Wall clock time and date at job start Tue Mar 31 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.70399 * 2 1 4 4 C 1.53343 * 109.66994 * 120.51641 * 2 1 3 5 5 C 1.52923 * 108.67454 * 187.26308 * 4 2 1 6 6 N 1.45762 * 110.48653 * 309.24430 * 5 4 2 7 7 C 1.33355 * 124.10390 * 19.07471 * 6 5 4 8 8 O 1.21277 * 118.24190 * 177.77708 * 7 6 5 9 9 C 1.50173 * 123.50975 * 357.77826 * 7 6 5 10 10 H 1.08995 * 109.33619 * 137.66563 * 9 7 6 11 11 N 1.46506 * 109.40139 * 257.45597 * 9 7 6 12 12 C 1.34779 * 119.99518 * 275.42945 * 11 9 7 13 13 O 1.21582 * 120.00164 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99899 * 179.97438 * 12 11 9 15 15 C 1.46495 * 120.00320 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47395 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99735 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99823 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99952 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99824 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00239 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99846 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 239.99930 * 23 21 19 26 26 H 1.48500 * 109.47454 * 119.99923 * 23 21 19 27 27 H 1.08997 * 109.47634 * 180.52000 * 1 2 3 28 28 H 1.09005 * 109.47131 * 300.52070 * 1 2 3 29 29 H 1.08998 * 109.47191 * 60.51854 * 1 2 3 30 30 H 1.08996 * 109.60744 * 307.01490 * 4 2 1 31 31 H 1.08998 * 109.60638 * 67.50691 * 4 2 1 32 32 H 1.08999 * 109.30115 * 69.55402 * 5 4 2 33 33 H 1.08999 * 109.30440 * 188.93176 * 5 4 2 34 34 H 0.96993 * 117.94681 * 199.07158 * 6 5 4 35 35 H 0.96997 * 120.00333 * 95.42029 * 11 9 7 36 36 H 0.97009 * 120.00213 * 359.97438 * 14 12 11 37 37 H 1.09005 * 109.47411 * 59.99731 * 15 14 12 38 38 H 1.09003 * 109.47236 * 300.00112 * 15 14 12 39 39 H 0.96996 * 120.00501 * 359.97438 * 18 16 15 40 40 H 0.96993 * 120.00098 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0461 -0.7332 1.2439 5 6 3.5642 -0.5639 1.3174 6 7 4.1794 -0.9200 0.0449 7 6 3.5209 -0.9795 -1.1133 8 8 4.1474 -1.2479 -2.1164 9 6 2.0453 -0.7320 -1.2417 10 1 1.8572 -0.1224 -2.1254 11 7 1.3469 -2.0128 -1.3763 12 6 1.2330 -2.5942 -2.5869 13 8 1.7094 -2.0555 -3.5672 14 7 0.5910 -3.7727 -2.7107 15 6 0.4666 -4.4044 -4.0266 16 6 -0.2874 -5.7023 -3.8916 17 8 -0.6824 -6.0637 -2.8033 18 7 -0.5227 -6.4613 -4.9802 19 6 -1.2090 -7.6417 -4.8575 20 1 -1.5608 -7.9636 -3.8884 21 6 -1.4521 -8.4240 -5.9798 22 7 -1.0245 -8.0321 -7.1590 23 14 -2.3880 -10.0320 -5.8127 24 1 -2.7576 -10.2441 -4.3901 25 1 -1.5309 -11.1537 -6.2735 26 1 -3.6189 -9.9768 -6.6415 27 1 -0.3634 -1.0276 0.0093 28 1 -0.3634 0.5219 0.8853 29 1 -0.3633 0.5057 -0.8946 30 1 1.5872 -0.3075 2.1362 31 1 1.7994 -1.7925 1.1728 32 1 3.8000 0.4737 1.5537 33 1 3.9610 -1.2080 2.1021 34 1 5.1271 -1.1265 0.0401 35 1 0.9667 -2.4425 -0.5942 36 1 0.2112 -4.2028 -1.9285 37 1 1.4598 -4.6019 -4.4302 38 1 -0.0733 -3.7385 -4.6998 39 1 -0.2071 -6.1721 -5.8506 40 1 -0.5396 -7.1966 -7.2460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323308894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:51 Heat of formation + Delta-G solvation = -135.903938 kcal Electronic energy + Delta-G solvation = -24231.800190 eV Core-core repulsion = 20466.017208 eV Total energy + Delta-G solvation = -3765.782982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.06752 -40.86932 -40.01390 -38.10771 -36.65229 -36.03303 -35.38726 -33.66046 -33.22200 -30.38456 -29.30057 -28.11021 -26.17741 -24.52595 -22.56117 -22.44677 -21.73050 -20.16861 -20.09048 -19.97037 -18.22787 -17.89967 -17.62085 -17.41435 -16.89514 -16.68227 -16.21094 -15.88265 -15.65620 -15.63344 -15.36507 -15.09645 -14.62984 -14.18051 -14.16641 -13.92342 -13.67809 -13.38380 -13.35471 -12.80656 -12.78221 -12.22568 -11.97966 -11.90946 -11.84420 -11.67186 -11.59532 -11.50543 -11.32599 -10.63505 -10.42752 -10.19330 -10.06319 -9.93713 -8.97571 -6.13404 1.09218 1.46551 1.55151 1.80579 1.84462 1.87346 1.98056 2.34240 2.40998 2.87477 3.12399 3.22893 3.43408 3.58165 3.72334 3.85474 3.95112 4.29091 4.32790 4.40275 4.42156 4.52014 4.55431 4.85120 4.96217 5.00322 5.10768 5.20034 5.21898 5.31147 5.42105 5.57266 5.74950 5.84047 5.89412 6.27587 6.45156 6.60785 6.89870 7.17288 7.32221 7.44310 7.72569 8.49172 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.002780 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.599742 B =10069.490291 C =10342.293749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.111 0.889 4 C -0.134 4.134 5 C 0.102 3.898 6 N -0.709 5.709 7 C 0.495 3.505 8 O -0.593 6.593 9 C 0.161 3.839 10 H 0.093 0.907 11 N -0.712 5.712 12 C 0.702 3.298 13 O -0.616 6.616 14 N -0.721 5.721 15 C 0.142 3.858 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.411 4.411 20 H 0.082 0.918 21 C -0.040 4.040 22 N -0.913 5.913 23 Si 1.141 2.859 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.272 1.272 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.401 0.599 35 H 0.414 0.586 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.387 0.613 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 17.980 21.099 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.129 0.871 4 C -0.171 4.171 5 C -0.021 4.021 6 N -0.360 5.360 7 C 0.280 3.720 8 O -0.472 6.472 9 C 0.051 3.949 10 H 0.111 0.889 11 N -0.372 5.372 12 C 0.401 3.599 13 O -0.495 6.495 14 N -0.379 5.379 15 C 0.013 3.987 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.540 4.540 20 H 0.100 0.900 21 C -0.239 4.239 22 N -0.552 5.552 23 Si 0.960 3.040 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.197 1.197 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.236 0.764 35 H 0.252 0.748 36 H 0.249 0.751 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.221 0.779 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.790 16.834 19.568 26.253 hybrid contribution 1.087 0.922 0.516 1.516 sum 5.877 17.756 20.084 27.444 Atomic orbital electron populations 1.21785 0.92800 1.02553 1.03029 1.21654 0.97791 1.00354 0.91351 0.87062 1.22078 0.94461 1.01488 0.99100 1.21772 0.93793 1.02913 0.83598 1.45608 1.13581 1.68848 1.07961 1.21040 0.91446 0.76465 0.83080 1.90805 1.69082 1.49551 1.37769 1.20851 0.86375 0.85146 1.02485 0.88873 1.44679 1.60712 1.23863 1.07941 1.16004 0.78820 0.80682 0.84366 1.90946 1.54358 1.65724 1.38502 1.44592 1.60691 1.21810 1.10846 1.20569 1.00688 0.91639 0.85789 1.20305 0.85093 0.87213 0.84637 1.90465 1.57817 1.74639 1.27372 1.41901 1.50170 1.20192 1.08807 1.20651 1.35687 0.99226 0.98424 0.89998 1.27958 0.98503 1.07098 0.90365 1.70905 1.36119 1.23590 1.24558 0.82528 0.75246 0.69915 0.76281 1.19945 1.19838 1.19685 0.92650 0.89392 0.93316 0.85742 0.91410 0.88996 0.88105 0.76392 0.74779 0.75125 0.89660 0.88792 0.77914 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.91 71.98 0.64 -0.71 16 2 C -0.09 -0.90 2.58 -10.65 -0.03 -0.93 16 3 H 0.11 0.77 8.13 -2.39 -0.02 0.75 16 4 C -0.13 -0.65 5.28 30.68 0.16 -0.49 16 5 C 0.10 0.52 7.17 86.49 0.62 1.14 16 6 N -0.71 -10.74 5.45 -467.30 -2.55 -13.28 16 7 C 0.50 12.62 7.24 87.71 0.63 13.25 16 8 O -0.59 -22.79 17.35 -3.01 -0.05 -22.85 16 9 C 0.16 3.44 2.27 44.10 0.10 3.54 16 10 H 0.09 2.51 7.58 -2.39 -0.02 2.50 16 11 N -0.71 -16.91 4.21 -462.09 -1.94 -18.86 16 12 C 0.70 24.06 8.51 179.05 1.52 25.59 16 13 O -0.62 -26.56 15.58 -3.96 -0.06 -26.62 16 14 N -0.72 -24.90 5.53 -482.30 -2.67 -27.57 16 15 C 0.14 5.48 6.15 85.63 0.53 6.01 16 16 C 0.44 20.75 7.85 87.66 0.69 21.44 16 17 O -0.62 -32.11 15.24 -3.05 -0.05 -32.15 16 18 N -0.57 -29.15 5.28 -306.98 -1.62 -30.77 16 19 C -0.41 -23.07 9.68 84.04 0.81 -22.25 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.04 -2.17 5.50 84.93 0.47 -1.70 16 22 N -0.91 -51.06 13.68 21.66 0.30 -50.76 16 23 Si 1.14 47.74 29.92 68.60 2.05 49.79 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H 0.05 0.59 6.79 -2.39 -0.02 0.58 16 28 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.07 0.46 6.96 -2.39 -0.02 0.44 16 32 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.40 5.84 8.80 -92.71 -0.82 5.02 16 35 H 0.41 7.20 6.57 -92.71 -0.61 6.59 16 36 H 0.41 13.39 7.45 -92.70 -0.69 12.70 16 37 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.39 18.42 6.73 -92.71 -0.62 17.79 16 40 H 0.26 14.23 6.77 -92.71 -0.63 13.60 16 Total: -1.00 -84.29 334.66 -1.92 -86.20 By element: Atomic # 1 Polarization: 43.45 SS G_CDS: -1.47 Total: 41.98 kcal Atomic # 6 Polarization: 38.74 SS G_CDS: 6.15 Total: 44.89 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -8.48 Total: -141.24 kcal Atomic # 8 Polarization: -81.46 SS G_CDS: -0.16 Total: -81.62 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.05 Total: 49.79 kcal Total: -84.29 -1.92 -86.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323308894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.701 kcal (2) G-P(sol) polarization free energy of solvation -84.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds