Wall clock time and date at job start Tue Mar 31 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 109.47189 * 2 1 4 4 C 1.46896 * 109.46876 * 239.99762 * 2 1 3 5 5 C 1.46900 * 109.46950 * 120.00171 * 2 1 3 6 6 C 1.53003 * 109.47180 * 62.31273 * 5 2 1 7 7 H 1.08992 * 109.46997 * 53.21736 * 6 5 2 8 8 C 1.50706 * 109.46852 * 173.21939 * 6 5 2 9 9 H 1.07999 * 119.99815 * 245.58826 * 8 6 5 10 10 C 1.37876 * 119.99954 * 65.58840 * 8 6 5 11 11 N 1.31516 * 119.99721 * 200.01001 * 10 8 6 12 12 Si 1.86798 * 120.00306 * 20.00648 * 10 8 6 13 13 H 1.48496 * 109.46934 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47249 * 300.00065 * 12 10 8 15 15 H 1.48505 * 109.47004 * 60.00154 * 12 10 8 16 16 O 1.42899 * 109.47074 * 293.21349 * 6 5 2 17 17 C 1.36082 * 116.99949 * 156.89786 * 16 6 5 18 18 C 1.35119 * 120.55904 * 359.08713 * 17 16 6 19 19 O 1.34013 * 120.85867 * 179.97438 * 18 17 16 20 20 C 1.33783 * 122.06296 * 359.97438 * 19 18 17 21 21 C 1.50694 * 119.48550 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46895 * 269.99716 * 21 20 19 23 23 C 1.34836 * 121.03024 * 359.97281 * 20 19 18 24 24 C 1.41729 * 119.01726 * 359.81405 * 23 20 19 25 25 O 1.22170 * 120.92916 * 180.20904 * 24 23 20 26 26 H 1.09002 * 109.46811 * 287.26255 * 1 2 3 27 27 H 1.09000 * 109.47079 * 47.26319 * 1 2 3 28 28 H 1.08996 * 109.47080 * 167.26563 * 1 2 3 29 29 H 1.08996 * 109.46851 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46856 * 299.99822 * 3 2 1 31 31 H 1.09005 * 109.46949 * 60.00130 * 3 2 1 32 32 H 1.08997 * 109.47467 * 300.00279 * 4 2 1 33 33 H 1.09001 * 109.47330 * 60.00080 * 4 2 1 34 34 H 1.09002 * 109.46825 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47254 * 302.31372 * 5 2 1 36 36 H 1.09000 * 109.46843 * 182.31280 * 5 2 1 37 37 H 0.97003 * 119.99959 * 354.94513 * 11 10 8 38 38 H 1.08000 * 119.57003 * 359.97438 * 18 17 16 39 39 H 1.09004 * 109.47545 * 29.99390 * 21 20 19 40 40 H 1.08998 * 109.47448 * 150.00214 * 21 20 19 41 41 H 0.96708 * 114.00247 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.49425 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9588 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6925 1.1994 6 6 1.4968 -2.1509 1.1706 7 1 1.7910 -2.6065 0.2252 8 6 2.1346 -2.9024 2.3106 9 1 2.8413 -3.6934 2.1076 10 6 1.8159 -2.5801 3.6127 11 7 2.6213 -2.9285 4.5923 12 14 0.2403 -1.6485 3.9856 13 1 0.1314 -1.4264 5.4498 14 1 0.2628 -0.3383 3.2869 15 1 -0.9254 -2.4398 3.5163 16 8 0.0748 -2.2028 1.3024 17 6 -0.5494 -3.3149 0.8276 18 6 0.1610 -4.3052 0.2442 19 8 -0.4475 -5.4032 -0.2249 20 6 -1.7719 -5.5724 -0.1399 21 6 -2.3955 -6.8307 -0.6863 22 8 -2.7457 -6.6322 -2.0575 23 6 -2.5573 -4.6350 0.4279 24 6 -1.9598 -3.4576 0.9432 25 8 -2.6378 -2.5874 1.4682 26 1 -0.3633 0.3050 0.9814 27 1 -0.3633 0.6974 -0.7548 28 1 -0.3633 -1.0024 -0.2265 29 1 3.0487 1.3849 -0.0005 30 1 1.5954 1.8987 -0.8900 31 1 1.5954 1.8988 0.8900 32 1 1.5953 -1.7202 -1.1994 33 1 1.5954 -0.1787 -2.0894 34 1 3.0487 -0.6921 -1.1996 35 1 1.5619 -0.2033 2.0889 36 1 3.0479 -0.6568 1.2204 37 1 3.4012 -3.4750 4.4079 38 1 1.2331 -4.2107 0.1548 39 1 -1.6836 -7.6525 -0.6085 40 1 -3.2914 -7.0706 -0.1137 41 1 -3.1529 -7.4035 -2.4751 42 1 -3.6255 -4.7807 0.4923 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231282033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:56 Heat of formation + Delta-G solvation = -8.432370 kcal Electronic energy + Delta-G solvation = -26354.720058 eV Core-core repulsion = 22613.942079 eV Total energy + Delta-G solvation = -3740.777979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.31588 -42.75031 -40.19581 -39.17708 -37.92526 -35.35456 -33.93368 -32.93929 -31.82100 -29.69076 -29.58845 -28.04233 -27.76290 -25.81863 -24.37088 -23.71005 -22.66892 -20.73816 -19.70599 -19.10995 -18.72073 -18.33701 -18.04282 -17.81310 -17.44557 -17.30464 -16.81187 -16.21710 -16.10861 -15.50973 -15.37693 -15.13550 -15.03644 -14.86791 -14.77876 -14.41670 -14.11366 -13.69017 -13.53735 -13.39263 -13.30199 -13.17959 -13.13276 -12.86797 -12.73582 -12.37446 -12.34940 -11.60137 -11.29853 -11.18763 -10.93514 -10.70064 -10.56452 -9.27882 -8.91255 -6.80155 -0.31135 0.03265 0.82777 1.12604 1.24429 1.48749 1.71579 2.05203 2.25625 2.31516 2.67085 2.87914 2.93540 3.02331 3.15060 3.30697 3.51119 3.70242 3.80700 3.85176 4.02145 4.08522 4.15441 4.18820 4.24381 4.29277 4.35113 4.37550 4.45360 4.47064 4.53173 4.59061 4.66781 4.74586 4.76472 4.82209 4.97919 5.29649 5.81123 5.96140 6.04264 6.37037 6.63947 6.76964 7.10639 8.40996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.261 5.261 3 C -0.047 4.047 4 C -0.055 4.055 5 C 0.006 3.994 6 C 0.150 3.850 7 H 0.096 0.904 8 C -0.628 4.628 9 H 0.054 0.946 10 C 0.020 3.980 11 N -0.911 5.911 12 Si 1.080 2.920 13 H -0.338 1.338 14 H -0.223 1.223 15 H -0.290 1.290 16 O -0.308 6.308 17 C -0.051 4.051 18 C 0.013 3.987 19 O -0.194 6.194 20 C 0.147 3.853 21 C 0.126 3.874 22 O -0.581 6.581 23 C -0.309 4.309 24 C 0.390 3.610 25 O -0.523 6.523 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.104 0.896 29 H 0.133 0.867 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.161 0.839 37 H 0.270 0.730 38 H 0.224 0.776 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.415 0.585 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 7.353 -20.798 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.081 4.919 3 C -0.187 4.187 4 C -0.195 4.195 5 C -0.115 4.115 6 C 0.096 3.904 7 H 0.114 0.886 8 C -0.665 4.665 9 H 0.072 0.928 10 C -0.187 4.187 11 N -0.544 5.544 12 Si 0.911 3.089 13 H -0.269 1.269 14 H -0.148 1.148 15 H -0.217 1.217 16 O -0.225 6.225 17 C -0.098 4.098 18 C -0.053 4.053 19 O -0.096 6.096 20 C 0.097 3.903 21 C 0.049 3.951 22 O -0.393 6.393 23 C -0.329 4.329 24 C 0.282 3.718 25 O -0.412 6.412 26 H 0.116 0.884 27 H 0.165 0.835 28 H 0.122 0.878 29 H 0.151 0.849 30 H 0.163 0.837 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.179 0.821 37 H 0.080 0.920 38 H 0.240 0.760 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.269 0.731 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.165 9.053 -19.265 21.287 hybrid contribution 0.744 -1.779 -0.014 1.929 sum 0.579 7.274 -19.279 20.613 Atomic orbital electron populations 1.24313 0.76910 1.08951 1.08629 1.46059 1.14912 1.16164 1.14725 1.24323 1.06233 0.78365 1.09748 1.24364 1.06473 1.01653 0.86995 1.24538 1.05510 0.93181 0.88249 1.20971 0.76417 0.93455 0.99592 0.88640 1.22167 1.29183 1.23128 0.92034 0.92758 1.26533 1.01209 0.97609 0.93347 1.70981 1.13466 1.32454 1.37476 0.83491 0.73627 0.78252 0.73536 1.26880 1.14761 1.21748 1.86156 1.24431 1.35229 1.76687 1.20585 0.94198 0.92271 1.02774 1.24258 0.98767 0.83774 0.98462 1.82926 1.21386 1.38789 1.66459 1.22779 0.79890 0.96403 0.91203 1.21119 1.00128 0.89558 0.84317 1.86436 1.84284 1.45292 1.23292 1.22723 1.03565 0.96367 1.10274 1.17694 0.87348 0.87781 0.78935 1.90797 1.66430 1.43860 1.40142 0.88413 0.83537 0.87790 0.84875 0.83740 0.87105 0.88097 0.83530 0.84397 0.86982 0.82102 0.92014 0.75990 0.88593 0.86799 0.73124 0.81131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.86 7.02 127.69 0.90 1.76 16 2 N -0.26 6.11 0.05 ******* -0.07 6.04 16 3 C -0.05 1.39 7.99 127.69 1.02 2.41 16 4 C -0.05 1.53 7.58 127.69 0.97 2.50 16 5 C 0.01 -0.07 3.49 86.30 0.30 0.23 16 6 C 0.15 -0.13 1.38 29.85 0.04 -0.09 16 7 H 0.10 -0.85 3.88 -2.39 -0.01 -0.85 16 8 C -0.63 -9.41 8.60 25.60 0.22 -9.19 16 9 H 0.05 1.09 8.06 -2.91 -0.02 1.06 16 10 C 0.02 0.49 5.32 84.65 0.45 0.94 16 11 N -0.91 -29.66 13.70 21.45 0.29 -29.36 16 12 Si 1.08 22.37 24.88 68.60 1.71 24.08 16 13 H -0.34 -9.61 7.11 99.48 0.71 -8.90 16 14 H -0.22 -1.95 5.59 99.48 0.56 -1.39 16 15 H -0.29 -7.29 6.63 99.48 0.66 -6.63 16 16 O -0.31 -1.43 2.84 -80.12 -0.23 -1.66 16 17 C -0.05 -0.35 5.99 22.54 0.14 -0.22 16 18 C 0.01 0.03 10.17 67.10 0.68 0.71 16 19 O -0.19 -0.36 9.73 5.20 0.05 -0.31 16 20 C 0.15 0.18 6.58 24.90 0.16 0.34 16 21 C 0.13 -0.81 7.35 71.23 0.52 -0.29 16 22 O -0.58 3.17 13.64 -148.98 -2.03 1.14 16 23 C -0.31 -1.77 9.61 22.35 0.21 -1.56 16 24 C 0.39 4.65 6.81 24.13 0.16 4.82 16 25 O -0.52 -10.17 17.55 8.49 0.15 -10.02 16 26 H 0.10 -1.27 7.88 -2.39 -0.02 -1.29 16 27 H 0.15 -3.87 7.94 -2.39 -0.02 -3.89 16 28 H 0.10 -1.33 5.43 -2.39 -0.01 -1.34 16 29 H 0.13 -4.28 8.14 -2.39 -0.02 -4.30 16 30 H 0.14 -5.03 8.05 -2.39 -0.02 -5.05 16 31 H 0.11 -3.03 8.14 -2.38 -0.02 -3.05 16 32 H 0.10 -2.46 5.86 -2.39 -0.01 -2.47 16 33 H 0.15 -4.92 8.14 -2.39 -0.02 -4.94 16 34 H 0.14 -4.29 8.14 -2.39 -0.02 -4.31 16 35 H 0.11 -0.70 4.89 -2.39 -0.01 -0.71 16 36 H 0.16 -2.43 8.12 -2.39 -0.02 -2.45 16 37 H 0.27 8.76 8.73 -92.71 -0.81 7.95 16 38 H 0.22 -0.64 5.64 -2.91 -0.02 -0.65 16 39 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.11 -1.22 8.06 -2.39 -0.02 -1.24 16 41 H 0.42 -6.33 9.12 -74.05 -0.68 -7.01 16 42 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 Total: 0.00 -65.45 330.06 5.79 -59.66 By element: Atomic # 1 Polarization: -52.07 SS G_CDS: 0.14 Total: -51.93 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.78 Total: 2.38 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.23 Total: -23.32 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -2.06 Total: -10.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: 1.71 Total: 24.08 kcal Total: -65.45 5.79 -59.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231282033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.230 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds