Wall clock time and date at job start Tue Mar 31 2020 03:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.70399 * 2 1 4 4 C 1.53343 * 109.66994 * 120.51641 * 2 1 3 5 5 C 1.52923 * 108.67454 * 187.26308 * 4 2 1 6 6 N 1.45762 * 110.48653 * 309.24430 * 5 4 2 7 7 C 1.33355 * 124.10390 * 19.07471 * 6 5 4 8 8 O 1.21277 * 118.24190 * 177.77708 * 7 6 5 9 9 C 1.50173 * 123.50975 * 357.77826 * 7 6 5 10 10 H 1.08995 * 109.33619 * 137.66563 * 9 7 6 11 11 N 1.46506 * 109.40139 * 257.45597 * 9 7 6 12 12 C 1.34779 * 119.99518 * 275.42945 * 11 9 7 13 13 O 1.21582 * 120.00164 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99899 * 179.97438 * 12 11 9 15 15 C 1.46495 * 120.00320 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47395 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99735 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99823 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99952 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99824 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00239 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99846 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 239.99930 * 23 21 19 26 26 H 1.48500 * 109.47454 * 119.99923 * 23 21 19 27 27 H 1.08997 * 109.47634 * 180.52000 * 1 2 3 28 28 H 1.09005 * 109.47131 * 300.52070 * 1 2 3 29 29 H 1.08998 * 109.47191 * 60.51854 * 1 2 3 30 30 H 1.08996 * 109.60744 * 307.01490 * 4 2 1 31 31 H 1.08998 * 109.60638 * 67.50691 * 4 2 1 32 32 H 1.08999 * 109.30115 * 69.55402 * 5 4 2 33 33 H 1.08999 * 109.30440 * 188.93176 * 5 4 2 34 34 H 0.96993 * 117.94681 * 199.07158 * 6 5 4 35 35 H 0.96997 * 120.00333 * 95.42029 * 11 9 7 36 36 H 0.97009 * 120.00213 * 359.97438 * 14 12 11 37 37 H 1.09005 * 109.47411 * 59.99731 * 15 14 12 38 38 H 1.09003 * 109.47236 * 300.00112 * 15 14 12 39 39 H 0.96996 * 120.00501 * 359.97438 * 18 16 15 40 40 H 0.96993 * 120.00098 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0461 -0.7332 1.2439 5 6 3.5642 -0.5639 1.3174 6 7 4.1794 -0.9200 0.0449 7 6 3.5209 -0.9795 -1.1133 8 8 4.1474 -1.2479 -2.1164 9 6 2.0453 -0.7320 -1.2417 10 1 1.8572 -0.1224 -2.1254 11 7 1.3469 -2.0128 -1.3763 12 6 1.2330 -2.5942 -2.5869 13 8 1.7094 -2.0555 -3.5672 14 7 0.5910 -3.7727 -2.7107 15 6 0.4666 -4.4044 -4.0266 16 6 -0.2874 -5.7023 -3.8916 17 8 -0.6824 -6.0637 -2.8033 18 7 -0.5227 -6.4613 -4.9802 19 6 -1.2090 -7.6417 -4.8575 20 1 -1.5608 -7.9636 -3.8884 21 6 -1.4521 -8.4240 -5.9798 22 7 -1.0245 -8.0321 -7.1590 23 14 -2.3880 -10.0320 -5.8127 24 1 -2.7576 -10.2441 -4.3901 25 1 -1.5309 -11.1537 -6.2735 26 1 -3.6189 -9.9768 -6.6415 27 1 -0.3634 -1.0276 0.0093 28 1 -0.3634 0.5219 0.8853 29 1 -0.3633 0.5057 -0.8946 30 1 1.5872 -0.3075 2.1362 31 1 1.7994 -1.7925 1.1728 32 1 3.8000 0.4737 1.5537 33 1 3.9610 -1.2080 2.1021 34 1 5.1271 -1.1265 0.0401 35 1 0.9667 -2.4425 -0.5942 36 1 0.2112 -4.2028 -1.9285 37 1 1.4598 -4.6019 -4.4302 38 1 -0.0733 -3.7385 -4.6998 39 1 -0.2071 -6.1721 -5.8506 40 1 -0.5396 -7.1966 -7.2460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323308894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:53 Heat of formation + Delta-G solvation = -103.454441 kcal Electronic energy + Delta-G solvation = -24230.393074 eV Core-core repulsion = 20466.017208 eV Total energy + Delta-G solvation = -3764.375866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.09549 -39.43645 -38.26645 -37.22785 -35.20623 -34.64124 -33.75129 -32.73569 -31.21234 -29.61534 -28.24133 -26.85460 -24.29791 -23.86975 -21.79889 -21.20610 -19.92419 -19.26370 -18.73336 -18.02608 -17.39833 -16.79956 -16.40706 -15.93310 -15.45673 -15.30115 -15.04260 -14.74140 -14.30132 -14.22161 -13.82642 -13.76630 -13.65868 -13.53816 -13.05615 -12.81465 -12.37355 -12.27163 -12.01432 -11.68673 -11.35504 -11.27544 -11.09391 -10.99598 -10.31802 -10.26218 -10.05599 -9.93284 -9.65690 -9.33115 -9.12160 -8.67784 -8.65302 -8.13501 -6.82738 -3.97253 2.18114 2.93395 3.02912 3.25736 3.31719 3.43248 3.50559 3.72926 4.09561 4.15209 4.18599 4.21867 4.33138 4.41973 4.77540 4.79382 4.91173 4.99796 5.19216 5.20090 5.27525 5.29335 5.38914 5.54441 5.68893 5.79511 5.87297 5.90167 5.94538 6.30430 6.52469 6.69564 6.93560 7.08511 7.70510 7.99505 8.05123 8.16882 8.48322 8.66254 8.77724 9.36992 9.70946 10.60340 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.002780 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.599742 B =10069.490291 C =10342.293749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.136 4.136 5 C 0.110 3.890 6 N -0.724 5.724 7 C 0.501 3.499 8 O -0.523 6.523 9 C 0.164 3.836 10 H 0.120 0.880 11 N -0.733 5.733 12 C 0.703 3.297 13 O -0.575 6.575 14 N -0.723 5.723 15 C 0.129 3.871 16 C 0.432 3.568 17 O -0.592 6.592 18 N -0.562 5.562 19 C -0.386 4.386 20 H 0.102 0.898 21 C -0.007 4.007 22 N -0.895 5.895 23 Si 1.098 2.902 24 H -0.283 1.283 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.398 0.602 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.380 0.620 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 17.243 18.426 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.112 0.888 4 C -0.174 4.174 5 C -0.014 4.014 6 N -0.378 5.378 7 C 0.284 3.716 8 O -0.396 6.396 9 C 0.054 3.946 10 H 0.138 0.862 11 N -0.392 5.392 12 C 0.403 3.597 13 O -0.451 6.451 14 N -0.381 5.381 15 C 0.001 3.999 16 C 0.218 3.782 17 O -0.478 6.478 18 N -0.198 5.198 19 C -0.515 4.515 20 H 0.120 0.880 21 C -0.210 4.210 22 N -0.533 5.533 23 Si 0.924 3.076 24 H -0.209 1.209 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.234 0.766 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.213 0.787 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.167 16.051 16.783 23.791 hybrid contribution 0.910 1.033 1.211 1.834 sum 6.078 17.085 17.993 25.546 Atomic orbital electron populations 1.21779 0.93218 1.02778 1.02486 1.21639 0.97618 1.00002 0.93107 0.88819 1.22008 0.94541 1.01871 0.98955 1.21368 0.93757 1.00851 0.85437 1.45567 1.13394 1.71169 1.07679 1.20749 0.90883 0.77095 0.82847 1.90837 1.67676 1.45936 1.35156 1.20709 0.87065 0.85978 1.00828 0.86240 1.44865 1.61613 1.23714 1.09044 1.15843 0.79351 0.81061 0.83475 1.90969 1.52736 1.64756 1.36629 1.44700 1.60330 1.21586 1.11481 1.20775 1.01162 0.93612 0.84384 1.19679 0.86323 0.86630 0.85521 1.90487 1.57097 1.73750 1.26479 1.41863 1.49674 1.20287 1.08006 1.20635 1.34272 0.97741 0.98877 0.88010 1.26591 0.98619 1.04641 0.91163 1.70828 1.35202 1.23315 1.23958 0.83033 0.75821 0.73153 0.75641 1.20864 1.20902 1.20890 0.92007 0.91942 0.91859 0.89139 0.90796 0.91520 0.90474 0.76708 0.76639 0.75720 0.90029 0.89997 0.78686 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.91 37.16 0.33 -0.53 16 2 C -0.10 -0.64 2.58 -90.40 -0.23 -0.88 16 3 H 0.09 0.48 8.13 -51.93 -0.42 0.06 16 4 C -0.14 -0.60 5.28 -26.59 -0.14 -0.74 16 5 C 0.11 0.50 7.17 -4.48 -0.03 0.47 16 6 N -0.72 -6.09 5.45 -61.38 -0.33 -6.43 16 7 C 0.50 6.39 7.24 -11.87 -0.09 6.30 16 8 O -0.52 -9.61 17.35 5.54 0.10 -9.51 16 9 C 0.16 1.78 2.27 -69.30 -0.16 1.63 16 10 H 0.12 1.54 7.58 -51.93 -0.39 1.14 16 11 N -0.73 -8.85 4.21 -60.03 -0.25 -9.11 16 12 C 0.70 11.94 8.51 -86.92 -0.74 11.20 16 13 O -0.57 -12.02 15.58 5.28 0.08 -11.94 16 14 N -0.72 -12.52 5.53 -66.41 -0.37 -12.88 16 15 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 16 C 0.43 10.12 7.85 -10.98 -0.09 10.03 16 17 O -0.59 -15.36 15.24 5.55 0.08 -15.28 16 18 N -0.56 -14.09 5.28 -10.96 -0.06 -14.15 16 19 C -0.39 -10.71 9.68 -14.93 -0.14 -10.85 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C -0.01 -0.18 5.50 -17.47 -0.10 -0.27 16 22 N -0.89 -24.99 13.68 55.50 0.76 -24.23 16 23 Si 1.10 24.01 29.92 -169.99 -5.09 18.92 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.06 0.40 6.79 -51.93 -0.35 0.05 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.38 6.96 -51.93 -0.36 0.02 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.40 3.14 8.80 -40.82 -0.36 2.78 16 35 H 0.40 3.74 6.57 -40.82 -0.27 3.47 16 36 H 0.41 6.70 7.45 -40.82 -0.30 6.40 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.38 8.88 6.73 -40.82 -0.27 8.61 16 40 H 0.26 7.13 6.77 -40.82 -0.28 6.85 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -37.54 334.66 -6.59 -44.13 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -5.14 Total: 16.63 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: -1.42 Total: 18.80 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.25 Total: -66.79 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: 0.26 Total: -36.74 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.09 Total: 18.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.54 -6.59 -44.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323308894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.323 kcal (2) G-P(sol) polarization free energy of solvation -37.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds