Wall clock time and date at job start Tue Mar 31 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.70051 * 2 1 4 4 C 1.53346 * 109.67255 * 239.48588 * 2 1 3 5 5 C 1.52925 * 108.67438 * 172.73763 * 4 2 1 6 6 N 1.45748 * 110.49045 * 50.74790 * 5 4 2 7 7 C 1.33239 * 124.07048 * 340.85405 * 6 5 4 8 8 O 1.21279 * 118.15796 * 182.29368 * 7 6 5 9 9 C 1.50174 * 123.59661 * 2.37374 * 7 6 5 10 10 H 1.09004 * 109.39768 * 102.37249 * 9 7 6 11 11 N 1.46499 * 109.40358 * 222.20285 * 9 7 6 12 12 C 1.34777 * 120.00065 * 275.17124 * 11 9 7 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.50700 * 109.46769 * 179.72341 * 15 14 12 17 17 O 1.21284 * 120.00579 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99600 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99555 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00404 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00220 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46976 * 90.00113 * 23 21 19 25 25 H 1.48495 * 109.47491 * 210.00002 * 23 21 19 26 26 H 1.48492 * 109.47419 * 330.00452 * 23 21 19 27 27 H 1.08997 * 109.47167 * 299.48117 * 1 2 3 28 28 H 1.08994 * 109.47072 * 59.48383 * 1 2 3 29 29 H 1.09000 * 109.46792 * 179.48503 * 1 2 3 30 30 H 1.09005 * 109.60442 * 292.48672 * 4 2 1 31 31 H 1.08991 * 109.60486 * 52.81303 * 4 2 1 32 32 H 1.08994 * 109.30229 * 171.06669 * 5 4 2 33 33 H 1.09000 * 109.29623 * 290.43586 * 5 4 2 34 34 H 0.97001 * 117.94628 * 160.92675 * 6 5 4 35 35 H 0.97000 * 120.00386 * 95.17493 * 11 9 7 36 36 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 38 38 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 39 39 H 0.96995 * 120.00445 * 0.02562 * 18 16 15 40 40 H 0.97000 * 120.00497 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0463 -0.7332 -1.2440 5 6 3.5643 -0.5639 -1.3174 6 7 4.1795 -0.9197 -0.0449 7 6 3.5212 -0.9776 1.1121 8 8 4.1489 -1.2448 2.1149 9 6 2.0454 -0.7319 1.2417 10 1 1.5270 -1.6856 1.3410 11 7 1.7908 0.0866 2.4297 12 6 1.6727 -0.4982 3.6383 13 8 1.7780 -1.7051 3.7426 14 7 1.4379 0.2547 4.7312 15 6 1.3157 -0.3804 6.0457 16 6 1.0631 0.6747 7.0917 17 8 0.9927 1.8422 6.7709 18 7 0.9156 0.3208 8.3838 19 6 0.6863 1.2806 9.3355 20 1 0.6236 2.3203 9.0498 21 6 0.5337 0.9158 10.6675 22 7 0.6095 -0.3492 11.0152 23 14 0.2206 2.2235 11.9641 24 1 -1.2420 2.4336 12.1122 25 1 0.7909 1.7806 13.2617 26 1 0.8639 3.4960 11.5493 27 1 -0.3633 0.5057 0.8946 28 1 -0.3633 0.5218 -0.8853 29 1 -0.3633 -1.0276 -0.0092 30 1 1.7996 -1.7926 -1.1728 31 1 1.5850 -0.3094 -2.1359 32 1 3.9611 -1.2079 -2.1020 33 1 3.8000 0.4738 -1.5538 34 1 5.1273 -1.1262 -0.0402 35 1 1.7070 1.0494 2.3466 36 1 1.3542 1.2175 4.6480 37 1 0.4845 -1.0855 6.0327 38 1 2.2385 -0.9109 6.2802 39 1 0.9722 -0.6129 8.6405 40 1 0.5025 -0.6040 11.9450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323308891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:47 Heat of formation + Delta-G solvation = -138.455496 kcal Electronic energy + Delta-G solvation = -24040.486972 eV Core-core repulsion = 20274.593346 eV Total energy + Delta-G solvation = -3765.893626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.93851 -40.76275 -39.86998 -37.94166 -36.32770 -36.04223 -35.26331 -33.72109 -33.35059 -30.30224 -29.29276 -28.06606 -26.31418 -24.34276 -22.78810 -21.83606 -21.38587 -20.62714 -20.11829 -19.38196 -18.39993 -17.70419 -17.51346 -17.38862 -16.65995 -16.56074 -16.24078 -15.77297 -15.52154 -15.44885 -15.25428 -15.13167 -14.74690 -14.15145 -13.95983 -13.79517 -13.56350 -13.54649 -13.21485 -12.90491 -12.65040 -12.45951 -12.30620 -12.12622 -11.84252 -11.72532 -11.57164 -11.42609 -11.24771 -10.56568 -10.34675 -10.10731 -10.02568 -9.86138 -8.50986 -6.01575 1.26374 1.36424 1.42710 1.55883 1.81683 1.88801 2.05264 2.28771 2.42898 3.02301 3.15948 3.29182 3.47120 3.60985 3.80339 3.94253 4.19264 4.27566 4.41509 4.44540 4.50885 4.54269 4.64782 4.87944 4.99138 5.02503 5.11122 5.25232 5.31023 5.37446 5.38614 5.45246 5.84798 5.88271 5.92432 6.31505 6.47451 6.98888 7.02706 7.22451 7.42043 7.54055 7.93302 8.66175 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.037050 B = 0.002633 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.562926 B =10633.370975 C =10903.175723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.126 4.126 5 C 0.101 3.899 6 N -0.710 5.710 7 C 0.492 3.508 8 O -0.593 6.593 9 C 0.160 3.840 10 H 0.101 0.899 11 N -0.716 5.716 12 C 0.709 3.291 13 O -0.622 6.622 14 N -0.723 5.723 15 C 0.142 3.858 16 C 0.436 3.564 17 O -0.622 6.622 18 N -0.559 5.559 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.401 0.599 35 H 0.413 0.587 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.398 0.602 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 0.500 -28.853 28.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.118 0.882 4 C -0.164 4.164 5 C -0.022 4.022 6 N -0.362 5.362 7 C 0.277 3.723 8 O -0.472 6.472 9 C 0.051 3.949 10 H 0.119 0.881 11 N -0.372 5.372 12 C 0.409 3.591 13 O -0.502 6.502 14 N -0.381 5.381 15 C 0.014 3.986 16 C 0.223 3.777 17 O -0.510 6.510 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.213 4.213 22 N -0.558 5.558 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.250 0.750 36 H 0.248 0.752 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.232 0.768 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.462 -0.011 -28.253 28.291 hybrid contribution 0.421 0.480 1.226 1.382 sum 1.883 0.469 -27.026 27.096 Atomic orbital electron populations 1.21818 0.92809 1.02563 1.03027 1.21590 0.97725 1.00482 0.91230 0.88219 1.22014 0.94204 1.01847 0.98357 1.21773 0.93886 1.02774 0.83721 1.45591 1.13529 1.69152 1.07947 1.21127 0.91637 0.76362 0.83215 1.90803 1.68935 1.49674 1.37806 1.20838 0.90498 0.97558 0.86010 0.88141 1.44602 1.77311 1.10898 1.04431 1.15904 0.77258 0.84905 0.81056 1.90879 1.59317 1.14201 1.85793 1.44605 1.77209 1.11267 1.04975 1.20559 1.03243 0.93641 0.81188 1.20335 0.83664 0.89731 0.84018 1.90453 1.58636 1.20702 1.81237 1.41839 1.61791 1.10435 1.05415 1.19756 1.48413 0.90764 0.87697 0.89464 1.26176 0.96026 0.99330 0.99746 1.69691 1.48934 1.17114 1.20013 0.84835 0.78772 0.77480 0.76687 1.19365 1.19676 1.19414 0.93259 0.89454 0.92684 0.90869 0.85611 0.87739 0.89493 0.76371 0.75005 0.75242 0.88833 0.89931 0.76750 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.13 71.98 0.66 -0.73 16 2 C -0.09 -0.91 2.30 -10.65 -0.02 -0.94 16 3 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 4 C -0.13 -0.59 5.32 30.69 0.16 -0.42 16 5 C 0.10 0.50 7.17 86.50 0.62 1.12 16 6 N -0.71 -10.75 5.44 -467.48 -2.54 -13.30 16 7 C 0.49 12.59 7.44 87.73 0.65 13.24 16 8 O -0.59 -22.85 16.55 -1.81 -0.03 -22.88 16 9 C 0.16 3.46 2.07 44.10 0.09 3.55 16 10 H 0.10 2.58 7.53 -2.38 -0.02 2.56 16 11 N -0.72 -18.38 4.71 -462.08 -2.17 -20.56 16 12 C 0.71 25.57 7.99 179.05 1.43 27.00 16 13 O -0.62 -27.35 15.56 -2.80 -0.04 -27.39 16 14 N -0.72 -26.47 5.53 -482.30 -2.67 -29.14 16 15 C 0.14 5.77 6.15 85.63 0.53 6.29 16 16 C 0.44 21.15 7.85 87.66 0.69 21.84 16 17 O -0.62 -33.18 15.24 -3.04 -0.05 -33.22 16 18 N -0.56 -29.27 5.29 -306.99 -1.62 -30.89 16 19 C -0.34 -19.05 9.68 84.04 0.81 -18.24 16 20 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -50.07 13.05 21.66 0.28 -49.78 16 23 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H 0.05 0.63 7.97 -2.39 -0.02 0.62 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.46 8.12 -2.38 -0.02 0.44 16 31 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.40 5.80 8.80 -92.71 -0.82 4.99 16 35 H 0.41 8.09 8.60 -92.71 -0.80 7.29 16 36 H 0.41 14.27 7.45 -92.71 -0.69 13.58 16 37 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 38 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 40 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -82.55 339.78 -2.65 -85.20 By element: Atomic # 1 Polarization: 46.76 SS G_CDS: -1.92 Total: 44.84 kcal Atomic # 6 Polarization: 46.45 SS G_CDS: 6.09 Total: 52.53 kcal Atomic # 7 Polarization: -134.95 SS G_CDS: -8.73 Total: -143.68 kcal Atomic # 8 Polarization: -83.38 SS G_CDS: -0.12 Total: -83.50 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -82.55 -2.65 -85.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323308891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.255 kcal (2) G-P(sol) polarization free energy of solvation -82.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds