0.522 1.035 sum 3.024 -22.454 -3.950 22.998 Atomic orbital electron populations 1.69666 1.06795 1.29250 1.50564 1.26022 0.96539 1.02373 0.96489 0.85008 0.77749 0.76786 0.78918 1.19724 1.19633 1.19767 1.19605 0.92658 0.83991 1.49709 0.90293 1.41957 1.09302 1.04734 1.65438 1.20780 0.88339 0.85862 0.82077 1.90478 1.15597 1.87797 1.55933 1.21722 0.93406 0.88544 1.03678 1.61484 1.31571 1.02032 1.30778 1.22122 0.95285 0.87157 1.02239 1.21893 0.98605 0.98224 0.96874 1.21129 0.89575 0.86121 0.98652 1.45882 1.13753 1.06870 1.67212 1.20234 0.88569 0.84312 0.78193 1.90765 1.21031 1.81587 1.48369 1.20011 0.87755 0.85119 0.77686 1.43413 1.16467 1.07883 1.68915 1.90830 1.21414 1.82044 1.48649 1.21734 0.98202 0.91773 1.03175 1.22010 0.96444 0.99675 0.88655 0.91391 0.77086 0.87057 0.91563 0.89129 0.93710 0.90246 0.90993 0.89427 0.74462 0.74480 0.74263 0.89608 0.90854 0.94352 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.58 -29.37 5.29 -306.98 -1.62 -30.99 16 10 C 0.44 20.70 7.31 87.66 0.64 21.34 16 11 O -0.61 -33.15 14.29 -3.07 -0.04 -33.20 16 12 C 0.06 1.94 5.45 85.56 0.47 2.41 16 13 N -0.53 -16.46 4.35 -900.94 -3.92 -20.38 16 14 C 0.06 1.37 5.46 86.33 0.47 1.84 16 15 C -0.12 -2.46 5.68 30.65 0.17 -2.28 16 16 C 0.15 3.11 2.52 45.07 0.11 3.22 16 17 N -0.69 -12.92 5.08 -443.47 -2.25 -15.17 16 18 C 0.51 9.82 7.86 87.27 0.69 10.50 16 19 O -0.54 -12.25 16.14 -3.25 -0.05 -12.30 16 20 C 0.52 8.80 8.16 87.27 0.71 9.51 16 21 N -0.80 -7.23 8.87 -174.50 -1.55 -8.78 16 22 O -0.55 -12.54 17.31 -3.24 -0.06 -12.59 16 23 C -0.11 -2.63 5.57 30.65 0.17 -2.46 16 24 C 0.06 1.83 5.12 86.33 0.44 2.27 16 25 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 26 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 27 H 0.11 3.30 7.98 -2.39 -0.02 3.28 16 28 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 29 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.92 7.57 -2.39 -0.02 1.90 16 34 H 0.42 7.31 8.08 -92.71 -0.75 6.57 16 35 H 0.42 2.65 8.30 -92.71 -0.77 1.88 16 36 H 0.42 2.06 8.93 -92.72 -0.83 1.23 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 2.46 6.06 -2.39 -0.01 2.44 16 Total: -1.00 -71.68 338.80 -3.98 -75.66 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -1.96 Total: 34.00 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 5.16 Total: 28.22 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -9.05 Total: -124.78 kcal Atomic # 8 Polarization: -57.93 SS G_CDS: -0.15 Total: -58.09 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.68 -3.98 -75.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228904607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.075 kcal (2) G-P(sol) polarization free energy of solvation -71.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds