Wall clock time and date at job start Tue Mar 31 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.70210 * 2 1 4 4 C 1.53323 * 109.67553 * 120.50960 * 2 1 3 5 5 C 1.52927 * 108.68568 * 187.25068 * 4 2 1 6 6 N 1.45750 * 110.48316 * 309.24957 * 5 4 2 7 7 C 1.33353 * 124.10902 * 19.09910 * 6 5 4 8 8 O 1.21284 * 118.24449 * 177.74871 * 7 6 5 9 9 C 1.50174 * 123.50910 * 357.73253 * 7 6 5 10 10 H 1.09002 * 109.40185 * 257.55995 * 9 7 6 11 11 N 1.46499 * 109.40325 * 137.72937 * 9 7 6 12 12 C 1.34779 * 119.99707 * 84.99773 * 11 9 7 13 13 O 1.21591 * 120.00286 * 0.02562 * 12 11 9 14 14 N 1.34782 * 119.99814 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99625 * 179.97438 * 14 12 11 16 16 C 1.50708 * 109.46872 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47194 * 300.00675 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00238 * 23 21 19 27 27 H 1.09007 * 109.47262 * 180.51281 * 1 2 3 28 28 H 1.09000 * 109.47144 * 300.51074 * 1 2 3 29 29 H 1.09002 * 109.47553 * 60.51415 * 1 2 3 30 30 H 1.08997 * 109.59583 * 67.48938 * 4 2 1 31 31 H 1.09004 * 109.60191 * 307.00693 * 4 2 1 32 32 H 1.09002 * 109.29908 * 188.94236 * 5 4 2 33 33 H 1.08997 * 109.13294 * 69.45670 * 5 4 2 34 34 H 0.96999 * 117.94833 * 199.07427 * 6 5 4 35 35 H 0.96997 * 120.00426 * 265.00011 * 11 9 7 36 36 H 0.97000 * 119.99760 * 0.02562 * 14 12 11 37 37 H 1.09002 * 109.46941 * 60.00922 * 15 14 12 38 38 H 1.09000 * 109.47767 * 300.00372 * 15 14 12 39 39 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 40 40 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0462 -0.7329 1.2438 5 6 3.5643 -0.5640 1.3172 6 7 4.1793 -0.9203 0.0448 7 6 3.5209 -0.9793 -1.1134 8 8 4.1474 -1.2475 -2.1167 9 6 2.0453 -0.7319 -1.2418 10 1 1.5256 -1.6849 -1.3405 11 7 1.7906 0.0867 -2.4297 12 6 1.6674 -0.4985 -3.6376 13 8 1.7672 -1.7059 -3.7412 14 7 1.4326 0.2545 -4.7304 15 6 1.2992 -0.3816 -6.0434 16 6 1.0429 0.6732 -7.0889 17 8 0.9776 1.8412 -6.7686 18 7 0.8853 0.3184 -8.3795 19 6 0.6527 1.2781 -9.3306 20 1 0.5953 2.3181 -9.0456 21 6 0.4908 0.9124 -10.6613 22 7 0.5611 -0.3532 -11.0082 23 14 0.1731 2.2198 -11.9572 24 1 0.0385 1.5751 -13.2882 25 1 -1.0796 2.9471 -11.6299 26 1 1.3084 3.1766 -11.9837 27 1 -0.3634 -1.0277 0.0092 28 1 -0.3633 0.5217 0.8854 29 1 -0.3634 0.5058 -0.8945 30 1 1.7991 -1.7922 1.1728 31 1 1.5873 -0.3069 2.1361 32 1 3.9610 -1.2082 2.1020 33 1 3.7973 0.4746 1.5517 34 1 5.1270 -1.1271 0.0400 35 1 1.7106 1.0498 -2.3471 36 1 1.3526 1.2177 -4.6477 37 1 0.4661 -1.0841 -6.0238 38 1 2.2189 -0.9151 -6.2838 39 1 0.9372 -0.6157 -8.6356 40 1 0.4476 -0.6085 -11.9372 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323308903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:55 Heat of formation + Delta-G solvation = -138.534002 kcal Electronic energy + Delta-G solvation = -24039.106656 eV Core-core repulsion = 20273.209626 eV Total energy + Delta-G solvation = -3765.897030 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.93395 -40.75932 -39.86805 -37.94395 -36.32557 -36.03978 -35.26324 -33.72108 -33.35044 -30.30315 -29.29139 -28.06474 -26.31219 -24.33809 -22.78870 -21.83718 -21.38481 -20.62561 -20.11729 -19.38026 -18.39916 -17.70377 -17.51198 -17.38695 -16.65846 -16.55804 -16.24408 -15.77567 -15.52151 -15.44836 -15.25266 -15.13501 -14.74744 -14.15169 -13.95755 -13.79372 -13.56346 -13.53932 -13.21443 -12.89657 -12.65099 -12.47205 -12.30695 -12.13402 -11.84409 -11.72582 -11.56342 -11.42771 -11.24857 -10.56450 -10.34766 -10.10774 -10.02443 -9.86170 -8.50768 -6.01473 1.26145 1.38179 1.42652 1.54136 1.81506 1.89065 2.05039 2.28855 2.42769 3.02337 3.16106 3.29166 3.46918 3.61076 3.80336 3.94347 4.19295 4.27587 4.41485 4.44558 4.51198 4.54233 4.64712 4.87913 4.99071 5.02459 5.11008 5.25200 5.30974 5.37368 5.38503 5.45163 5.84837 5.88287 5.92399 6.31229 6.47543 6.98819 7.02653 7.22172 7.42077 7.53954 7.93370 8.66133 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.037065 B = 0.002632 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.250396 B =10636.258475 C =10905.305531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.126 4.126 5 C 0.101 3.899 6 N -0.711 5.711 7 C 0.492 3.508 8 O -0.592 6.592 9 C 0.160 3.840 10 H 0.101 0.899 11 N -0.716 5.716 12 C 0.709 3.291 13 O -0.622 6.622 14 N -0.723 5.723 15 C 0.142 3.858 16 C 0.435 3.565 17 O -0.622 6.622 18 N -0.559 5.559 19 C -0.338 4.338 20 H 0.088 0.912 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.999 3.001 24 H -0.271 1.271 25 H -0.268 1.268 26 H -0.270 1.270 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.401 0.599 35 H 0.413 0.587 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.398 0.602 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 0.515 28.825 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.118 0.882 4 C -0.164 4.164 5 C -0.021 4.021 6 N -0.363 5.363 7 C 0.277 3.723 8 O -0.472 6.472 9 C 0.051 3.949 10 H 0.119 0.881 11 N -0.372 5.372 12 C 0.409 3.591 13 O -0.502 6.502 14 N -0.381 5.381 15 C 0.014 3.986 16 C 0.222 3.778 17 O -0.510 6.510 18 N -0.194 5.194 19 C -0.467 4.467 20 H 0.106 0.894 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.822 3.178 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.195 1.195 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.250 0.750 36 H 0.248 0.752 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.562 0.000 28.222 28.265 hybrid contribution 0.423 0.487 -1.223 1.383 sum 1.985 0.487 26.998 27.076 Atomic orbital electron populations 1.21819 0.92818 1.02558 1.03022 1.21584 0.97715 1.00485 0.91232 0.88219 1.22019 0.94237 1.01839 0.98350 1.21784 0.93887 1.02745 0.83713 1.45615 1.13527 1.69190 1.07943 1.21148 0.91610 0.76340 0.83206 1.90804 1.69011 1.49643 1.37710 1.20840 0.90521 0.97561 0.86016 0.88146 1.44601 1.77305 1.10846 1.04486 1.15904 0.77260 0.84905 0.81048 1.90878 1.59394 1.14155 1.85776 1.44606 1.77171 1.11202 1.05078 1.20562 1.03205 0.93629 0.81237 1.20333 0.83683 0.89734 0.84020 1.90453 1.58727 1.20663 1.81199 1.41832 1.61690 1.10394 1.05529 1.19726 1.48447 0.90752 0.87821 0.89444 1.26178 0.96009 0.99325 0.99737 1.69687 1.48845 1.17086 1.20110 0.84898 0.79064 0.77361 0.76470 1.19603 1.19272 1.19517 0.92691 0.89454 0.93268 0.90864 0.85617 0.87707 0.89495 0.76387 0.75006 0.75240 0.88841 0.89927 0.76749 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.12 71.98 0.66 -0.74 16 2 C -0.09 -0.91 2.30 -10.66 -0.02 -0.94 16 3 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 4 C -0.13 -0.59 5.32 30.68 0.16 -0.42 16 5 C 0.10 0.50 7.17 86.50 0.62 1.12 16 6 N -0.71 -10.74 5.45 -467.31 -2.55 -13.29 16 7 C 0.49 12.59 7.44 87.71 0.65 13.25 16 8 O -0.59 -22.82 16.58 -2.18 -0.04 -22.85 16 9 C 0.16 3.45 2.07 44.11 0.09 3.54 16 10 H 0.10 2.58 7.52 -2.39 -0.02 2.56 16 11 N -0.72 -18.39 4.70 -462.07 -2.17 -20.56 16 12 C 0.71 25.57 8.00 179.05 1.43 27.00 16 13 O -0.62 -27.35 15.58 -3.14 -0.05 -27.40 16 14 N -0.72 -26.48 5.53 -482.27 -2.67 -29.15 16 15 C 0.14 5.77 6.15 85.64 0.53 6.29 16 16 C 0.44 21.14 7.85 87.66 0.69 21.83 16 17 O -0.62 -33.17 15.24 -3.05 -0.05 -33.22 16 18 N -0.56 -29.25 5.29 -306.98 -1.62 -30.87 16 19 C -0.34 -19.11 9.68 84.04 0.81 -18.30 16 20 H 0.09 5.15 7.16 -2.92 -0.02 5.13 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 23 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.64 7.97 -2.39 -0.02 0.62 16 30 H 0.07 0.46 8.12 -2.39 -0.02 0.44 16 31 H 0.13 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.40 5.79 8.80 -92.71 -0.82 4.97 16 35 H 0.41 8.09 8.60 -92.71 -0.80 7.29 16 36 H 0.41 14.27 7.45 -92.71 -0.69 13.58 16 37 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 38 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 40 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -82.45 339.82 -2.66 -85.11 By element: Atomic # 1 Polarization: 46.88 SS G_CDS: -1.92 Total: 44.96 kcal Atomic # 6 Polarization: 46.38 SS G_CDS: 6.09 Total: 52.47 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -8.73 Total: -143.65 kcal Atomic # 8 Polarization: -83.34 SS G_CDS: -0.13 Total: -83.47 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -82.45 -2.66 -85.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323308903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.419 kcal (2) G-P(sol) polarization free energy of solvation -82.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds