Wall clock time and date at job start Tue Mar 31 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.70210 * 2 1 4 4 C 1.53323 * 109.67553 * 120.50960 * 2 1 3 5 5 C 1.52927 * 108.68568 * 187.25068 * 4 2 1 6 6 N 1.45750 * 110.48316 * 309.24957 * 5 4 2 7 7 C 1.33353 * 124.10902 * 19.09910 * 6 5 4 8 8 O 1.21284 * 118.24449 * 177.74871 * 7 6 5 9 9 C 1.50174 * 123.50910 * 357.73253 * 7 6 5 10 10 H 1.09002 * 109.40185 * 257.55995 * 9 7 6 11 11 N 1.46499 * 109.40325 * 137.72937 * 9 7 6 12 12 C 1.34779 * 119.99707 * 84.99773 * 11 9 7 13 13 O 1.21591 * 120.00286 * 0.02562 * 12 11 9 14 14 N 1.34782 * 119.99814 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99625 * 179.97438 * 14 12 11 16 16 C 1.50708 * 109.46872 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47194 * 300.00675 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00238 * 23 21 19 27 27 H 1.09007 * 109.47262 * 180.51281 * 1 2 3 28 28 H 1.09000 * 109.47144 * 300.51074 * 1 2 3 29 29 H 1.09002 * 109.47553 * 60.51415 * 1 2 3 30 30 H 1.08997 * 109.59583 * 67.48938 * 4 2 1 31 31 H 1.09004 * 109.60191 * 307.00693 * 4 2 1 32 32 H 1.09002 * 109.29908 * 188.94236 * 5 4 2 33 33 H 1.08997 * 109.13294 * 69.45670 * 5 4 2 34 34 H 0.96999 * 117.94833 * 199.07427 * 6 5 4 35 35 H 0.96997 * 120.00426 * 265.00011 * 11 9 7 36 36 H 0.97000 * 119.99760 * 0.02562 * 14 12 11 37 37 H 1.09002 * 109.46941 * 60.00922 * 15 14 12 38 38 H 1.09000 * 109.47767 * 300.00372 * 15 14 12 39 39 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 40 40 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0462 -0.7329 1.2438 5 6 3.5643 -0.5640 1.3172 6 7 4.1793 -0.9203 0.0448 7 6 3.5209 -0.9793 -1.1134 8 8 4.1474 -1.2475 -2.1167 9 6 2.0453 -0.7319 -1.2418 10 1 1.5256 -1.6849 -1.3405 11 7 1.7906 0.0867 -2.4297 12 6 1.6674 -0.4985 -3.6376 13 8 1.7672 -1.7059 -3.7412 14 7 1.4326 0.2545 -4.7304 15 6 1.2992 -0.3816 -6.0434 16 6 1.0429 0.6732 -7.0889 17 8 0.9776 1.8412 -6.7686 18 7 0.8853 0.3184 -8.3795 19 6 0.6527 1.2781 -9.3306 20 1 0.5953 2.3181 -9.0456 21 6 0.4908 0.9124 -10.6613 22 7 0.5611 -0.3532 -11.0082 23 14 0.1731 2.2198 -11.9572 24 1 0.0385 1.5751 -13.2882 25 1 -1.0796 2.9471 -11.6299 26 1 1.3084 3.1766 -11.9837 27 1 -0.3634 -1.0277 0.0092 28 1 -0.3633 0.5217 0.8854 29 1 -0.3634 0.5058 -0.8945 30 1 1.7991 -1.7922 1.1728 31 1 1.5873 -0.3069 2.1361 32 1 3.9610 -1.2082 2.1020 33 1 3.7973 0.4746 1.5517 34 1 5.1270 -1.1271 0.0400 35 1 1.7106 1.0498 -2.3471 36 1 1.3526 1.2177 -4.6477 37 1 0.4661 -1.0841 -6.0238 38 1 2.2189 -0.9151 -6.2838 39 1 0.9372 -0.6157 -8.6356 40 1 0.4476 -0.6085 -11.9372 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323308903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:56 Heat of formation + Delta-G solvation = -106.320638 kcal Electronic energy + Delta-G solvation = -24037.709780 eV Core-core repulsion = 20273.209626 eV Total energy + Delta-G solvation = -3764.500154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95357 -39.33400 -38.07904 -37.10515 -35.21458 -34.30577 -33.56139 -32.79587 -31.31722 -29.52729 -28.17383 -26.81664 -24.49017 -23.62386 -22.01017 -20.58887 -19.83976 -19.51926 -18.28723 -17.86323 -17.55864 -16.75252 -16.47680 -15.54408 -15.18129 -15.12272 -14.78836 -14.64030 -14.37993 -14.13171 -13.89504 -13.80811 -13.56169 -13.35046 -13.13845 -12.58705 -12.13674 -12.09987 -11.88552 -11.72277 -11.58586 -11.31155 -11.17633 -11.06756 -10.47263 -10.27005 -10.23236 -9.91519 -9.57710 -9.30179 -9.03586 -8.56233 -8.54346 -8.04692 -6.46323 -3.88293 2.34692 2.89824 3.07840 3.17314 3.24487 3.28690 3.56820 3.81650 4.10669 4.12754 4.20732 4.26197 4.35835 4.56194 4.84047 4.90444 4.97212 5.00913 5.22231 5.22432 5.30538 5.33392 5.41746 5.51586 5.74170 5.89060 6.00692 6.10461 6.15457 6.36560 6.58837 6.85460 7.06608 7.12856 7.50455 7.97593 8.10448 8.30610 8.51025 8.90597 9.09603 9.45318 9.93456 10.70642 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.037065 B = 0.002632 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.250396 B =10636.258475 C =10905.305531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.130 4.130 5 C 0.110 3.890 6 N -0.726 5.726 7 C 0.498 3.502 8 O -0.522 6.522 9 C 0.164 3.836 10 H 0.120 0.880 11 N -0.732 5.732 12 C 0.711 3.289 13 O -0.583 6.583 14 N -0.723 5.723 15 C 0.129 3.871 16 C 0.430 3.570 17 O -0.599 6.599 18 N -0.550 5.550 19 C -0.305 4.305 20 H 0.104 0.896 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.934 3.066 24 H -0.283 1.283 25 H -0.273 1.273 26 H -0.273 1.273 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.399 0.601 36 H 0.405 0.595 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -0.528 26.587 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.381 5.381 7 C 0.282 3.718 8 O -0.395 6.395 9 C 0.054 3.946 10 H 0.137 0.863 11 N -0.389 5.389 12 C 0.411 3.589 13 O -0.460 6.460 14 N -0.381 5.381 15 C 0.001 3.999 16 C 0.216 3.784 17 O -0.485 6.485 18 N -0.185 5.185 19 C -0.434 4.434 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.536 5.536 23 Si 0.760 3.240 24 H -0.209 1.209 25 H -0.198 1.198 26 H -0.198 1.198 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.233 0.767 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.920 -1.070 25.870 25.963 hybrid contribution 0.284 0.831 -0.685 1.114 sum 2.204 -0.240 25.184 25.282 Atomic orbital electron populations 1.21821 0.93247 1.02746 1.02575 1.21555 0.97520 1.00138 0.92898 0.89721 1.21948 0.94365 1.02098 0.98407 1.21380 0.93808 1.00834 0.85475 1.45582 1.13348 1.71492 1.07649 1.20848 0.91065 0.77007 0.82926 1.90835 1.67600 1.46016 1.35073 1.20583 0.91378 0.97696 0.84967 0.86267 1.44713 1.78863 1.09907 1.05403 1.15730 0.77620 0.85417 0.80126 1.90910 1.57668 1.12400 1.85038 1.44692 1.76794 1.11074 1.05498 1.20778 1.02781 0.94869 0.81468 1.19777 0.85346 0.89353 0.83917 1.90480 1.58046 1.19261 1.80735 1.41779 1.61055 1.10562 1.05083 1.19674 1.46244 0.90954 0.86549 0.87772 1.25323 0.97004 0.97119 0.98308 1.69613 1.48965 1.15648 1.19328 0.85874 0.79171 0.79962 0.78948 1.20880 1.19809 1.19814 0.92085 0.91972 0.91714 0.90402 0.89045 0.90428 0.91655 0.76714 0.76699 0.75746 0.90027 0.89983 0.76993 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.12 37.16 0.34 -0.54 16 2 C -0.10 -0.64 2.30 -90.42 -0.21 -0.85 16 3 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 4 C -0.13 -0.54 5.32 -26.60 -0.14 -0.68 16 5 C 0.11 0.48 7.17 -4.48 -0.03 0.44 16 6 N -0.73 -6.05 5.45 -61.39 -0.33 -6.39 16 7 C 0.50 6.38 7.44 -11.87 -0.09 6.29 16 8 O -0.52 -9.66 16.58 4.65 0.08 -9.58 16 9 C 0.16 1.80 2.07 -69.30 -0.14 1.66 16 10 H 0.12 1.48 7.52 -51.93 -0.39 1.09 16 11 N -0.73 -9.41 4.70 -60.02 -0.28 -9.69 16 12 C 0.71 12.57 8.00 -86.91 -0.70 11.87 16 13 O -0.58 -12.41 15.58 4.38 0.07 -12.34 16 14 N -0.72 -13.06 5.53 -66.41 -0.37 -13.43 16 15 C 0.13 2.58 6.15 -5.19 -0.03 2.54 16 16 C 0.43 10.26 7.85 -10.98 -0.09 10.17 16 17 O -0.60 -15.70 15.24 5.55 0.08 -15.61 16 18 N -0.55 -14.08 5.29 -10.96 -0.06 -14.13 16 19 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.47 7.97 -51.93 -0.41 0.05 16 30 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.40 3.10 8.80 -40.82 -0.36 2.74 16 35 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 36 H 0.41 7.01 7.45 -40.82 -0.30 6.70 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.40 9.79 7.90 -40.82 -0.32 9.47 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -36.75 339.82 -6.77 -43.52 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -5.45 Total: 17.48 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: -1.33 Total: 22.87 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -0.32 Total: -67.36 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: 0.23 Total: -37.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.75 -6.77 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323308903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.797 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds