Wall clock time and date at job start Tue Mar 31 2020 03:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.66679 * 2 1
4 4 C 1.53344 * 109.70289 * 239.48675 * 2 1 3
5 5 C 1.52921 * 108.67275 * 172.71265 * 4 2 1
6 6 N 1.45754 * 110.48455 * 50.75745 * 5 4 2
7 7 C 1.33348 * 124.10978 * 340.91982 * 6 5 4
8 8 O 1.21274 * 118.24910 * 182.22601 * 7 6 5
9 9 C 1.50181 * 123.50571 * 2.22778 * 7 6 5
10 10 H 1.09003 * 109.32529 * 222.33334 * 9 7 6
11 11 N 1.46494 * 109.40429 * 102.54727 * 9 7 6
12 12 C 1.34778 * 120.00180 * 84.56882 * 11 9 7
13 13 O 1.21589 * 119.99662 * 359.97438 * 12 11 9
14 14 N 1.34772 * 119.99867 * 180.02562 * 12 11 9
15 15 C 1.46509 * 119.99923 * 179.97438 * 14 12 11
16 16 C 1.50698 * 109.47002 * 179.97438 * 15 14 12
17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14
18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14
19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15
20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16
21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16
22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47459 * 59.99812 * 23 21 19
25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19
26 26 H 1.48506 * 109.47211 * 300.00250 * 23 21 19
27 27 H 1.09006 * 109.46950 * 299.49825 * 1 2 3
28 28 H 1.08993 * 109.47453 * 59.49515 * 1 2 3
29 29 H 1.08999 * 109.47145 * 179.50342 * 1 2 3
30 30 H 1.08992 * 109.60307 * 292.47323 * 4 2 1
31 31 H 1.09005 * 109.60017 * 52.96198 * 4 2 1
32 32 H 1.09004 * 109.29572 * 171.06228 * 5 4 2
33 33 H 1.08998 * 109.30343 * 290.64860 * 5 4 2
34 34 H 0.97006 * 117.94156 * 160.92056 * 6 5 4
35 35 H 0.97003 * 119.99886 * 264.57610 * 11 9 7
36 36 H 0.97003 * 120.00202 * 359.97438 * 14 12 11
37 37 H 1.09003 * 109.46564 * 59.99951 * 15 14 12
38 38 H 1.08993 * 109.46901 * 300.00286 * 15 14 12
39 39 H 0.97001 * 120.00485 * 0.02562 * 18 16 15
40 40 H 0.96999 * 119.99863 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8969 1.0265 0.0000
4 6 2.0470 -0.7330 -1.2437
5 6 3.5649 -0.5627 -1.3167
6 7 4.1799 -0.9183 -0.0440
7 6 3.5213 -0.9781 1.1139
8 8 4.1475 -1.2460 2.1173
9 6 2.0454 -0.7316 1.2418
10 1 1.8568 -0.1219 2.1255
11 7 1.3478 -2.0127 1.3765
12 6 1.2338 -2.5940 2.5871
13 8 1.7104 -2.0553 3.5674
14 7 0.5925 -3.7729 2.7108
15 6 0.4691 -4.4051 4.0267
16 6 -0.2854 -5.7026 3.8918
17 8 -0.6807 -6.0640 2.8035
18 7 -0.5200 -6.4620 4.9803
19 6 -1.2113 -7.6397 4.8585
20 1 -1.5639 -7.9611 3.8896
21 6 -1.4582 -8.4197 5.9816
22 7 -1.0295 -8.0284 7.1605
23 14 -2.3994 -10.0247 5.8155
24 1 -1.6668 -10.9358 4.8999
25 1 -2.5293 -10.6628 7.1501
26 1 -3.7510 -9.7511 5.2644
27 1 -0.3633 0.5061 0.8945
28 1 -0.3634 0.5216 -0.8853
29 1 -0.3633 -1.0276 -0.0089
30 1 1.8008 -1.7924 -1.1726
31 1 1.5880 -0.3075 -2.1362
32 1 3.9623 -1.2068 -2.1013
33 1 3.8002 0.4758 -1.5495
34 1 5.1278 -1.1243 -0.0391
35 1 0.9680 -2.4427 0.5943
36 1 0.2126 -4.2028 1.9286
37 1 -0.0709 -3.7396 4.7002
38 1 1.4624 -4.6021 4.4296
39 1 -0.2035 -6.1732 5.8505
40 1 -1.2015 -8.5731 7.9445
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001323308907.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:39:58
Heat of formation + Delta-G solvation = -104.169412 kcal
Electronic energy + Delta-G solvation = -24190.741354 eV
Core-core repulsion = 20426.334484 eV
Total energy + Delta-G solvation = -3764.406870 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.147 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.05251 -39.35829 -38.11489 -37.18771 -35.14435 -34.34379 -33.59905 -32.68549
-31.34076 -29.58272 -28.21865 -26.88315 -24.47131 -23.86204 -21.76362 -21.11049
-19.60859 -19.20108 -18.59765 -17.96306 -17.34507 -16.73994 -16.26581 -15.69219
-15.44274 -15.20723 -14.80083 -14.70375 -14.43305 -14.08554 -13.90391 -13.68627
-13.61978 -13.35264 -13.01894 -12.77292 -12.24071 -12.13920 -11.90373 -11.65365
-11.60743 -11.31959 -11.08647 -11.05911 -10.48959 -10.29123 -10.27355 -9.95609
-9.59935 -9.29832 -9.06537 -8.59713 -8.59216 -8.07082 -6.48450 -3.90601
2.22961 2.97441 3.08154 3.15561 3.23128 3.27211 3.49312 3.78640
4.10769 4.13240 4.21658 4.23598 4.36810 4.47891 4.82540 4.93951
4.94470 5.02939 5.20216 5.23234 5.31319 5.32096 5.42062 5.57731
5.72627 5.90375 5.97423 6.06562 6.12186 6.35951 6.55802 6.79697
6.99711 7.12628 7.48304 7.95124 8.08967 8.23928 8.48364 8.84199
9.07256 9.42757 9.90688 10.68448
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.030901 B = 0.002771 C = 0.002697
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 905.888485 B =10103.546525 C =10377.538945
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.105 4.105
3 H 0.093 0.907
4 C -0.136 4.136
5 C 0.111 3.889
6 N -0.724 5.724
7 C 0.501 3.499
8 O -0.523 6.523
9 C 0.164 3.836
10 H 0.120 0.880
11 N -0.734 5.734
12 C 0.703 3.297
13 O -0.575 6.575
14 N -0.723 5.723
15 C 0.129 3.871
16 C 0.430 3.570
17 O -0.599 6.599
18 N -0.549 5.549
19 C -0.306 4.306
20 H 0.105 0.895
21 C 0.026 3.974
22 N -0.895 5.895
23 Si 0.934 3.066
24 H -0.273 1.273
25 H -0.283 1.283
26 H -0.273 1.273
27 H 0.062 0.938
28 H 0.061 0.939
29 H 0.061 0.939
30 H 0.074 0.926
31 H 0.090 0.910
32 H 0.077 0.923
33 H 0.066 0.934
34 H 0.397 0.603
35 H 0.398 0.602
36 H 0.405 0.595
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.396 0.604
40 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.486 16.944 -17.721 25.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.124 4.124
3 H 0.111 0.889
4 C -0.174 4.174
5 C -0.014 4.014
6 N -0.379 5.379
7 C 0.284 3.716
8 O -0.396 6.396
9 C 0.054 3.946
10 H 0.138 0.862
11 N -0.393 5.393
12 C 0.402 3.598
13 O -0.451 6.451
14 N -0.381 5.381
15 C 0.001 3.999
16 C 0.215 3.785
17 O -0.486 6.486
18 N -0.184 5.184
19 C -0.435 4.435
20 H 0.122 0.878
21 C -0.177 4.177
22 N -0.535 5.535
23 Si 0.760 3.240
24 H -0.198 1.198
25 H -0.209 1.209
26 H -0.198 1.198
27 H 0.081 0.919
28 H 0.080 0.920
29 H 0.080 0.920
30 H 0.092 0.908
31 H 0.108 0.892
32 H 0.095 0.905
33 H 0.084 0.916
34 H 0.233 0.767
35 H 0.233 0.767
36 H 0.242 0.758
37 H 0.100 0.900
38 H 0.100 0.900
39 H 0.230 0.770
40 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 5.713 16.977 -16.719 24.502
hybrid contribution -0.177 -1.161 -0.331 1.221
sum 5.536 15.815 -17.050 23.906
Atomic orbital electron populations
1.21778 0.93224 1.02793 1.02459 1.21639 0.97614 0.99986 0.93133
0.88864 1.22007 0.94532 1.01887 0.98948 1.21373 0.93774 1.00793
0.85450 1.45574 1.13367 1.71231 1.07684 1.20760 0.90903 0.77083
0.82839 1.90837 1.67694 1.45910 1.35126 1.20700 0.87056 0.86032
1.00782 0.86248 1.44869 1.61686 1.23666 1.09072 1.15853 0.79388
0.81112 0.83432 1.90971 1.52735 1.64778 1.36624 1.44719 1.60262
1.21476 1.11609 1.20789 1.01263 0.93709 0.84175 1.19762 0.86334
0.86704 0.85672 1.90480 1.57531 1.73912 1.26673 1.41783 1.48517
1.19587 1.08495 1.19676 1.31045 0.96681 0.96101 0.87761 1.25324
0.97806 0.99985 0.94603 1.69611 1.45597 1.39394 0.98874 0.85873
0.79809 0.80914 0.77354 1.19801 1.20861 1.19802 0.91853 0.91985
0.91981 0.90776 0.89175 0.90476 0.91555 0.76731 0.76672 0.75763
0.89951 0.89975 0.76980 0.91538
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.87 8.91 37.16 0.33 -0.54 16
2 C -0.10 -0.65 2.58 -90.41 -0.23 -0.89 16
3 H 0.09 0.48 8.13 -51.93 -0.42 0.06 16
4 C -0.14 -0.62 5.28 -26.59 -0.14 -0.76 16
5 C 0.11 0.51 7.17 -4.48 -0.03 0.48 16
6 N -0.72 -6.16 5.45 -61.39 -0.33 -6.49 16
7 C 0.50 6.43 7.24 -11.87 -0.09 6.35 16
8 O -0.52 -9.66 17.35 5.54 0.10 -9.56 16
9 C 0.16 1.80 2.27 -69.30 -0.16 1.64 16
10 H 0.12 1.55 7.58 -51.93 -0.39 1.16 16
11 N -0.73 -8.93 4.21 -60.03 -0.25 -9.19 16
12 C 0.70 12.01 8.51 -86.92 -0.74 11.27 16
13 O -0.57 -12.12 15.58 5.27 0.08 -12.04 16
14 N -0.72 -12.58 5.53 -66.41 -0.37 -12.95 16
15 C 0.13 2.51 6.15 -5.19 -0.03 2.47 16
16 C 0.43 10.06 7.85 -10.99 -0.09 9.97 16
17 O -0.60 -15.43 15.24 5.55 0.08 -15.34 16
18 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16
19 C -0.31 -8.40 9.68 -14.93 -0.14 -8.55 16
20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16
21 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16
22 N -0.89 -24.24 13.05 55.50 0.72 -23.51 16
23 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16
24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16
29 H 0.06 0.41 6.79 -51.93 -0.35 0.05 16
30 H 0.07 0.39 6.96 -51.93 -0.36 0.03 16
31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16
32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16
33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16
34 H 0.40 3.17 8.80 -40.82 -0.36 2.81 16
35 H 0.40 3.77 6.58 -40.82 -0.27 3.50 16
36 H 0.41 6.71 7.45 -40.82 -0.30 6.41 16
37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16
38 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16
39 H 0.40 9.69 7.90 -40.82 -0.32 9.37 16
40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
LS Contribution 336.36 15.07 5.07 5.07
Total: -1.00 -36.25 336.36 -6.65 -42.90
By element:
Atomic # 1 Polarization: 22.56 SS G_CDS: -5.25 Total: 17.31 kcal
Atomic # 6 Polarization: 23.46 SS G_CDS: -1.42 Total: 22.04 kcal
Atomic # 7 Polarization: -65.79 SS G_CDS: -0.29 Total: -66.08 kcal
Atomic # 8 Polarization: -37.21 SS G_CDS: 0.26 Total: -36.94 kcal
Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -36.25 -6.65 -42.90 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323308907.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.270 kcal
(2) G-P(sol) polarization free energy of solvation -36.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds